Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0053
         (605 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000519A9E Cluster: PREDICTED: similar to CG6860-PA,...    42   0.009
UniRef50_UPI00015B4597 Cluster: PREDICTED: similar to SD07737p; ...    42   0.011
UniRef50_UPI0000D56057 Cluster: PREDICTED: similar to CG6860-PA,...    40   0.046
UniRef50_Q16HJ7 Cluster: Putative uncharacterized protein; n=2; ...    40   0.046
UniRef50_A6UIV6 Cluster: Glycosyl transferase, WecB/TagA/CpsF fa...    36   0.74 
UniRef50_A5NQT8 Cluster: LigA; n=1; Methylobacterium sp. 4-46|Re...    36   0.98 
UniRef50_Q9VJE6 Cluster: CG6860-PB, isoform B; n=5; Coelomata|Re...    36   0.98 
UniRef50_Q8MXH2 Cluster: Nuclear hormone receptor family protein...    34   2.3  
UniRef50_A7P5Y6 Cluster: Chromosome chr4 scaffold_6, whole genom...    34   3.0  
UniRef50_Q89QT0 Cluster: Blr3044 protein; n=4; Bradyrhizobiaceae...    33   4.0  
UniRef50_A7HFG5 Cluster: Putative uncharacterized protein precur...    33   5.2  
UniRef50_Q47SB1 Cluster: Putative membrane protein precursor; n=...    33   6.9  
UniRef50_A3PWJ4 Cluster: Transcriptional regulator, SARP family;...    32   9.2  
UniRef50_Q9V9Y0 Cluster: CG1607-PA, isoform A; n=9; Bilateria|Re...    32   9.2  

>UniRef50_UPI0000519A9E Cluster: PREDICTED: similar to CG6860-PA,
           isoform A; n=1; Apis mellifera|Rep: PREDICTED: similar
           to CG6860-PA, isoform A - Apis mellifera
          Length = 758

 Score = 42.3 bits (95), Expect = 0.009
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +3

Query: 75  QTLSSETPLANPSPLLSGCRISPEGNISNCEDKSKIAHQQTYRQYKEALRQQRQQD---I 245
           QTL   T   +  PL +    S   ++ N ++K  + H QTYR+YKEALRQQR  +   +
Sbjct: 410 QTLPVSTNTQSVQPLQTST--SNATSLMNGDEKRPLNHIQTYREYKEALRQQRANEGPSV 467

Query: 246 YXPAQ 260
           Y P +
Sbjct: 468 YRPRE 472


>UniRef50_UPI00015B4597 Cluster: PREDICTED: similar to SD07737p;
           n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
           SD07737p - Nasonia vitripennis
          Length = 777

 Score = 41.9 bits (94), Expect = 0.011
 Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
 Frame = +3

Query: 159 NCEDKSKIAHQQTYRQYKEALRQQRQQD---IYXPAQ 260
           N E+K  ++H QTYR+YKEALRQQR  +   +Y P +
Sbjct: 421 NGEEKKSLSHIQTYREYKEALRQQRVNEGPSVYRPKE 457


>UniRef50_UPI0000D56057 Cluster: PREDICTED: similar to CG6860-PA,
           isoform A; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to CG6860-PA, isoform A - Tribolium castaneum
          Length = 715

 Score = 39.9 bits (89), Expect = 0.046
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
 Frame = +3

Query: 78  TLSSETPLANPSPLLSGCRISPEGNISNCE---DKSKIA---HQ-QTYRQYKEALRQQRQ 236
           T S+ +P  +    + G R+SP      C    ++ K+    HQ QTY++YK+AL+QQR 
Sbjct: 334 TPSTASPAPDNEEDVDGVRLSPSDGFGTCNGNNEEEKVVKPLHQIQTYKEYKDALKQQRA 393

Query: 237 QDI 245
            D+
Sbjct: 394 HDV 396


>UniRef50_Q16HJ7 Cluster: Putative uncharacterized protein; n=2;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 720

 Score = 39.9 bits (89), Expect = 0.046
 Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +3

Query: 165 EDKSKIAHQQTYRQYKEALRQQR-QQDIYXPAQ 260
           E    + + QTYR+YKEALRQQR Q DIY P +
Sbjct: 344 EKMRSLGNIQTYREYKEALRQQRSQNDIYRPKE 376


>UniRef50_A6UIV6 Cluster: Glycosyl transferase, WecB/TagA/CpsF
           family; n=1; Sinorhizobium medicae WSM419|Rep: Glycosyl
           transferase, WecB/TagA/CpsF family - Sinorhizobium
           medicae WSM419
          Length = 263

 Score = 35.9 bits (79), Expect = 0.74
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = -2

Query: 181 ILLLSSQLEMLPSGDMRHPESKGEGFAKGVSLERVCARERAAP 53
           I + S Q E +    M HPE +G GF  G SLE +   +R AP
Sbjct: 173 IAIGSPQSEKIAHAIMAHPEGRGVGFCVGASLEFLTGAKRRAP 215


>UniRef50_A5NQT8 Cluster: LigA; n=1; Methylobacterium sp. 4-46|Rep:
           LigA - Methylobacterium sp. 4-46
          Length = 761

 Score = 35.5 bits (78), Expect = 0.98
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +3

Query: 351 TPARTSTDRFLPIPVLPRTPHKXXTRPSCTRPRGGTKTEAPINRKRTKGQSRSGTLQER 527
           +PA T   R +P   L R P +  TRP+   P G +       R   +GQ R G LQ R
Sbjct: 132 SPASTVRRRLVPRSTLARAP-RPATRPAGGAPHGRSGRAPAAPRAARRGQPRDGVLQHR 189


>UniRef50_Q9VJE6 Cluster: CG6860-PB, isoform B; n=5; Coelomata|Rep:
           CG6860-PB, isoform B - Drosophila melanogaster (Fruit
           fly)
          Length = 1135

 Score = 35.5 bits (78), Expect = 0.98
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +3

Query: 192 QTYRQYKEALRQQRQQDIYXPAQNSP 269
           QTY++YKEAL+QQR Q+I    Q  P
Sbjct: 467 QTYKEYKEALKQQRNQEISVYKQKHP 492


>UniRef50_Q8MXH2 Cluster: Nuclear hormone receptor family protein
           66, isoform c; n=10; Caenorhabditis|Rep: Nuclear hormone
           receptor family protein 66, isoform c - Caenorhabditis
           elegans
          Length = 733

 Score = 34.3 bits (75), Expect = 2.3
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = +3

Query: 66  SRAQTLSSETPLANPSPLLS----GCRISPEGNISNCEDKSKIAHQQTYRQYKEALRQ 227
           S+A T+ S   L  PSPL S       + P G+++  + +++  HQQ  RQ ++A +Q
Sbjct: 127 SQASTVVSAPTLPPPSPLTSLPQKPAPLMPSGHVTTVDQQNRQQHQQQQRQQQQAQQQ 184


>UniRef50_A7P5Y6 Cluster: Chromosome chr4 scaffold_6, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr4 scaffold_6, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 250

 Score = 33.9 bits (74), Expect = 3.0
 Identities = 14/40 (35%), Positives = 28/40 (70%)
 Frame = -3

Query: 450 RGVECKRGEFXTCEAFGEALELEEIDR*RFGQVLPKPFIG 331
           +G +C   EF  C A+ ++LE++++   R G++LP+P++G
Sbjct: 156 KGEDCDMLEF-VCSAWPDSLEIQKVFIYRHGRLLPRPWLG 194


>UniRef50_Q89QT0 Cluster: Blr3044 protein; n=4;
           Bradyrhizobiaceae|Rep: Blr3044 protein - Bradyrhizobium
           japonicum
          Length = 561

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = +3

Query: 351 TPARTSTDRFLPIPVLPRTPHKXXTRPSCTRP 446
           T AR ST R  P PVLP   +     PSCT P
Sbjct: 72  TTARISTPRIGPAPVLPYARYSPNLYPSCTAP 103


>UniRef50_A7HFG5 Cluster: Putative uncharacterized protein
           precursor; n=1; Anaeromyxobacter sp. Fw109-5|Rep:
           Putative uncharacterized protein precursor -
           Anaeromyxobacter sp. Fw109-5
          Length = 148

 Score = 33.1 bits (72), Expect = 5.2
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 423 TRPSCTRPRGGTKTEAPINRKRTKGQSRSGTLQERCQSVRRQWQ 554
           +RP C   R   + EA +  KR  G  R+GT + +C S R ++Q
Sbjct: 18  SRPRCRAERCKVRGEARVRGKRWHGAPRNGTPRAKCGSPRPRFQ 61


>UniRef50_Q47SB1 Cluster: Putative membrane protein precursor; n=1;
           Thermobifida fusca YX|Rep: Putative membrane protein
           precursor - Thermobifida fusca (strain YX)
          Length = 257

 Score = 32.7 bits (71), Expect = 6.9
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -2

Query: 175 LLSSQLEMLPS--GDMRHPESKGEGFAKGVSLERVCARERAAPGDSVDGVLGVERPYPPP 2
           LL S +E +PS  G++R  E  GE   +G  L  +   E   PGD  D    VE     P
Sbjct: 77  LLRSVVEEVPSASGELRVVEGDGEVVGEGTLLRYLVEVEEGLPGDPADFAAAVEHVLSDP 136


>UniRef50_A3PWJ4 Cluster: Transcriptional regulator, SARP family;
           n=6; Mycobacterium|Rep: Transcriptional regulator, SARP
           family - Mycobacterium sp. (strain JLS)
          Length = 1141

 Score = 32.3 bits (70), Expect = 9.2
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = -2

Query: 472 GASVLVPPRGRVQEGRVXXL*GVRGSTGIGRNRSVEVRAGVAKAVYRGMGRXIVMEGDEV 293
           GA  +  P     E  V      RG+  IGR+R +   AGV   V  G  R +V+ G   
Sbjct: 259 GAGAVATPAAPTVEPSVVPAGPSRGAL-IGRSRELSTAAGVLSDVTAGAARWLVLSGPAG 317

Query: 292 VGXIR 278
           +G  R
Sbjct: 318 IGKTR 322


>UniRef50_Q9V9Y0 Cluster: CG1607-PA, isoform A; n=9; Bilateria|Rep:
           CG1607-PA, isoform A - Drosophila melanogaster (Fruit
           fly)
          Length = 505

 Score = 32.3 bits (70), Expect = 9.2
 Identities = 21/71 (29%), Positives = 34/71 (47%)
 Frame = -1

Query: 398 KHWNWKKSIGRGSGRCCQSRLSGDGEXNCDGGX*GGGXNPXRXRTVLCGXVYVLLALLS* 219
           K+ + K SI  G+G       +GDG+   DG   GG        ++L G   ++ +++  
Sbjct: 9   KNSSRKSSIVNGNGDASAKLTNGDGDGGGDG---GGEVTLKAKMSLLNGCTVIVGSIIGS 65

Query: 218 GFFVLSVGLLM 186
           G FV   G+LM
Sbjct: 66  GIFVSPTGVLM 76


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 603,946,359
Number of Sequences: 1657284
Number of extensions: 12174548
Number of successful extensions: 45472
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 43056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45422
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)