Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0028
         (703 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7SYB4 Cluster: Predicted protein; n=1; Nematostella ve...    33   5.1  
UniRef50_A6LND4 Cluster: Putative uncharacterized protein; n=1; ...    33   9.0  
UniRef50_Q8IDP9 Cluster: Putative uncharacterized protein PF13_0...    33   9.0  
UniRef50_Q4QQD9 Cluster: Reverse transcriptase; n=1; Schistosoma...    33   9.0  

>UniRef50_A7SYB4 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 756

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 260 IIIHTYLCNKIYKRSFCAPDNHIMGHQYTFNSDYVAILI 376
           +++H Y CN+ Y  S  AP   ++ HQY F S  V +L+
Sbjct: 293 VLLHQYYCNQYYCTSITAP---VLLHQYYFTSITVPVLL 328



 Score = 33.1 bits (72), Expect = 6.8
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 221 CLS*NDTASRIPQIIIHTYLCNKIYKRSFCAPDNHIMGHQYTFNSDY 361
           C S   T+  +P +++H Y CN+ Y  S  AP   ++ HQY  N  Y
Sbjct: 125 CTSITATSITVP-VLLHQYYCNQYYCTSITAP---VLLHQYYCNQYY 167


>UniRef50_A6LND4 Cluster: Putative uncharacterized protein; n=1;
           Thermosipho melanesiensis BI429|Rep: Putative
           uncharacterized protein - Thermosipho melanesiensis
           BI429
          Length = 141

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 27/104 (25%), Positives = 51/104 (49%)
 Frame = +3

Query: 135 SMGFTQFLHHVTRQTKKHINQIQIFLMIIVYHKMIQHLEYHKL*YIHICVIKYIKGLFVL 314
           S+ F   L+ +  + +K   +++I ++ I Y  +I  +      Y+   VI Y    F  
Sbjct: 34  SVSFLVLLYLIGNRLRK---KLKINILSIYYVALILTIFSFFPLYLTNSVITYFIAQFFA 90

Query: 315 PITILWVINIPLTVITLQF*LYKITNYSIGTFDIYAI*LKVRLI 446
            + IL+ + + L+V+     ++K+  +SI TF IY+     RLI
Sbjct: 91  FLFILFYLKVILSVLKSDLSVFKLLIFSILTFGIYSYFFFFRLI 134


>UniRef50_Q8IDP9 Cluster: Putative uncharacterized protein PF13_0239;
            n=3; Plasmodium|Rep: Putative uncharacterized protein
            PF13_0239 - Plasmodium falciparum (isolate 3D7)
          Length = 1244

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 25/76 (32%), Positives = 34/76 (44%)
 Frame = +2

Query: 212  NDNCLS*NDTASRIPQIIIHTYLCNKIYKRSFCAPDNHIMGHQYTFNSDYVAILII*NHK 391
            N+  L  ND  +    I I   L  KI KR +C  +NH    +Y  N     ++I+ +  
Sbjct: 908  NNIILDENDCINEYSDIFIQ--LLKKIKKRIWCFRNNHEFMEEYMNNVVKKLLIIVKDEF 965

Query: 392  LFHWYF*YICDLIKSS 439
             FHW    I DLI  S
Sbjct: 966  RFHWN--NISDLIGDS 979


>UniRef50_Q4QQD9 Cluster: Reverse transcriptase; n=1; Schistosoma
           mansoni|Rep: Reverse transcriptase - Schistosoma mansoni
           (Blood fluke)
          Length = 446

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +1

Query: 61  HGVRLEYSSCLVKLFSVRFGFNECAQWASHNSCIMSPDKLKNISTKFKY 207
           +G+ L  S C    FS+R G N  +   SHN+C +  D L N  +K KY
Sbjct: 226 NGLLLNPSKCQAVNFSLRHGQNLRSILGSHNACAIG-DSLINTVSKVKY 273


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 723,400,010
Number of Sequences: 1657284
Number of extensions: 15223199
Number of successful extensions: 29936
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29921
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)