Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10c01
(717 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI00015B40A4 Cluster: PREDICTED: similar to tRNA-dihyd... 254 2e-66
UniRef50_Q9VY45 Cluster: CG1434-PA; n=6; Endopterygota|Rep: CG14... 235 1e-60
UniRef50_Q9NX74 Cluster: tRNA-dihydrouridine synthase 2-like; n=... 217 2e-55
UniRef50_Q00RI1 Cluster: OSIGBa0125M19.5 protein; n=9; Magnoliop... 206 4e-52
UniRef50_UPI0000E472BC Cluster: PREDICTED: similar to tRNA-dihyd... 183 4e-45
UniRef50_Q54QJ2 Cluster: Putative uncharacterized protein; n=1; ... 180 4e-44
UniRef50_Q9XWJ9 Cluster: Putative uncharacterized protein; n=2; ... 173 3e-42
UniRef50_A4RU69 Cluster: Predicted protein; n=2; Ostreococcus|Re... 169 4e-41
UniRef50_O74731 Cluster: tRNA dihydrouridine synthase Dus2; n=1;... 156 4e-37
UniRef50_Q6C002 Cluster: Yarrowia lipolytica chromosome F of str... 155 1e-36
UniRef50_A7EHJ6 Cluster: Putative uncharacterized protein; n=2; ... 152 1e-35
UniRef50_Q5KGP0 Cluster: Putative uncharacterized protein; n=3; ... 151 1e-35
UniRef50_Q6BX60 Cluster: Debaryomyces hansenii chromosome B of s... 150 4e-35
UniRef50_Q59YG4 Cluster: Potential tRNA dihydrouridine synthase;... 150 4e-35
UniRef50_P53720 Cluster: tRNA-dihydrouridine synthase 2; n=7; Sa... 147 3e-34
UniRef50_A5DYF6 Cluster: Putative uncharacterized protein; n=1; ... 143 4e-33
UniRef50_A2QES0 Cluster: Contig An02c0390, complete genome; n=12... 140 4e-32
UniRef50_Q4PAE4 Cluster: Putative uncharacterized protein; n=1; ... 133 5e-30
UniRef50_Q1DPY5 Cluster: Putative uncharacterized protein; n=1; ... 132 8e-30
UniRef50_A6R3V4 Cluster: Putative uncharacterized protein; n=1; ... 126 4e-28
UniRef50_A2DYY3 Cluster: Putative uncharacterized protein; n=1; ... 105 1e-21
UniRef50_Q38BB4 Cluster: TRNA-dihydrouridine synthase 2, putativ... 99 5e-20
UniRef50_Q24833 Cluster: Putative nitrogen fixation regulatory p... 97 5e-19
UniRef50_A2F0D1 Cluster: Putative uncharacterized protein; n=1; ... 91 3e-17
UniRef50_A0EG06 Cluster: Chromosome undetermined scaffold_94, wh... 86 7e-16
UniRef50_UPI0000499E32 Cluster: conserved hypothetical protein; ... 83 9e-15
UniRef50_Q5CSA9 Cluster: Dus1p, tRNA dihydrouridine synthase; n=... 83 9e-15
UniRef50_Q9FH91 Cluster: Gb|AAF51525.1; n=6; Magnoliophyta|Rep: ... 82 2e-14
UniRef50_Q54CU9 Cluster: Putative uncharacterized protein; n=1; ... 81 4e-14
UniRef50_Q54ES7 Cluster: Putative uncharacterized protein; n=1; ... 80 5e-14
UniRef50_Q8PX79 Cluster: NifR3-like protein; n=5; Archaea|Rep: N... 80 5e-14
UniRef50_Q5A4Y0 Cluster: Potential tRNA dihydrouridine synthase;... 80 6e-14
UniRef50_Q54XQ6 Cluster: Putative uncharacterized protein; n=1; ... 79 8e-14
UniRef50_P53759 Cluster: tRNA-dihydrouridine synthase 1; n=11; S... 79 8e-14
UniRef50_O74553 Cluster: tRNA dihydrouridine synthase Dus4; n=1;... 77 3e-13
UniRef50_Q9HGN6 Cluster: tRNA dihydrouridine synthase Dus1; n=1;... 76 8e-13
UniRef50_Q0YFW9 Cluster: Dihydrouridine synthase TIM-barrel prot... 73 7e-12
UniRef50_A3AVU4 Cluster: Putative uncharacterized protein; n=1; ... 73 7e-12
UniRef50_A5K1E0 Cluster: tRNA-dihydrouridine synthase, putative;... 73 7e-12
UniRef50_Q4Q231 Cluster: Dihydrouridine synthase domain protein-... 72 2e-11
UniRef50_Q8SUV4 Cluster: Putative uncharacterized protein ECU07_... 71 3e-11
UniRef50_Q4PG83 Cluster: Putative uncharacterized protein; n=1; ... 70 5e-11
UniRef50_Q090Q9 Cluster: TRNA-dihydrouridine synthase B; n=2; Cy... 70 7e-11
UniRef50_Q9VPM1 Cluster: CG3645-PA, isoform A; n=2; Diptera|Rep:... 69 2e-10
UniRef50_Q2H6D9 Cluster: Putative uncharacterized protein; n=1; ... 68 2e-10
UniRef50_Q9CLW3 Cluster: tRNA-dihydrouridine synthase B; n=17; P... 68 3e-10
UniRef50_Q8YAB9 Cluster: Lmo0227 protein; n=55; Bacteria|Rep: Lm... 67 4e-10
UniRef50_Q4D174 Cluster: Dihydrouridine synthase (Dus), putative... 67 5e-10
UniRef50_A7AQM0 Cluster: Dihydrouridine synthase, putative; n=1;... 67 5e-10
UniRef50_Q7RX85 Cluster: Putative uncharacterized protein NCU000... 67 5e-10
UniRef50_P37567 Cluster: Probable tRNA-dihydrouridine synthase 1... 66 8e-10
UniRef50_A5D5Q0 Cluster: TRNA-dihydrouridine synthase; n=5; Firm... 66 1e-09
UniRef50_Q6AJZ5 Cluster: TRNA-dihydrouridine synthase; n=1; Desu... 65 1e-09
UniRef50_UPI00015B403F Cluster: PREDICTED: similar to MGC79829 p... 64 4e-09
UniRef50_Q64MI4 Cluster: Putative TIM-barrel enzyme; n=3; Bacter... 63 6e-09
UniRef50_A4TZK1 Cluster: Dihydrouridine synthase, DuS; n=4; Prot... 63 6e-09
UniRef50_A7S213 Cluster: Predicted protein; n=1; Nematostella ve... 63 8e-09
UniRef50_Q6MNE9 Cluster: Nitrogen regulation protein nifR3; n=1;... 62 1e-08
UniRef50_Q6P1R4 Cluster: tRNA-dihydrouridine synthase 1-like; n=... 62 1e-08
UniRef50_Q8KB61 Cluster: TIM-barrel protein, nifR3 family; n=10;... 61 2e-08
UniRef50_Q1Q3Q8 Cluster: Strongly similar to tRNA-dihydrouridine... 61 2e-08
UniRef50_A6CBK4 Cluster: Predicted TIM-barrel enzyme, possibly d... 61 2e-08
UniRef50_A2FJB5 Cluster: TIM-barrel protein, nifR3 family protei... 61 2e-08
UniRef50_A3LUK5 Cluster: Dihydrouridine synthase of tRNA; n=6; S... 61 2e-08
UniRef50_Q08111 Cluster: Probable tRNA-dihydrouridine synthase; ... 61 2e-08
UniRef50_Q74EF7 Cluster: Dihydrouridine synthase family protein;... 61 3e-08
UniRef50_Q0FAI7 Cluster: tRNA-dihydrouridine synthase, putative;... 61 3e-08
UniRef50_Q5KP54 Cluster: TRNA dihydrouridine synthase, putative;... 61 3e-08
UniRef50_Q06063 Cluster: tRNA-dihydrouridine synthase 4; n=10; S... 61 3e-08
UniRef50_Q0IFC6 Cluster: tRNA-dihydrouridine synthase; n=2; Culi... 60 4e-08
UniRef50_A7DPL5 Cluster: Putative TIM-barrel protein, nifR3 fami... 60 4e-08
UniRef50_O95620 Cluster: tRNA-dihydrouridine synthase 4-like; n=... 60 4e-08
UniRef50_Q6F288 Cluster: TRNA dihydrouridine synthetase; n=3; Mo... 60 5e-08
UniRef50_Q1VN28 Cluster: Dihydrouridine synthase TIM-barrel prot... 60 7e-08
UniRef50_Q57V78 Cluster: TRNA-dihydrouridine synthase 1, putativ... 60 7e-08
UniRef50_Q2UL89 Cluster: Uncharacterized conserved protein; n=15... 59 9e-08
UniRef50_Q9XVN8 Cluster: Putative uncharacterized protein; n=2; ... 59 1e-07
UniRef50_A6LGT0 Cluster: Putative TIM-barrel enzyme; n=1; Paraba... 58 2e-07
UniRef50_Q251N6 Cluster: Putative uncharacterized protein; n=2; ... 58 2e-07
UniRef50_Q9TYN2 Cluster: Putative uncharacterized protein Y37E11... 58 2e-07
UniRef50_Q4UGK9 Cluster: Putative uncharacterized protein; n=2; ... 58 2e-07
UniRef50_UPI000023EA9A Cluster: hypothetical protein FG07217.1; ... 58 3e-07
UniRef50_Q6PEH0 Cluster: Zgc:63779; n=8; Chordata|Rep: Zgc:63779... 57 4e-07
UniRef50_Q5LRN6 Cluster: TRNA-dihydrouridine synthase, putative;... 57 4e-07
UniRef50_Q4WRF0 Cluster: Dihydrouridine synthase family protein,... 57 4e-07
UniRef50_A0LJ96 Cluster: Putative TIM-barrel protein, nifR3 fami... 56 7e-07
UniRef50_A4S3Q5 Cluster: Predicted protein; n=2; Eukaryota|Rep: ... 56 7e-07
UniRef50_Q4PIC3 Cluster: Putative uncharacterized protein; n=1; ... 56 7e-07
UniRef50_Q5FTP7 Cluster: Nitrogen assimilation regulatory protei... 56 9e-07
UniRef50_A6VYA3 Cluster: TIM-barrel protein, yjbN family; n=8; P... 56 9e-07
UniRef50_Q9ZED2 Cluster: Probable tRNA-dihydrouridine synthase; ... 56 9e-07
UniRef50_Q0B0N8 Cluster: Putative TIM-barrel protein, NifR3 fami... 56 1e-06
UniRef50_A4M5I1 Cluster: Dihydrouridine synthase, DuS; n=1; Petr... 56 1e-06
UniRef50_Q7UBC5 Cluster: tRNA-dihydrouridine synthase A; n=231; ... 56 1e-06
UniRef50_A2ACC0 Cluster: Novel protein; n=17; Eumetazoa|Rep: Nov... 55 2e-06
UniRef50_A6DPY9 Cluster: Putative uncharacterized protein; n=1; ... 55 2e-06
UniRef50_UPI0000DAE45A Cluster: hypothetical protein Rgryl_01000... 55 2e-06
UniRef50_Q5M689 Cluster: Possible transcriptional regulator; n=2... 55 2e-06
UniRef50_Q8GQD1 Cluster: NifR; n=5; Leptospira|Rep: NifR - Lepto... 55 2e-06
UniRef50_A6BZR9 Cluster: Predicted TIM-barrel enzyme, possibly d... 55 2e-06
UniRef50_A4S141 Cluster: Predicted protein; n=1; Ostreococcus lu... 55 2e-06
UniRef50_Q6SFW7 Cluster: NifR3/Smm1 family protein; n=1; uncultu... 54 3e-06
UniRef50_Q2RZL4 Cluster: NifR3 family enzyme; n=1; Salinibacter ... 54 4e-06
UniRef50_Q010A0 Cluster: tRNA-dihydrouridine synthase; n=1; Ostr... 54 4e-06
UniRef50_O52532 Cluster: tRNA-dihydrouridine synthase B; n=6; Ga... 54 4e-06
UniRef50_Q2RTR9 Cluster: Dihydrouridine synthase TIM-barrel prot... 54 5e-06
UniRef50_Q582L4 Cluster: TRNA-dihydrouridine synthase 3, putativ... 54 5e-06
UniRef50_Q1NXZ7 Cluster: Dihydrouridine synthase TIM-barrel prot... 53 6e-06
UniRef50_A4XH30 Cluster: Putative TIM-barrel protein, nifR3 fami... 53 6e-06
UniRef50_Q96G46 Cluster: tRNA-dihydrouridine synthase 3-like; n=... 53 6e-06
UniRef50_UPI00015B6197 Cluster: PREDICTED: similar to CG10463-PA... 53 8e-06
UniRef50_Q899H0 Cluster: Nitrogen regulation protein nifR3; n=24... 53 8e-06
UniRef50_Q6MAU6 Cluster: Putative uncharacterized protein yohI; ... 53 8e-06
UniRef50_A2FU21 Cluster: Putative uncharacterized protein; n=1; ... 53 8e-06
UniRef50_Q04VP3 Cluster: TRNA-dihydrouridine synthase; n=4; Lept... 52 1e-05
UniRef50_A2DHB4 Cluster: Putative uncharacterized protein; n=1; ... 52 1e-05
UniRef50_Q91XI1 Cluster: tRNA-dihydrouridine synthase 3-like; n=... 52 1e-05
UniRef50_UPI000058804E Cluster: PREDICTED: similar to MGC53781 p... 52 1e-05
UniRef50_Q7MXX6 Cluster: TIM-barrel protein, putative, NifR3 fam... 52 1e-05
UniRef50_Q3AZ67 Cluster: Dihydrouridine synthase TIM-barrel prot... 52 1e-05
UniRef50_A6EDJ3 Cluster: Probable TIM-barrel protein, NifR3 fami... 52 1e-05
UniRef50_Q7R3H4 Cluster: GLP_158_49916_51304; n=1; Giardia lambl... 52 1e-05
UniRef50_Q6MRF1 Cluster: Transcription regulator homolog yacF; n... 52 2e-05
UniRef50_Q4QEF9 Cluster: Putative uncharacterized protein; n=3; ... 52 2e-05
UniRef50_Q22A31 Cluster: TIM-barrel protein, yjbN family; n=1; T... 52 2e-05
UniRef50_A2EN54 Cluster: Putative uncharacterized protein; n=1; ... 52 2e-05
UniRef50_Q01ML2 Cluster: H0613H07.1 protein; n=10; Eukaryota|Rep... 51 2e-05
UniRef50_Q06053 Cluster: tRNA-dihydrouridine synthase 3; n=6; Sa... 51 2e-05
UniRef50_Q55724 Cluster: Probable tRNA-dihydrouridine synthase 1... 51 2e-05
UniRef50_Q9Z7D8 Cluster: Predicted oxidoreductase; n=7; Chlamydi... 50 4e-05
UniRef50_Q5KPM6 Cluster: Putative uncharacterized protein; n=2; ... 50 4e-05
UniRef50_Q5ZRM0 Cluster: Nitrogen regulation protein; n=4; Legio... 50 6e-05
UniRef50_Q489F6 Cluster: NifR3/Smm1 family protein; n=2; Proteob... 50 6e-05
UniRef50_Q0G7A4 Cluster: Nitrogen regulation protein nifr3; n=2;... 50 6e-05
UniRef50_A1IF01 Cluster: Dihydrouridine synthase family protein;... 50 6e-05
UniRef50_O83945 Cluster: Probable tRNA-dihydrouridine synthase; ... 50 6e-05
UniRef50_UPI0000D5693C Cluster: PREDICTED: similar to dihydrouri... 50 8e-05
UniRef50_Q31II6 Cluster: Dihydrouridine synthase; n=1; Thiomicro... 50 8e-05
UniRef50_Q0F181 Cluster: Dihydrouridine synthase TIM-barrel prot... 50 8e-05
UniRef50_A4EC62 Cluster: Putative uncharacterized protein; n=1; ... 50 8e-05
UniRef50_Q8ZAX7 Cluster: tRNA-dihydrouridine synthase B; n=214; ... 50 8e-05
UniRef50_Q5SMC7 Cluster: TRNA-dihydrouridine synthase; n=2; Ther... 49 1e-04
UniRef50_Q9VJ06 Cluster: CG10495-PA; n=2; Sophophora|Rep: CG1049... 49 1e-04
UniRef50_Q5CRK5 Cluster: Ylr401cp-like protein with 2 CCCH domai... 49 1e-04
UniRef50_Q9UTH9 Cluster: tRNA dihydrouridine synthase Dus3; n=1;... 49 1e-04
UniRef50_A0EAZ6 Cluster: Chromosome undetermined scaffold_87, wh... 49 1e-04
UniRef50_Q0VPD7 Cluster: TIM-barrel protein, yjbN family; n=4; B... 48 2e-04
UniRef50_A4S604 Cluster: Predicted protein; n=1; Ostreococcus lu... 48 2e-04
UniRef50_Q09504 Cluster: Uncharacterized tRNA-dihydrouridine syn... 48 2e-04
UniRef50_UPI0000499494 Cluster: conserved hypothetical protein; ... 48 2e-04
UniRef50_A7HK00 Cluster: Dihydrouridine synthase DuS; n=4; Therm... 48 2e-04
UniRef50_A6PPM6 Cluster: Dihydrouridine synthase, DuS; n=1; Vict... 48 3e-04
UniRef50_A4YUQ6 Cluster: Putative tRNA-dihydrouridine synthase; ... 48 3e-04
UniRef50_Q5ZVH8 Cluster: Zinc binding TIM barrel protein, YjbN f... 47 4e-04
UniRef50_Q30WR3 Cluster: Dihydrouridine synthase family protein;... 47 4e-04
UniRef50_Q5KC68 Cluster: TRNA dihydrouridine synthase, putative;... 47 4e-04
UniRef50_Q89LQ7 Cluster: Nitrogen regulation protein; n=22; Alph... 47 5e-04
UniRef50_A4SY29 Cluster: Dihydrouridine synthase, DuS; n=1; Poly... 47 5e-04
UniRef50_A3VNG3 Cluster: Dihydrouridine synthase TIM-barrel prot... 47 5e-04
UniRef50_Q4Q391 Cluster: Putative uncharacterized protein; n=3; ... 47 5e-04
UniRef50_Q2IG49 Cluster: Dihydrouridine synthase TIM-barrel prot... 46 7e-04
UniRef50_Q21L63 Cluster: Dihydrouridine synthase, DuS; n=1; Sacc... 46 7e-04
UniRef50_Q14SX5 Cluster: Putative dihydrouridine synthase; n=1; ... 46 7e-04
UniRef50_A5GPV9 Cluster: TRNA-dihydrouridine synthase A; n=21; C... 46 7e-04
UniRef50_A5EVV4 Cluster: Dihydrouridine synthase; n=1; Dicheloba... 46 7e-04
UniRef50_A1AW94 Cluster: TIM-barrel protein, yjbN family; n=1; C... 46 7e-04
UniRef50_Q2RM54 Cluster: Dihydrouridine synthase TIM-barrel prot... 46 0.001
UniRef50_Q3E0H8 Cluster: Dihydrouridine synthase TIM-barrel prot... 46 0.001
UniRef50_A1RNI1 Cluster: TIM-barrel protein, yjbN family; n=30; ... 46 0.001
UniRef50_Q9RRP8 Cluster: NifR3 protein; n=2; Deinococcus|Rep: Ni... 46 0.001
UniRef50_Q607L4 Cluster: TIM-barrel protein, yjbN family; n=10; ... 46 0.001
UniRef50_Q7R9R0 Cluster: Uncharacterized protein family UPF0034,... 45 0.002
UniRef50_Q7R1J1 Cluster: GLP_38_15456_16676; n=1; Giardia lambli... 45 0.002
UniRef50_UPI000023CFE7 Cluster: hypothetical protein FG01258.1; ... 45 0.002
UniRef50_Q7UKE8 Cluster: Putative uncharacterized protein; n=2; ... 45 0.002
UniRef50_Q6M9N8 Cluster: Putative uncharacterized protein; n=1; ... 45 0.002
UniRef50_A6W1E8 Cluster: Dihydrouridine synthase DuS; n=1; Marin... 45 0.002
UniRef50_Q4Q669 Cluster: Dihydrouridine synthase (Dus), putative... 45 0.002
UniRef50_Q9PGB5 Cluster: tRNA-dihydrouridine synthase A; n=8; Pr... 45 0.002
UniRef50_A5WG83 Cluster: TIM-barrel protein, yjbN family; n=4; M... 44 0.003
UniRef50_A7EMF2 Cluster: Putative uncharacterized protein; n=1; ... 44 0.003
UniRef50_Q8G7W8 Cluster: Possible NifR3-like protein; n=4; Bifid... 44 0.004
UniRef50_O25427 Cluster: Probable tRNA-dihydrouridine synthase; ... 44 0.004
UniRef50_Q9A7I4 Cluster: Nitrogen regulation protein Nifr3; n=2;... 44 0.005
UniRef50_Q7UXK8 Cluster: Putative uncharacterized protein; n=3; ... 44 0.005
UniRef50_Q7X346 Cluster: Putative uncharacterized protein; n=1; ... 44 0.005
UniRef50_A7CWF1 Cluster: Putative TIM-barrel protein, nifR3 fami... 43 0.007
UniRef50_A4RQU5 Cluster: Predicted protein; n=2; Ostreococcus|Re... 43 0.007
UniRef50_Q7R684 Cluster: GLP_574_116690_118078; n=1; Giardia lam... 43 0.007
UniRef50_A6U9Y2 Cluster: Dihydrouridine synthase DuS; n=2; Sinor... 43 0.009
UniRef50_Q9JUP6 Cluster: tRNA-dihydrouridine synthase C; n=4; Ne... 43 0.009
UniRef50_A4BWB1 Cluster: Putative uncharacterized protein; n=5; ... 42 0.011
UniRef50_Q583Y8 Cluster: TRNA-dihydrouridine synthase 4, putativ... 42 0.011
UniRef50_A6DU09 Cluster: Dihydrouridine synthase family protein;... 42 0.015
UniRef50_Q6MNE4 Cluster: Dihydrouridine synthase family protein;... 42 0.020
UniRef50_Q0C0N1 Cluster: Putative tRNA-dihydrouridine synthase; ... 42 0.020
UniRef50_Q8YMN5 Cluster: Transcriptional regulator; n=5; Bacteri... 41 0.027
UniRef50_A6GGZ7 Cluster: Putative uncharacterized protein; n=2; ... 41 0.027
UniRef50_A2EF32 Cluster: Dihydrouridine synthase, putative; n=1;... 41 0.027
UniRef50_Q6A959 Cluster: TIM-barrel enzyme, NifR3 family; n=1; P... 41 0.035
UniRef50_Q1QZQ6 Cluster: Dihydrouridine synthase, DuS; n=1; Chro... 41 0.035
UniRef50_A5KKR3 Cluster: Putative uncharacterized protein; n=1; ... 40 0.046
UniRef50_Q550J6 Cluster: Putative uncharacterized protein; n=2; ... 40 0.046
UniRef50_Q4FQ57 Cluster: Possible tRNA-dihydrouridine synthase; ... 40 0.061
UniRef50_Q056Y8 Cluster: TRNA-dihydrouridine synthase A; n=1; Bu... 40 0.061
UniRef50_Q17M24 Cluster: tRNA-dihydrouridine synthase; n=1; Aede... 40 0.061
UniRef50_Q4FLD8 Cluster: Putative uncharacterized protein; n=2; ... 40 0.081
UniRef50_O51243 Cluster: Putative uncharacterized protein BB0225... 40 0.081
UniRef50_Q1N033 Cluster: Putative uncharacterized protein; n=1; ... 40 0.081
UniRef50_Q3IKP0 Cluster: TRNA-dihydrouridine synthase C; n=5; Al... 39 0.11
UniRef50_Q8RFK3 Cluster: Nitrogen regulation protein NIFR3; n=3;... 39 0.14
UniRef50_Q83D40 Cluster: TIM-barrel protein, yjbN family; n=7; B... 39 0.14
UniRef50_Q5HJT5 Cluster: Probable tRNA-dihydrouridine synthase; ... 39 0.14
UniRef50_Q7R3K2 Cluster: GLP_158_4738_3071; n=1; Giardia lamblia... 38 0.19
UniRef50_Q2HDP2 Cluster: Putative uncharacterized protein; n=1; ... 38 0.19
UniRef50_Q8XYX1 Cluster: tRNA-dihydrouridine synthase C; n=26; P... 38 0.33
UniRef50_Q127F8 Cluster: Dihydrouridine synthase, DuS; n=3; Prot... 37 0.43
UniRef50_Q47741 Cluster: Dihydroorotate dehydrogenase B, catalyt... 37 0.43
UniRef50_O53835 Cluster: Probable tRNA-dihydrouridine synthase; ... 37 0.43
UniRef50_Q6AKJ6 Cluster: Putative uncharacterized protein; n=1; ... 37 0.57
UniRef50_Q1F0W8 Cluster: Dihydroorotate dehydrogenase 1; n=1; Cl... 37 0.57
UniRef50_A6NW05 Cluster: Putative uncharacterized protein; n=1; ... 37 0.57
UniRef50_A4BCJ5 Cluster: NifR3/Smm1 family protein; n=2; Gammapr... 37 0.57
UniRef50_A4AAB0 Cluster: TRNA-dihydrouridine synthase C; n=2; un... 37 0.57
UniRef50_A6RW05 Cluster: Putative uncharacterized protein; n=1; ... 37 0.57
UniRef50_Q4S086 Cluster: Chromosome undetermined SCAF14784, whol... 36 0.76
UniRef50_Q47C15 Cluster: Dihydrouridine synthase, DuS; n=2; Beta... 36 0.76
UniRef50_O67533 Cluster: Probable tRNA-dihydrouridine synthase; ... 36 0.76
UniRef50_O51679 Cluster: Histidine phosphokinase/phophatase, put... 36 1.00
UniRef50_A5EXU5 Cluster: TRNA-dihydrouridine synthase A; n=1; Di... 36 1.00
UniRef50_Q9RDC6 Cluster: Putative uncharacterized protein SCO249... 36 1.3
UniRef50_Q97DM0 Cluster: Predicted TIM-barrel enzyme, nifR3 fami... 36 1.3
UniRef50_A7DKP5 Cluster: Dihydrouridine synthase, DuS; n=2; Meth... 36 1.3
UniRef50_A1VHK2 Cluster: Dihydrouridine synthase, DuS; n=4; Desu... 36 1.3
UniRef50_Q8G660 Cluster: Dihydroorotate dehydrogenase; n=4; Bifi... 35 1.7
UniRef50_A6DCX2 Cluster: tRNA-dihydrouridine synthase B; n=1; Ca... 35 1.7
UniRef50_Q7SGX4 Cluster: Putative uncharacterized protein NCU031... 35 1.7
UniRef50_A6RVN2 Cluster: Putative uncharacterized protein; n=2; ... 35 1.7
UniRef50_A4RL93 Cluster: Putative uncharacterized protein; n=1; ... 35 1.7
UniRef50_Q1JWD3 Cluster: Dihydrouridine synthase, DuS; n=1; Desu... 35 2.3
UniRef50_A7AAN4 Cluster: Putative uncharacterized protein; n=2; ... 35 2.3
UniRef50_A1RZC9 Cluster: Dihydroorotate dehydrogenase family pro... 35 2.3
UniRef50_Q979G6 Cluster: Dihydroorotate dehydrogenase; n=4; Ther... 35 2.3
UniRef50_UPI0000F1F64B Cluster: PREDICTED: hypothetical protein;... 34 3.0
UniRef50_A3RPJ2 Cluster: TRNA-dihydrouridine synthase; n=2; Prot... 34 3.0
UniRef50_Q9VIS4 Cluster: CG10463-PA; n=3; Sophophora|Rep: CG1046... 34 3.0
UniRef50_Q7PVV7 Cluster: ENSANGP00000016833; n=2; Endopterygota|... 34 3.0
UniRef50_Q23WS6 Cluster: Putative uncharacterized protein; n=1; ... 34 3.0
UniRef50_O75864 Cluster: R32611_1; n=20; Euteleostomi|Rep: R3261... 34 3.0
UniRef50_Q6D9Y3 Cluster: Enterobactin synthetase component F; n=... 34 4.0
UniRef50_Q6AJ40 Cluster: Putative uncharacterized protein; n=1; ... 34 4.0
UniRef50_A1SX05 Cluster: Dihydrouridine synthase, DuS; n=3; Alte... 34 4.0
UniRef50_A4RVX6 Cluster: Predicted protein; n=2; Ostreococcus|Re... 34 4.0
UniRef50_A3JG66 Cluster: Putative uncharacterized protein; n=3; ... 33 5.3
UniRef50_O31546 Cluster: Probable tRNA-dihydrouridine synthase 2... 33 5.3
UniRef50_Q39PB0 Cluster: Dihydroorotate dehydrogenase 1; n=81; B... 33 7.0
UniRef50_Q1IVR5 Cluster: Dihydrouridine synthase TIM-barrel prot... 33 7.0
UniRef50_A7BE39 Cluster: Putative uncharacterized protein; n=1; ... 33 7.0
UniRef50_A0LD69 Cluster: Dihydroorotate dehydrogenase family pro... 33 7.0
UniRef50_Q73RG6 Cluster: Dihydrouridine synthase, putative; n=1;... 33 9.3
UniRef50_A3J321 Cluster: Putative uncharacterized protein; n=1; ... 33 9.3
UniRef50_Q8IJJ6 Cluster: Putative uncharacterized protein; n=1; ... 33 9.3
UniRef50_Q2NEH7 Cluster: Putative uncharacterized protein; n=1; ... 33 9.3
UniRef50_Q884C6 Cluster: tRNA-dihydrouridine synthase C; n=8; Pr... 33 9.3
>UniRef50_UPI00015B40A4 Cluster: PREDICTED: similar to
tRNA-dihydrouridine synthase; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to
tRNA-dihydrouridine synthase - Nasonia vitripennis
Length = 505
Score = 254 bits (622), Expect = 2e-66
Identities = 121/167 (72%), Positives = 141/167 (84%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
+ Y +K+I+APMVRIGTLPMRLLAL+YGADIVYTEELIDWK LRS RR N++L TVDY+D
Sbjct: 53 LTYADKLIMAPMVRIGTLPMRLLALEYGADIVYTEELIDWKLLRSVRRVNEVLGTVDYID 112
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGM 441
+TDGTIVFRT E+ +VVLQLGTCD RALKVAKLVE DVA ID+NMGCPK FSI GGM
Sbjct: 113 RTDGTIVFRTSPIERDRVVLQLGTCDANRALKVAKLVEQDVAGIDVNMGCPKRFSILGGM 172
Query: 442 GVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLI 582
G ALL +P+KA +IL+TLV LSIPVTCKIR+L E TL+LV+ L+
Sbjct: 173 GAALLKQPEKASEILRTLVGGLSIPVTCKIRVLGNVEDTLKLVDTLV 219
>UniRef50_Q9VY45 Cluster: CG1434-PA; n=6; Endopterygota|Rep:
CG1434-PA - Drosophila melanogaster (Fruit fly)
Length = 473
Score = 235 bits (574), Expect = 1e-60
Identities = 113/183 (61%), Positives = 139/183 (75%)
Frame = +1
Query: 31 RFKTFIT*SILLQFPINMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFL 210
R T + S ++ ++Y NK+ILAPMVR+GTLPMRLLAL+ GADIVYTEEL+D K +
Sbjct: 3 RLPTILRKSFSMKTRQRLDYRNKLILAPMVRVGTLPMRLLALEMGADIVYTEELVDIKLI 62
Query: 211 RSKRRFNDILNTVDYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA 390
+S RR N L TVD+VD +DGTIVFRTC +E ++VLQ+GT D RAL V KL++ D++
Sbjct: 63 KSIRRPNPALGTVDFVDPSDGTIVFRTCAQETSRLVLQMGTSDAGRALAVGKLLQRDISG 122
Query: 391 IDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELV 570
+DINMGCPKEFSIKGGMG ALL+ PDKA IL+TL L IPVTCKIRIL E T++LV
Sbjct: 123 LDINMGCPKEFSIKGGMGAALLADPDKAAHILRTLCSGLDIPVTCKIRILPDVEGTIDLV 182
Query: 571 NKL 579
KL
Sbjct: 183 QKL 185
>UniRef50_Q9NX74 Cluster: tRNA-dihydrouridine synthase 2-like; n=27;
Eumetazoa|Rep: tRNA-dihydrouridine synthase 2-like -
Homo sapiens (Human)
Length = 493
Score = 217 bits (531), Expect = 2e-55
Identities = 106/168 (63%), Positives = 130/168 (77%)
Frame = +1
Query: 76 INMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDY 255
+++ Y NK+ILAPMVR+GTLPMRLLAL YGADIVY EELID K ++ KR N++L+TVD+
Sbjct: 6 LSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDF 65
Query: 256 VDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKG 435
V D +VFRTCE E+ +VV Q+GT D RAL VA+LVE+DVA ID+NMGCPK++S KG
Sbjct: 66 V-APDDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKG 124
Query: 436 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKL 579
GMG ALLS PDK +IL TLV PVTCKIRIL + E TL LV ++
Sbjct: 125 GMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRI 172
>UniRef50_Q00RI1 Cluster: OSIGBa0125M19.5 protein; n=9;
Magnoliophyta|Rep: OSIGBa0125M19.5 protein - Oryza
sativa (Rice)
Length = 319
Score = 206 bits (503), Expect = 4e-52
Identities = 97/166 (58%), Positives = 125/166 (75%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
M Y +K++LAPMVR+GTLP RLLA +YGADI Y EE+ID KFL+ +R N+ L T D+++
Sbjct: 1 MEYRDKLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKFLKCERVTNESLGTTDFLE 60
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGM 441
+ T+VFRTC +E+ +VV Q+GT D RALK A+LV +DVAAIDINMGCPK FS+ GGM
Sbjct: 61 RGTDTVVFRTCPQERDRVVFQMGTSDAVRALKAAQLVCNDVAAIDINMGCPKSFSLSGGM 120
Query: 442 GVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKL 579
G ALLSKP+ + IL TL NL VTCKIR+L T + T+EL ++
Sbjct: 121 GAALLSKPELIHDILTTLRRNLDTTVTCKIRLLNTRQDTVELARRV 166
>UniRef50_UPI0000E472BC Cluster: PREDICTED: similar to
tRNA-dihydrouridine synthase; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to
tRNA-dihydrouridine synthase - Strongylocentrotus
purpuratus
Length = 499
Score = 183 bits (445), Expect = 4e-45
Identities = 84/134 (62%), Positives = 106/134 (79%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
++Y NK+ILAPMVRIGTLP RLLAL+YGADIVY +ELID+K L +R N +L TVDY+
Sbjct: 36 LSYANKVILAPMVRIGTLPTRLLALEYGADIVYCQELIDFKMLTCRRHVNRVLGTVDYIS 95
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGM 441
+ D ++FRTC +E ++V Q+GT D RAL+VAK+VE DV+ IDINMGCPK+FS+KGGM
Sbjct: 96 KDD-VVIFRTCSKETDRLVFQMGTADAQRALRVAKMVEKDVSGIDINMGCPKDFSLKGGM 154
Query: 442 GVALLSKPDKAYQI 483
G ALL KPD +I
Sbjct: 155 GAALLQKPDTIKEI 168
>UniRef50_Q54QJ2 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 402
Score = 180 bits (437), Expect = 4e-44
Identities = 89/164 (54%), Positives = 121/164 (73%), Gaps = 1/164 (0%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
M+Y NK I+APMVR+GT PMR+LA YG DI Y+EELID K ++S R N+ L T+D++
Sbjct: 28 MDYYNKKIMAPMVRVGTYPMRILAYNYGCDIAYSEELIDLKLMKSTRVVNEKLKTIDFIA 87
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGM 441
+ D T+ +RT E++ + V LQLGT AL+ AK+V +D+ A+DINMGCPK FS++GGM
Sbjct: 88 K-DQTLCYRTSEKDVRNV-LQLGTASSMTALEAAKVVCNDICALDINMGCPKFFSVQGGM 145
Query: 442 GVALLSKPDKAYQILKTLVDNLS-IPVTCKIRILKTPEATLELV 570
G ALLSKP+ IL TL NL+ IP+TCKIR+L T + T++L+
Sbjct: 146 GSALLSKPETIKDILTTLKRNLNGIPITCKIRLLSTDQETIDLL 189
>UniRef50_Q9XWJ9 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 436
Score = 173 bits (422), Expect = 3e-42
Identities = 85/164 (51%), Positives = 112/164 (68%)
Frame = +1
Query: 88 YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQT 267
Y NK ILAPMVR G P+RLL LKYGAD+ YTEE++D K + + R N+ L T+DY +
Sbjct: 5 YRNKKILAPMVRAGRTPLRLLCLKYGADLCYTEEIVDKKLIEATRVVNEALGTIDYRNGD 64
Query: 268 DGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGV 447
D I+ R EEK + +LQ+GT +A K+A++V DVA ID+NMGCPK FSI GMG
Sbjct: 65 D--IILRLAPEEKGRCILQIGTNSGEKAAKIAQIVGDDVAGIDVNMGCPKPFSIHCGMGA 122
Query: 448 ALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKL 579
ALL++ +K IL +L +PVTCKIR+L PE TL+LV ++
Sbjct: 123 ALLTQTEKIVDILTSLKSAAKVPVTCKIRVLDDPEDTLKLVQEI 166
>UniRef50_A4RU69 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 345
Score = 169 bits (412), Expect = 4e-41
Identities = 88/166 (53%), Positives = 112/166 (67%), Gaps = 2/166 (1%)
Frame = +1
Query: 88 YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQT 267
Y K + APMVRI TL RLLA +YGAD+VY EEL+D +F+ +R N L +VD++D
Sbjct: 11 YTGKNVCAPMVRISTLATRLLAHEYGADLVYGEELVDKRFMHCRRILNKELGSVDFID-A 69
Query: 268 DGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGV 447
GT+ FRT EE+++VV Q+GT A ALK A+LV DVAAID+NMGCPK FS GGMG
Sbjct: 70 KGTLTFRTVPEERERVVFQVGTSSAASALKSAELVARDVAAIDVNMGCPKHFSTSGGMGA 129
Query: 448 ALLSKPDKAYQILKTLVDNL--SIPVTCKIRILKTPEATLELVNKL 579
LLS+P+ IL TL NL + VTCKIR+L++ T EL +
Sbjct: 130 RLLSQPELVRDILTTLRRNLPSTTHVTCKIRLLESERETAELAKMI 175
>UniRef50_O74731 Cluster: tRNA dihydrouridine synthase Dus2; n=1;
Schizosaccharomyces pombe|Rep: tRNA dihydrouridine
synthase Dus2 - Schizosaccharomyces pombe (Fission
yeast)
Length = 479
Score = 156 bits (379), Expect = 4e-37
Identities = 78/173 (45%), Positives = 111/173 (64%), Gaps = 7/173 (4%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRS---KRRFNDILNTVD 252
+NY NK+ LAPMVRIG LPMRLLAL+YGA++V+ E++D L +R ND +N +D
Sbjct: 4 LNYSNKVCLAPMVRIGELPMRLLALRYGANLVWGPEIVDKALLSGTPVERVVNDRINCID 63
Query: 253 YVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIK 432
+V ++FR E +++ QLG+ A++ AKLV +DVA ID+N GCPK FS+
Sbjct: 64 FVKPPSNKVLFRVHPLEANRLIFQLGSASPELAVEAAKLVANDVAGIDLNCGCPKHFSVH 123
Query: 433 GGMGVALLSKPDKAYQILKTLVDNLSIP----VTCKIRILKTPEATLELVNKL 579
GMG LL D+ IL LV+ + P ++CKIR+L+T E TL+LV ++
Sbjct: 124 AGMGAGLLKNQDRLVSILDALVNEIGKPYKISISCKIRLLETKEDTLKLVERI 176
>UniRef50_Q6C002 Cluster: Yarrowia lipolytica chromosome F of strain
CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome F of
strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 394
Score = 155 bits (376), Expect = 1e-36
Identities = 79/177 (44%), Positives = 112/177 (63%), Gaps = 11/177 (6%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
++Y K++LAPMVR G P RLL++KYGAD+V++ E++D K L R +N+ TVD+
Sbjct: 2 VSYAGKLVLAPMVRSGEFPTRLLSIKYGADLVWSPEIVDKKMLECTREWNEKTKTVDFTV 61
Query: 262 QTDG-------TIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKE 420
G I+FRT E E+ K++ Q+G+ + A+ K+V DVA ID+N GCPK
Sbjct: 62 SQQGKGNTEKKAIIFRTSEAERDKIIFQVGSANPEIAVAACKMVAKDVAGIDLNCGCPKH 121
Query: 421 FSIKGGMGVALLSKPDKAYQILKTLVDNLSIP----VTCKIRILKTPEATLELVNKL 579
FS+ GMG ALL PDK IL+ LV + P ++ KIR+L+T E TLELV++L
Sbjct: 122 FSMHAGMGAALLKTPDKLVAILEALVKEVGEPFNVSISVKIRLLETEEKTLELVDRL 178
>UniRef50_A7EHJ6 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Sclerotinia sclerotiorum 1980
Length = 513
Score = 152 bits (368), Expect = 1e-35
Identities = 89/202 (44%), Positives = 121/202 (59%), Gaps = 19/202 (9%)
Frame = +1
Query: 31 RFKTFIT*SILLQFPI---NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDW 201
R +FI SI + PI ++Y KI+LAPMVR G LP RLLAL YGAD+V+ E +D
Sbjct: 82 RLTSFIMTSIPKKVPIPRKGVDYRGKIVLAPMVRSGELPSRLLALHYGADLVWGPETVDR 141
Query: 202 KFLRSKRRFNDILNTVDYVD-----------QTDGTIVFRTCEE-EKKKVVLQLGTCDEA 345
+ + R+ N LNT+D+ + +++FR E E KK++ Q+GT D
Sbjct: 142 SMIGTTRKVNTALNTIDFTRLPSQGHKEKNANLNESLIFRLHPELEGKKLIFQIGTSDPE 201
Query: 346 RALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNL----SI 513
+A++ A++V DVA ID+N GCPK FS GGMG ALL PDK IL+ LV + I
Sbjct: 202 KAVQCARMVAADVAGIDVNAGCPKPFSTSGGMGAALLQTPDKLCAILEALVKEIVPEFEI 261
Query: 514 PVTCKIRILKTPEATLELVNKL 579
++ KIR+L+TPE T LV KL
Sbjct: 262 GISVKIRLLETPERTEALVRKL 283
>UniRef50_Q5KGP0 Cluster: Putative uncharacterized protein; n=3;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 496
Score = 151 bits (367), Expect = 1e-35
Identities = 72/167 (43%), Positives = 113/167 (67%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
+NY+NK++LAPMVR G+LPMRLL+L YGA +V++ E++D + ++R + + + Y
Sbjct: 104 INYKNKLVLAPMVRTGSLPMRLLSLYYGAGLVWSPEVVDRAIIGAERSVDPVTGVITY-H 162
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGM 441
+ G I F T EK ++ Q+G+ + A+K A+ V+ DVA ID+N GCPK FS GM
Sbjct: 163 KGQGPI-FSTHPAEKPFLIFQIGSSNPELAVKAAQTVQQDVAGIDLNCGCPKPFSTHAGM 221
Query: 442 GVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLI 582
G ALLS P+ IL+ L+D++ +P++CKIR+L T +TL L ++++
Sbjct: 222 GAALLSTPELLLDILRALLDSIPLPISCKIRLLPTQPSTLYLASRIL 268
>UniRef50_Q6BX60 Cluster: Debaryomyces hansenii chromosome B of
strain CBS767 of Debaryomyces hansenii; n=1;
Debaryomyces hansenii|Rep: Debaryomyces hansenii
chromosome B of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 374
Score = 150 bits (363), Expect = 4e-35
Identities = 79/173 (45%), Positives = 112/173 (64%), Gaps = 7/173 (4%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
+ Y K+ LAPMVR G +P RL+AL+YGAD+V+T E++D K ++ +R ND L TVD++D
Sbjct: 2 VEYSGKLALAPMVRSGEIPTRLMALRYGADLVWTPEIVDKKLIKCERVINDDLGTVDFLD 61
Query: 262 QTDGTIVFRTCE-EEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGG 438
+VFRT EE K++ Q+G+ D A++ AK+V DV ID+N GCPK FS G
Sbjct: 62 PNK-KVVFRTYPAEELGKLIFQIGSADPELAVQAAKIVAQDVDGIDLNCGCPKPFSTHSG 120
Query: 439 MGVALLSKPDKAYQILKTLVDNL----SIPVTCKIRILKTPEAT--LELVNKL 579
MG ALL+ PD IL+ LV + IP++ KIR+L + T LEL+++L
Sbjct: 121 MGAALLTTPDLLELILRNLVSEVGKVYDIPISAKIRLLDDTDVTPSLELIDRL 173
>UniRef50_Q59YG4 Cluster: Potential tRNA dihydrouridine synthase;
n=2; Saccharomycetales|Rep: Potential tRNA
dihydrouridine synthase - Candida albicans (Yeast)
Length = 433
Score = 150 bits (363), Expect = 4e-35
Identities = 78/176 (44%), Positives = 110/176 (62%), Gaps = 9/176 (5%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV- 258
+ Y NK+ LAPMVR G LP+RLL+L+YG D+++T EL+D K L+S R N LNT+DY+
Sbjct: 2 IEYANKLCLAPMVRSGELPIRLLSLRYGCDLLWTPELVDKKILQSTRIINQELNTIDYIV 61
Query: 259 ---DQTD-GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFS 426
Q+D T++FR E +++LQLG+ D A+ A+ V DV ID+N GCPK FS
Sbjct: 62 SNHQQSDKKTVIFRKHPVETGRLILQLGSSDPQLAVDAARKVIDDVDGIDLNCGCPKNFS 121
Query: 427 IKGGMGVALLSKPDKAYQILKTLVDNLSIP----VTCKIRILKTPEATLELVNKLI 582
GMG LL PDK IL LV+ + IP ++CKIR+ + + L+ K++
Sbjct: 122 THSGMGAELLKTPDKLCSILINLVEKIGIPNKKSISCKIRLFNNYDQSKNLIEKIL 177
>UniRef50_P53720 Cluster: tRNA-dihydrouridine synthase 2; n=7;
Saccharomycetales|Rep: tRNA-dihydrouridine synthase 2 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 384
Score = 147 bits (356), Expect = 3e-34
Identities = 85/176 (48%), Positives = 113/176 (64%), Gaps = 10/176 (5%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
+ Y K++LAPMVR G LP RL+AL +GAD+V++ E+ID K ++ R+ N L TVDYV
Sbjct: 2 VTYAGKLVLAPMVRAGELPTRLMALAHGADLVWSPEIIDKKLIQCVRKENTALQTVDYVV 61
Query: 262 ----QT-DGTIVFRTCEE-EKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEF 423
QT T+VFRT + E K++ Q+G+ A A + A V +DV+ IDIN GCPK F
Sbjct: 62 PSKVQTRPETLVFRTYPKLESSKLIFQIGSASPALATQAALKVINDVSGIDINAGCPKHF 121
Query: 424 SIKGGMGVALLSKPDKAYQILKTLVDNL----SIPVTCKIRILKTPEATLELVNKL 579
SI GMG ALL PD ILK LV N+ S P++ KIR+L T + TL+LV +L
Sbjct: 122 SIHSGMGSALLRTPDTLCLILKELVKNVGNPHSKPISVKIRLLDTKQDTLQLVKRL 177
>UniRef50_A5DYF6 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 504
Score = 143 bits (346), Expect = 4e-33
Identities = 78/180 (43%), Positives = 107/180 (59%), Gaps = 14/180 (7%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV- 258
+ Y NK+ LAPMVR G LP+RLLAL+YG D+V++ E ID K ++++RR N LNT+DY+
Sbjct: 7 LTYTNKVCLAPMVRSGELPIRLLALRYGCDLVWSPEYIDRKIIQTQRRVNAELNTIDYII 66
Query: 259 ---------DQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGC 411
+VFR EE K++ QLGT A++ A V DV ID+N GC
Sbjct: 67 PNNKDPSKMKHNQDNVVFRKHPEETGKLIFQLGTSTPELAVEAALRVIEDVDGIDLNCGC 126
Query: 412 PKEFSIKGGMGVALLSKPDKAYQILKTLVDNL----SIPVTCKIRILKTPEATLELVNKL 579
PK FS GGMG LL PD IL+ LV+ + P++CKIR+L EA+ L+ ++
Sbjct: 127 PKSFSTHGGMGAELLKTPDILCSILRALVEKVGNPNKKPISCKIRLLPNFEASKLLIEQI 186
>UniRef50_A2QES0 Cluster: Contig An02c0390, complete genome; n=12;
Pezizomycotina|Rep: Contig An02c0390, complete genome -
Aspergillus niger
Length = 446
Score = 140 bits (338), Expect = 4e-32
Identities = 81/186 (43%), Positives = 109/186 (58%), Gaps = 16/186 (8%)
Frame = +1
Query: 73 PIN-MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTV 249
P N ++Y K++LAPMVR G LP RL+ALKYGAD+V+ E ID + RR N T+
Sbjct: 13 PANGVDYRGKVVLAPMVRSGELPSRLIALKYGADLVWGPETIDRAMAGAIRRVNPRNGTI 72
Query: 250 DYVDQTDG----------TIVFRTCE-EEKKKVVLQLGTCDEARALKVAKLVEHDVAAID 396
++ ++++R EK K++ Q+GT A++ AKLV DVA ID
Sbjct: 73 EFTRMPSNGGRTEKAGQESVIYRLDPVREKGKLIYQIGTATPEIAVQAAKLVAGDVAGID 132
Query: 397 INMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIP----VTCKIRILKTPEATLE 564
+N GCPK FS GGMG ALL PDK IL+ LV + P ++ KIRILK PE T
Sbjct: 133 VNSGCPKPFSTSGGMGAALLKTPDKLVAILEALVKEVGTPFQIGISVKIRILKDPEETRA 192
Query: 565 LVNKLI 582
LV++L+
Sbjct: 193 LVSRLV 198
>UniRef50_Q4PAE4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 766
Score = 133 bits (321), Expect = 5e-30
Identities = 74/171 (43%), Positives = 101/171 (59%), Gaps = 4/171 (2%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
+ Y N I LAPMVRIGTLP RLL+L+YGAD+V+ E++D + +R+ N V+Y+
Sbjct: 72 LEYRNGIFLAPMVRIGTLPTRLLSLEYGADLVWGPEIVDRAIIGCERKVNPHTGVVEYL- 130
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEH--DVAAIDINMGCPKEFSIKG 435
D +F E+ +V QLG+ D A + K + DVAA+D+N GCPK FS
Sbjct: 131 -KDHKQIFSCHPIERPYLVYQLGSADPHLAFQAIKTITQADDVAAVDLNCGCPKPFSTHA 189
Query: 436 GMGVALLSKPDKAYQILKTL--VDNLSIPVTCKIRILKTPEATLELVNKLI 582
GMG +LS P LK + + VTCKIR+L T E TLELV+K++
Sbjct: 190 GMGANMLSTPILLCNTLKAMRRAAPAHVAVTCKIRLLPTQEKTLELVDKIV 240
>UniRef50_Q1DPY5 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 453
Score = 132 bits (319), Expect = 8e-30
Identities = 72/181 (39%), Positives = 110/181 (60%), Gaps = 15/181 (8%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDY-- 255
++Y KI+LAPMVR G P R+++LKYGAD+V+ E +D + +KRR N + ++Y
Sbjct: 18 VDYRGKIVLAPMVRSGETPSRIVSLKYGADLVWGPETVDRAIIGAKRRINPRNSMIEYTR 77
Query: 256 VDQTDG--------TIVFRTCE-EEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMG 408
+ G ++++R E+ K++ QLGT + + A++ AK+V DV+ ID+N G
Sbjct: 78 IPSNGGQPNKPAQESVLYRIDPVRERGKLIFQLGTANPSLAVEAAKVVAADVSGIDVNSG 137
Query: 409 CPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIP----VTCKIRILKTPEATLELVNK 576
CPK FS GGMG ALL PD+ IL+ LV+ + P ++ KIR+L PE T LV +
Sbjct: 138 CPKPFSTSGGMGAALLQTPDRLVSILEALVEEIGKPYEIGISVKIRLLAEPERTEALVTR 197
Query: 577 L 579
+
Sbjct: 198 V 198
>UniRef50_A6R3V4 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 461
Score = 126 bits (305), Expect = 4e-28
Identities = 77/182 (42%), Positives = 105/182 (57%), Gaps = 16/182 (8%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
MN++ +LAPMVR G LP RLLALKYGAD+V+ E ID + RR N + V++
Sbjct: 1 MNHQR--VLAPMVRSGELPSRLLALKYGADLVWGPETIDRALIGCTRRINPRNSMVEFTR 58
Query: 262 -QTDG----------TIVFRTC-EEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINM 405
++G +I++R E K+V Q+GT A++ AK++ DVA ID+N
Sbjct: 59 LPSNGGRENNQAAKESIIYRLDPHRESGKLVFQIGTASPDLAVQAAKIIAADVAGIDVNA 118
Query: 406 GCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIP----VTCKIRILKTPEATLELVN 573
GCPK FS GGMG ALL PD+ IL LV + P ++ KIR+L PE T +LV
Sbjct: 119 GCPKPFSTTGGMGAALLQTPDRLVSILTALVQQVGTPYQIGISVKIRLLADPERTRDLVT 178
Query: 574 KL 579
+L
Sbjct: 179 RL 180
>UniRef50_A2DYY3 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 313
Score = 105 bits (252), Expect = 1e-21
Identities = 56/165 (33%), Positives = 93/165 (56%)
Frame = +1
Query: 88 YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQT 267
Y+NK+I APMVR +L RL L+YGAD+V++ L+D + S +D ++ V+
Sbjct: 9 YKNKLIAAPMVRGSSLSFRLACLEYGADLVFSPGLVDLAIIGSTMEKDDNNISLIKVENG 68
Query: 268 DGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGV 447
+F T EE+ K+++QL T D A+K A + + IDIN GCP+ F+ G G
Sbjct: 69 HNRRIFHTTAEERGKLIIQLITVDGPNAIKAADMCTEFASGIDINCGCPESFACHRGGGS 128
Query: 448 ALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLI 582
+ + + A ++KTL N +P++ K+R+ T E +L+ ++
Sbjct: 129 KM--QLESAVDVVKTLKMNSPLPISVKMRVKDTVEESLQFAKAMV 171
>UniRef50_Q38BB4 Cluster: TRNA-dihydrouridine synthase 2, putative;
n=3; Trypanosoma|Rep: TRNA-dihydrouridine synthase 2,
putative - Trypanosoma brucei
Length = 435
Score = 99 bits (238), Expect = 5e-20
Identities = 66/189 (34%), Positives = 97/189 (51%), Gaps = 28/189 (14%)
Frame = +1
Query: 88 YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFN----------DI 237
+ K ILAPMVR+GT+ R+ GADIV++EE++ K +R KR +
Sbjct: 4 FNGKTILAPMVRVGTVGFRVFCAAQGADIVFSEEVVASKLIRCKREVRTYTGCPCSMVEF 63
Query: 238 LNTVDYVDQTDGTIVFRT-----CEE--EKKKVVLQLGTCDEARALKVAKLVEHDVAAID 396
++ Y ++ +I F T C E VVLQLG + A + A L DV ID
Sbjct: 64 VSYEPYKNKFKRSIAFATVARGGCNSQGEGAPVVLQLGVAEPAIGARAALLCVDDVDGID 123
Query: 397 INMGCPKEFSIKGGMGVALLSKPDKAYQIL-----------KTLVDNLSIPVTCKIRILK 543
+NMGCPK+FS+ GMG AL+ P +A IL K + +P++ K R+L
Sbjct: 124 VNMGCPKKFSVDNGMGAALMRDPARAAAILVAVDEAVNSPEKVVARRRRVPISFKTRLLD 183
Query: 544 TPEATLELV 570
T +AT +++
Sbjct: 184 TADATAQML 192
>UniRef50_Q24833 Cluster: Putative nitrogen fixation regulatory
protein-3 homologue; n=3; Entamoeba histolytica|Rep:
Putative nitrogen fixation regulatory protein-3
homologue - Entamoeba histolytica
Length = 165
Score = 96.7 bits (230), Expect = 5e-19
Identities = 57/144 (39%), Positives = 83/144 (57%)
Frame = +1
Query: 148 LALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVFRTCEEEKKKVVLQL 327
+AL GA V+TEEL+ + KR N + Y+ + D + + E++ K +LQL
Sbjct: 1 MALDAGASAVFTEELVSKRLCECKRVENS--GIIQYIHKNDVMLTLKP--EQQSKTILQL 56
Query: 328 GTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNL 507
GT D ++K L++ +V IDIN+GC FS KG MG AL+ DK +I+K LV L
Sbjct: 57 GTFDVESSVKCVSLIQ-EVCGIDINLGCGMWFSTKGEMGQALVDNRDKLEKIVKALV-GL 114
Query: 508 SIPVTCKIRILKTPEATLELVNKL 579
S P++ KIR+ +T E TLE + L
Sbjct: 115 SKPISAKIRLQQTHEETLEFIQWL 138
>UniRef50_A2F0D1 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 333
Score = 90.6 bits (215), Expect = 3e-17
Identities = 52/159 (32%), Positives = 84/159 (52%)
Frame = +1
Query: 88 YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQT 267
Y KI PMVR LP RL+ L+ GAD VY L S N+ T+ +
Sbjct: 9 YRGKIFAGPMVRASNLPFRLMCLENGADGVYGPATSVDSILASHYDENEDPYTMYFGWPK 68
Query: 268 DGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGV 447
+ + F T +EK K++ Q+ T D ++A++ A +V AID+N GCP+ F+ G G
Sbjct: 69 NPHVHFHTDPKEKGKLIFQILTNDASKAVQAASVVVKFADAIDLNCGCPESFATSRGTGS 128
Query: 448 ALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLE 564
+L+S+P+ ++ L N ++P++ K RI E +++
Sbjct: 129 SLMSEPEIVADVVSALRRNYNVPISVKHRIHHNIEESIQ 167
>UniRef50_A0EG06 Cluster: Chromosome undetermined scaffold_94, whole
genome shotgun sequence; n=4; Intramacronucleata|Rep:
Chromosome undetermined scaffold_94, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 360
Score = 86.2 bits (204), Expect = 7e-16
Identities = 57/161 (35%), Positives = 80/161 (49%)
Frame = +1
Query: 97 KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 276
K I APMV L R+L KYG + YT L SK Y D+
Sbjct: 19 KFICAPMVDQSELAFRMLTRKYGTTLAYTPMLHSRIMTESK----------SYKDE---- 64
Query: 277 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 456
F TC E++ + QL D +K A +++ AIDIN+GCP+ + KG G LL
Sbjct: 65 -FFTTCPEDRP-LFAQLCGHDPQVLIKAALMIQDQCDAIDINLGCPQGIARKGLYGAYLL 122
Query: 457 SKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKL 579
K ++ I+K L N+++PVTCKIR+ K + TL+L +
Sbjct: 123 EKREQVLTIVKELKQNINVPVTCKIRMFKDRKRTLDLTKDI 163
>UniRef50_UPI0000499E32 Cluster: conserved hypothetical protein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 339
Score = 82.6 bits (195), Expect = 9e-15
Identities = 47/159 (29%), Positives = 83/159 (52%)
Frame = +1
Query: 103 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIV 282
ILAPMV L R+L ++G ++ YT ++ F+ SK N+++N++D +Q
Sbjct: 25 ILAPMVDGSDLTFRILVRRHGVNLCYTPMVLSKMFVESKVYRNEVVNSLDPKEQP----- 79
Query: 283 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSK 462
+++Q+ D + AK ++ AIDIN+GCP++ + KG G L
Sbjct: 80 ----------IIIQIVGSDANEMARTAKFLQSYCDAIDINLGCPQKIAQKGNYGAYLALD 129
Query: 463 PDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKL 579
D +I+ +++ ++IPV CK+R+ + E T+ V L
Sbjct: 130 FDHTKEIVNAVIEAVNIPVYCKVRVFEDEEKTMRFVEML 168
>UniRef50_Q5CSA9 Cluster: Dus1p, tRNA dihydrouridine synthase; n=2;
Cryptosporidium|Rep: Dus1p, tRNA dihydrouridine synthase
- Cryptosporidium parvum Iowa II
Length = 409
Score = 82.6 bits (195), Expect = 9e-15
Identities = 56/164 (34%), Positives = 84/164 (51%), Gaps = 3/164 (1%)
Frame = +1
Query: 97 KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 276
K +LAPMV L RL+ KYG D+ Y S + + + + +T+
Sbjct: 20 KTVLAPMVDGSELAFRLICKKYGCDLGY-----------SPMYHSGLFSKLQGYRETN-- 66
Query: 277 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 456
F+TCEE+ +V G D +K +K ++ V IDIN GCP+ + +G G LL
Sbjct: 67 --FQTCEEDDPMIVQFCGN-DPETLVKASKFIDDKVKGIDINFGCPQNIAKRGNYGAFLL 123
Query: 457 SKPDKAYQILKTLVD-NLSIPVTCKIRIL--KTPEATLELVNKL 579
S PD +I+ TL + +L PV+CKIRIL + T+ L+ +L
Sbjct: 124 SNPDLMERIISTLSESDLKCPVSCKIRILDHHDLQPTINLIKRL 167
>UniRef50_Q9FH91 Cluster: Gb|AAF51525.1; n=6; Magnoliophyta|Rep:
Gb|AAF51525.1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 423
Score = 81.8 bits (193), Expect = 2e-14
Identities = 58/161 (36%), Positives = 78/161 (48%)
Frame = +1
Query: 97 KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 276
K I+APMV LP RLL KYGA YT L R F + T Y +Q
Sbjct: 89 KYIVAPMVDNSELPFRLLCQKYGAQAAYTPML-------HSRIFTE---TEKYRNQE--- 135
Query: 277 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 456
F TC+E++ V Q D L+ AK VE +DIN+GCP+ + +G G L+
Sbjct: 136 --FTTCKEDRPLFV-QFCANDPDTLLEAAKRVEPYCDYVDINLGCPQRIARRGNYGAFLM 192
Query: 457 SKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKL 579
+++ L NL++PV+CKIRI E TL+ L
Sbjct: 193 DNLPLVKSLVEKLAQNLNVPVSCKIRIFPNLEDTLKYAKML 233
>UniRef50_Q54CU9 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 671
Score = 80.6 bits (190), Expect = 4e-14
Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 2/160 (1%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
+N+EN++ILAP+ +G LP R + + GADI E + K L + +L
Sbjct: 320 INFENQLILAPLTTVGNLPFRRICKRLGADITIGEMALTTKLLEGTKSELALLKR----- 374
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFSIKG 435
CE+ K V G+ +A A+K A+ +E+++ A +DIN GCP +
Sbjct: 375 --------HPCED--KFGVQICGSYVDA-AVKCAEFIENEIDADFVDINSGCPIDLVCNM 423
Query: 436 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEA 555
G G AL+ +P K Q+L+ + +LS P T KIRI K+ +A
Sbjct: 424 GAGAALMERPKKVEQLLRGISSSLSCPTTIKIRIGKSEDA 463
>UniRef50_Q54ES7 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 344
Score = 80.2 bits (189), Expect = 5e-14
Identities = 49/158 (31%), Positives = 82/158 (51%)
Frame = +1
Query: 103 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIV 282
I APMVR LP R+L K+G DI YT ++ +F RS+ D T++ +D+
Sbjct: 58 IQAPMVRFSRLPFRMLVKKWGCDITYTPMIMAAEFNRSEAA-RDSDFTINKLDEP----- 111
Query: 283 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSK 462
+++Q G + + A+ V+ IDIN GCP+ + +K G G LL
Sbjct: 112 ----------LIVQFGVNNAEELVSAAEKVKDYCQGIDINCGCPQRWVMKEGFGANLLLH 161
Query: 463 PDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNK 576
P++ Y ++K + + + IP++ KIR+ + T+EL +
Sbjct: 162 PERIYDMVKQINNRVPIPISIKIRVQSDLKDTIELAKR 199
>UniRef50_Q8PX79 Cluster: NifR3-like protein; n=5; Archaea|Rep:
NifR3-like protein - Methanosarcina mazei
(Methanosarcina frisia)
Length = 323
Score = 80.2 bits (189), Expect = 5e-14
Identities = 53/157 (33%), Positives = 82/157 (52%), Gaps = 1/157 (0%)
Frame = +1
Query: 100 IILAPMVRIGTLPMRLLALKYGADIVYTEEL-IDWKFLRSKRRFNDILNTVDYVDQTDGT 276
++LAPM + L RLL +YGAD+ YTE + +D S++ F L++ + D+ G
Sbjct: 17 LLLAPMADVTNLAFRLLCRRYGADLTYTEMINVDALLNESRKSFIKGLSSEE--DRPFGV 74
Query: 277 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 456
+ C ++ K+ L + +E E+ ID+NMGCP G G ALL
Sbjct: 75 QLVGGCPDKLKRAALFI---EE----------EYRPEIIDVNMGCPARCITGAGCGSALL 121
Query: 457 SKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLEL 567
+ P+ Y I+ L ++L PV+ KIR+L E TLE+
Sbjct: 122 NSPELVYSIILELTESLDTPVSAKIRLLGREEKTLEI 158
>UniRef50_Q5A4Y0 Cluster: Potential tRNA dihydrouridine synthase;
n=2; Saccharomycetales|Rep: Potential tRNA
dihydrouridine synthase - Candida albicans (Yeast)
Length = 339
Score = 79.8 bits (188), Expect = 6e-14
Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Frame = +1
Query: 103 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIV 282
I PMVR LP R L Y DIVYT ++ +F+R N++ + D+
Sbjct: 29 IAGPMVRYSKLPFRELCRFYDVDIVYTPMILAREFVR-----NEVARSTDF--------- 74
Query: 283 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSK 462
T + K V++Q+G + +K +++ V I IN GCP + ++ G+G AL+S
Sbjct: 75 --TTNDSDKCVIVQVGVNNVDDFMKFIEMIHPFVDGIGINCGCPIKEQVREGIGAALMSD 132
Query: 463 PDKAYQILKTLVDNL--SIPVTCKIRILKTPEATLELVNKLI 582
PD +++KT D SI + KIRI + T++ VNK++
Sbjct: 133 PDLVAELIKTAKDKYGDSICIDTKIRIHRDINQTIDFVNKVV 174
>UniRef50_Q54XQ6 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 435
Score = 79.4 bits (187), Expect = 8e-14
Identities = 55/171 (32%), Positives = 83/171 (48%)
Frame = +1
Query: 67 QFPINMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNT 246
+F N+ K +APMV L R+L KYGAD+VYT F K D
Sbjct: 43 EFFRNVLKSPKKTVAPMVDHTFLAFRMLCRKYGADMVYTPMFHSKNFATCKTYRRD---- 98
Query: 247 VDYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFS 426
+ TC E++ VV G + +K AK +E AID+N+GCP++ +
Sbjct: 99 -----------YWSTCPEDRPLVVQFCGN-EPEWVVKAAKYIEDHCDAIDLNLGCPQQIA 146
Query: 427 IKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKL 579
+G G LL KP I++ L ++ +P+ CKIR+L + T++L +L
Sbjct: 147 RRGNYGSFLLDKPHIILPIVQELHKHIKVPIFCKIRLLPNLDDTIKLALQL 197
>UniRef50_P53759 Cluster: tRNA-dihydrouridine synthase 1; n=11;
Saccharomycetales|Rep: tRNA-dihydrouridine synthase 1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 423
Score = 79.4 bits (187), Expect = 8e-14
Identities = 55/160 (34%), Positives = 81/160 (50%)
Frame = +1
Query: 103 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIV 282
I+APMV L R+L+ +YGA + YT L F SK+ D +++D G+ V
Sbjct: 32 IVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLD------GSSV 85
Query: 283 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSK 462
R +V+Q D L AKLVE A+D+N+GCP+ + KG G L+ +
Sbjct: 86 DRP-------LVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEE 138
Query: 463 PDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLI 582
D + ++ TL NL +PVT KIRI E +L ++
Sbjct: 139 WDLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVL 178
>UniRef50_O74553 Cluster: tRNA dihydrouridine synthase Dus4; n=1;
Schizosaccharomyces pombe|Rep: tRNA dihydrouridine
synthase Dus4 - Schizosaccharomyces pombe (Fission
yeast)
Length = 326
Score = 77.4 bits (182), Expect = 3e-13
Identities = 58/169 (34%), Positives = 81/169 (47%), Gaps = 2/169 (1%)
Frame = +1
Query: 70 FPINMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTV 249
F IN I APMVR LP R L Y DIVYT ++ +FL K R+ D
Sbjct: 12 FEINKGKRPVHIAAPMVRYSKLPFRQLVRDYNTDIVYTPMILAKEFLHPKGRYFD----- 66
Query: 250 DYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSI 429
F T + + ++LQ G D K A+LV V I IN GCP+ ++I
Sbjct: 67 -----------FSTNDADAS-LILQFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAI 114
Query: 430 KGGMGVALLSKPDKAYQILKTLVDNL--SIPVTCKIRILKTPEATLELV 570
+ G+G ALL +P+K +++++ + L S KIRI K T L+
Sbjct: 115 QEGIGSALLDEPEKVHKLVRAVKSTLGESFCTEVKIRIAKDLNKTRHLM 163
>UniRef50_Q9HGN6 Cluster: tRNA dihydrouridine synthase Dus1; n=1;
Schizosaccharomyces pombe|Rep: tRNA dihydrouridine
synthase Dus1 - Schizosaccharomyces pombe (Fission
yeast)
Length = 399
Score = 76.2 bits (179), Expect = 8e-13
Identities = 55/162 (33%), Positives = 77/162 (47%)
Frame = +1
Query: 97 KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 276
K ILAPMV LP R+LA + GAD+ Y+ F S+ N + +T
Sbjct: 19 KRILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRNKVFST---------- 68
Query: 277 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 456
RT EE+ ++ G D LK AK+ A+D+N+GCP+ + KG G L
Sbjct: 69 ---RTIPEERPLIIQFCGN-DPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFLQ 124
Query: 457 SKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLI 582
+ I+ L LSIPVT KIRI P+ TL+ ++
Sbjct: 125 ENWNLIESIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMIL 166
>UniRef50_Q0YFW9 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=8; Desulfuromonadales|Rep: Dihydrouridine
synthase TIM-barrel protein nifR3 - Geobacter sp. FRC-32
Length = 343
Score = 72.9 bits (171), Expect = 7e-12
Identities = 52/152 (34%), Positives = 76/152 (50%)
Frame = +1
Query: 79 NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 258
++ EN +ILAPM + LPMR+LA + GA + +TE + +R ++ D+L D +
Sbjct: 26 SLQLENNLILAPMAGLTNLPMRILARECGAALTFTEMISVNGLVREGKKTFDLLRR-DPM 84
Query: 259 DQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGG 438
D+ G +F D + A+LVE IDINMGCP + G
Sbjct: 85 DRPMGIQIFGD---------------DPQLLAEGARLVEQYGELIDINMGCPVRKVVGSG 129
Query: 439 MGVALLSKPDKAYQILKTLVDNLSIPVTCKIR 534
G ALL +P K I+K + S+P+T KIR
Sbjct: 130 AGSALLREPAKVGMIIKAVRKATSLPLTIKIR 161
>UniRef50_A3AVU4 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 190
Score = 72.9 bits (171), Expect = 7e-12
Identities = 32/51 (62%), Positives = 41/51 (80%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFND 234
M Y +K++LAPMVR+GTLP RLLA +YGADI Y EE+ID KFL+ +R N+
Sbjct: 1 MEYRDKLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKFLKCERVTNE 51
>UniRef50_A5K1E0 Cluster: tRNA-dihydrouridine synthase, putative;
n=5; Plasmodium|Rep: tRNA-dihydrouridine synthase,
putative - Plasmodium vivax
Length = 340
Score = 72.9 bits (171), Expect = 7e-12
Identities = 43/146 (29%), Positives = 74/146 (50%)
Frame = +1
Query: 97 KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 276
K ILAPMV + L RLL Y + +T L F+ ++
Sbjct: 27 KHILAPMVDLSELAFRLLCRNYNCHLTFTPMLHAKNFVEHEKYRKS-------------- 72
Query: 277 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 456
F++CE++ + V+ Q + L + ++++V A+D+N+GCP++ + KG G LL
Sbjct: 73 -YFQSCEKD-EPVIAQFCGNNSKIILNAIEYIKNEVNAVDLNLGCPQQIAKKGNYGAFLL 130
Query: 457 SKPDKAYQILKTLVDNLSIPVTCKIR 534
K D+ ++ + +N +IP+TCKIR
Sbjct: 131 QKHDEVVNLVSDITNNCNIPITCKIR 156
>UniRef50_Q4Q231 Cluster: Dihydrouridine synthase domain
protein-like protein; n=3; Leishmania|Rep:
Dihydrouridine synthase domain protein-like protein -
Leishmania major
Length = 455
Score = 71.7 bits (168), Expect = 2e-11
Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 35/195 (17%)
Frame = +1
Query: 103 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKR---RFNDILNTV-DYVDQTD 270
ILAPMVR+ + R L +GAD+V+TEE++ K +R R+ + + +YV
Sbjct: 28 ILAPMVRVCSPGFRALCGAHGADVVFTEEVVAAKLATCQREVVRYPTVDTPMAEYVSYDP 87
Query: 271 ------GTIVFRTC-------------EEEKKKVVLQLGTCDEARALKVAKLVEHDVAAI 393
T+V T + VLQLG D AR A + +D+ I
Sbjct: 88 FKHTYKRTVVLSTPVLPDTTYGGQKADRISAPRTVLQLGVADPARGAAAALVCSNDIDGI 147
Query: 394 DINMGCPKEFSIKGGMGVALLSKPDKAYQILKTL---VDNLS---------IPVTCKIRI 537
DINMGCPK+FS+ G G AL+ +P+ I++ + V++ S + V+ K R+
Sbjct: 148 DINMGCPKKFSVHNGFGAALMKRPEVGGAIVRAVHGAVNSDSNVEARGGKRVAVSLKTRL 207
Query: 538 LKTPEATLELVNKLI 582
T EAT+ ++ ++
Sbjct: 208 QDTAEATVGMLRAIL 222
>UniRef50_Q8SUV4 Cluster: Putative uncharacterized protein
ECU07_1610; n=1; Encephalitozoon cuniculi|Rep: Putative
uncharacterized protein ECU07_1610 - Encephalitozoon
cuniculi
Length = 341
Score = 70.9 bits (166), Expect = 3e-11
Identities = 50/153 (32%), Positives = 75/153 (49%)
Frame = +1
Query: 106 LAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVF 285
+APMV R L+ ++GA+I YTE + FLR R N + N + D +V
Sbjct: 15 VAPMVGNSEEAWRRLSKRHGANIFYTEMVHCDSFLRGSR--NPVKNRWYTTSEGDRPLVV 72
Query: 286 RTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKP 465
+ C G E L+ A +++ AID+N GCP++ + KGG G L
Sbjct: 73 QIC-----------GNSPEVM-LEAALIIQDHCDAIDVNFGCPQKVARKGGYGAYLQENW 120
Query: 466 DKAYQILKTLVDNLSIPVTCKIRILKTPEATLE 564
+I+K L L++PV CKIR+ + E T+E
Sbjct: 121 KLTGEIVKVLSSGLNVPVFCKIRVFGSIEKTVE 153
>UniRef50_Q4PG83 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 527
Score = 70.1 bits (164), Expect = 5e-11
Identities = 43/166 (25%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Frame = +1
Query: 103 ILAPMVRIGTLPMRLLALKYGADIVYTEEL-----IDWKFLRSKRRFNDILNTVDYVDQT 267
++APMV L R+L+ +YG+D+VYT + D + K ++ ++ ++ ++
Sbjct: 52 VVAPMVDQSELAWRILSRRYGSDLVYTPMINAKLFADENSKKKKVKYQEVNFNREHAEEG 111
Query: 268 DGTIVFRTCEEE--------KKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEF 423
+ + E + + +Q + D LK AK+VE A+D+N+GCP+
Sbjct: 112 ASSPIASLLSNEGEGSSKDTDRPLFVQFCSNDPETLLKAAKVVEDRCDAVDLNLGCPQHI 171
Query: 424 SIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATL 561
+ +G G L+ + ++ L NL +PVT K+R+ ++ E T+
Sbjct: 172 ARRGHYGSYLMEDWSLIFSLINILHVNLKVPVTAKMRVYESVEKTI 217
>UniRef50_Q090Q9 Cluster: TRNA-dihydrouridine synthase B; n=2;
Cystobacterineae|Rep: TRNA-dihydrouridine synthase B -
Stigmatella aurantiaca DW4/3-1
Length = 369
Score = 69.7 bits (163), Expect = 7e-11
Identities = 50/148 (33%), Positives = 74/148 (50%), Gaps = 1/148 (0%)
Frame = +1
Query: 94 NKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDG 273
N ILAPM + P R++A K+GA + TE + +R+ +R T+ Y+
Sbjct: 43 NPYILAPMAGVSERPFRVIAFKWGAALCPTELVSAQGLMRANQR------TLKYL----- 91
Query: 274 TIVFRTCEEEKKKVVLQL-GTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVA 450
R E ++ LQ+ G EA A H IDINMGCP + K G G A
Sbjct: 92 ----RFSPEVERPYSLQIFGGEPEAMAQAALVGKAHGAQIIDINMGCPVKKVTKNGAGSA 147
Query: 451 LLSKPDKAYQILKTLVDNLSIPVTCKIR 534
L+ +P +A +I++ + + +PVTCKIR
Sbjct: 148 LMCEPLRAARIVQAIAEATGLPVTCKIR 175
>UniRef50_Q9VPM1 Cluster: CG3645-PA, isoform A; n=2; Diptera|Rep:
CG3645-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 505
Score = 68.5 bits (160), Expect = 2e-10
Identities = 47/161 (29%), Positives = 76/161 (47%)
Frame = +1
Query: 97 KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 276
+ ++APMV L R+L +YGA++ Y+ F + D L
Sbjct: 29 RYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKYRKDAL------------ 76
Query: 277 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 456
+TC E++ ++ G D + L A L + A+DIN+GCP+ + +G G L
Sbjct: 77 ---QTCPEDRPLIIQFCGN-DAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQ 132
Query: 457 SKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKL 579
+ + +I+ TL L++PVTCKIRI + E T+ L
Sbjct: 133 DEWELLTEIVSTLHAKLAVPVTCKIRIFEDLEKTIRYAKML 173
>UniRef50_Q2H6D9 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 464
Score = 68.1 bits (159), Expect = 2e-10
Identities = 34/82 (41%), Positives = 48/82 (58%)
Frame = +1
Query: 337 DEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIP 516
D L AK+ A+D+N+GCP+ + KG G L D +Q++K L +NL IP
Sbjct: 120 DPQALLNAAKIAAPYCDAVDLNLGCPQGIAKKGHYGSFLQEDQDLIHQLIKILHENLDIP 179
Query: 517 VTCKIRILKTPEATLELVNKLI 582
VT KIRIL+T EATL+ ++
Sbjct: 180 VTAKIRILETKEATLKYAQNVL 201
>UniRef50_Q9CLW3 Cluster: tRNA-dihydrouridine synthase B; n=17;
Pasteurellaceae|Rep: tRNA-dihydrouridine synthase B -
Pasteurella multocida
Length = 332
Score = 67.7 bits (158), Expect = 3e-10
Identities = 48/149 (32%), Positives = 73/149 (48%), Gaps = 1/149 (0%)
Frame = +1
Query: 91 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 270
+N+I LAPM I P R + YGA + ++E +++T V T+
Sbjct: 9 KNRIFLAPMAGITDQPFRRICTHYGAGLTFSE----------------MMSTNPQVWHTE 52
Query: 271 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKL-VEHDVAAIDINMGCPKEFSIKGGMGV 447
+ + +E +Q+ CD K A++ VE+ IDINMGCP + + G
Sbjct: 53 KSKLRLAHHQEAGINAVQIAGCDPDEMAKAAQINVEYGAEIIDINMGCPAKKVNRKMAGS 112
Query: 448 ALLSKPDKAYQILKTLVDNLSIPVTCKIR 534
ALL PD QIL +V ++++PVT KIR
Sbjct: 113 ALLQYPDLVKQILNKVVKSVTVPVTLKIR 141
>UniRef50_Q8YAB9 Cluster: Lmo0227 protein; n=55; Bacteria|Rep:
Lmo0227 protein - Listeria monocytogenes
Length = 331
Score = 67.3 bits (157), Expect = 4e-10
Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 2/169 (1%)
Frame = +1
Query: 79 NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 258
N+ +N++++APM I RL ++GA +V E + D + D+L Y+
Sbjct: 6 NVEIKNQVVVAPMAGISNSAFRLTVKEFGAGLVCCEMISDKGIAYRNAKTLDML----YI 61
Query: 259 DQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFSIK 432
D E++K + LQ+ ++ ++ AK V + A IDINMGCP IK
Sbjct: 62 D------------EKEKPLSLQIFGGEKETLVEAAKFVAENTTADIIDINMGCPVNKIIK 109
Query: 433 GGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKL 579
G L P+K Y ++ +VD + PVT K+RI E + N L
Sbjct: 110 CEAGAKWLLDPNKVYDMVAAVVDAVDKPVTVKMRIGWDEEHVFAIENAL 158
>UniRef50_Q4D174 Cluster: Dihydrouridine synthase (Dus), putative;
n=2; Trypanosoma cruzi|Rep: Dihydrouridine synthase
(Dus), putative - Trypanosoma cruzi
Length = 548
Score = 66.9 bits (156), Expect = 5e-10
Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 13/172 (7%)
Frame = +1
Query: 103 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIV 282
++ PMV LP R+L +YGA + Y+ L F +S + +T + + T
Sbjct: 99 VVGPMVDQSELPFRMLCRRYGATLAYSPMLHARSFAQSAQYRARYFSTTPHRAELAMTAT 158
Query: 283 F-----------RTCEEEKKKVVLQLGTC--DEARALKVAKLVEHDVAAIDINMGCPKEF 423
RT + E+ L + C D L A+ VE D A+D+N+GCP+
Sbjct: 159 ASGEGEAAEDAGRTSDGEETDHPLFVQFCGNDADTLLAAARHVEDDCEAVDVNLGCPQGI 218
Query: 424 SIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKL 579
+ +G G L+ D+ + IL L L +PVT K+R+ TL+ L
Sbjct: 219 ARRGHYGSFLMEDWDRVHNILHCLAVELRVPVTAKMRVFDDDALTLKYAEML 270
>UniRef50_A7AQM0 Cluster: Dihydrouridine synthase, putative; n=1;
Babesia bovis|Rep: Dihydrouridine synthase, putative -
Babesia bovis
Length = 355
Score = 66.9 bits (156), Expect = 5e-10
Identities = 42/146 (28%), Positives = 73/146 (50%)
Frame = +1
Query: 97 KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 276
+ + APMV LP RLL +Y D+ YT L F+ +++
Sbjct: 13 RYVAAPMVNQSELPFRLLCRRYNVDLTYTPMLHGRIFVENEKY---------------RA 57
Query: 277 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 456
+ F+T +++ + ++ Q+ D + A+L++ V+A+D+N+GCP+ + G G LL
Sbjct: 58 VHFQTSDDD-RPLIAQVCGDDAGTITQAARLLKGHVSAVDLNLGCPQAIAKDGHYGSFLL 116
Query: 457 SKPDKAYQILKTLVDNLSIPVTCKIR 534
+PD I+ + + I VTCKIR
Sbjct: 117 DEPDLVTGIVSRVTREVGIAVTCKIR 142
>UniRef50_Q7RX85 Cluster: Putative uncharacterized protein
NCU00065.1; n=3; Pezizomycotina|Rep: Putative
uncharacterized protein NCU00065.1 - Neurospora crassa
Length = 629
Score = 66.9 bits (156), Expect = 5e-10
Identities = 40/111 (36%), Positives = 57/111 (51%)
Frame = +1
Query: 250 DYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSI 429
DYV DG F + + +Q D A L AKLV A+D+N+GCP+ +
Sbjct: 122 DYVPFLDGNPEF------DRSLFVQFCANDPAYLLSAAKLVAPYCDAVDLNLGCPQGIAK 175
Query: 430 KGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLI 582
+G G L + ++++ TL L IPVT KIRIL T EATL+ ++
Sbjct: 176 RGQYGSFLQENQELIFELINTLHKELDIPVTAKIRILDTKEATLKYAQNVL 226
>UniRef50_P37567 Cluster: Probable tRNA-dihydrouridine synthase 1;
n=31; Bacilli|Rep: Probable tRNA-dihydrouridine synthase
1 - Bacillus subtilis
Length = 333
Score = 66.1 bits (154), Expect = 8e-10
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 2/155 (1%)
Frame = +1
Query: 79 NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 258
++ +N+++LAPM + RL ++GA +V E + D L + R +L Y+
Sbjct: 6 DIQLKNRVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILYNNARTMGML----YI 61
Query: 259 DQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFSIK 432
D E +K + LQ+ + ++ AK V+ + A IDINMGCP K
Sbjct: 62 D------------EREKPLSLQIFGGKKETLVEAAKFVDQNTTADIIDINMGCPVPKITK 109
Query: 433 GGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
G L PDK Y+++ +VD ++ PVT K+R+
Sbjct: 110 CDAGAKWLLDPDKIYEMVSAVVDAVNKPVTVKMRM 144
>UniRef50_A5D5Q0 Cluster: TRNA-dihydrouridine synthase; n=5;
Firmicutes|Rep: TRNA-dihydrouridine synthase -
Pelotomaculum thermopropionicum SI
Length = 324
Score = 65.7 bits (153), Expect = 1e-09
Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 1/148 (0%)
Frame = +1
Query: 94 NKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDG 273
N +I APM I R+LA ++G +V TE + D L + +L+
Sbjct: 10 NPVIAAPMAGITDKAFRILAREFGCGLVCTEMVSDQALLHGNPKTCSLLDVAG------- 62
Query: 274 TIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAI-DINMGCPKEFSIKGGMGVA 450
E V +Q+ + A + A + E A I DINMGCP +K G G A
Sbjct: 63 ---------EAGPVSVQIFGSNAACMAEAAGIAESRGAGIIDINMGCPTPKIVKNGEGAA 113
Query: 451 LLSKPDKAYQILKTLVDNLSIPVTCKIR 534
L+ +P+KA +I++ +V+ + +PVT K+R
Sbjct: 114 LMREPEKAARIVRAVVERVKVPVTVKMR 141
>UniRef50_Q6AJZ5 Cluster: TRNA-dihydrouridine synthase; n=1;
Desulfotalea psychrophila|Rep: TRNA-dihydrouridine
synthase - Desulfotalea psychrophila
Length = 328
Score = 65.3 bits (152), Expect = 1e-09
Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 2/157 (1%)
Frame = +1
Query: 70 FPINMN-YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNT 246
F I N + + +LAP+ L RLL ++GAD +E + +++R ++L +
Sbjct: 2 FTIGPNQFSSPFVLAPLAGYTDLSFRLLCHQFGADYTVSEMISCHGLFYNQQRTLEMLAS 61
Query: 247 VDYVDQTDGTIVFRTCEEEKKKVVLQL-GTCDEARALKVAKLVEHDVAAIDINMGCPKEF 423
+ E++ V QL G + A L + IDINMGCP
Sbjct: 62 LP----------------EERPVSFQLFGAEPDIMAKATLILNDFQPDMIDINMGCPVRK 105
Query: 424 SIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIR 534
K G G AL+S P+ AY +++++VDN IPVT K R
Sbjct: 106 VTKKGAGAALMSTPELAYDVIRSVVDNTDIPVTVKFR 142
>UniRef50_UPI00015B403F Cluster: PREDICTED: similar to MGC79829
protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to MGC79829 protein - Nasonia vitripennis
Length = 346
Score = 63.7 bits (148), Expect = 4e-09
Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 2/156 (1%)
Frame = +1
Query: 103 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIV 282
+ APMVR LP R L KY DI +T ++ F++S + + +T ++ D ++
Sbjct: 17 VCAPMVRYSKLPFRTLVRKYDCDICFTPMILADSFVQSSKARDSEFST----NEGDSPLI 72
Query: 283 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSK 462
+ +E V + ++V +D+N GCP+ +++K G G LL+K
Sbjct: 73 VQFAAKEVDDFV------------EATEMVAPYSNGVDLNCGCPQRWALKDGYGADLLTK 120
Query: 463 PDKAYQILKTLVDNLSIP--VTCKIRILKTPEATLE 564
P +++ + + + P V+ KIRILK + T+E
Sbjct: 121 PQLVKELVSNVRNRIPKPFTVSVKIRILKDIKKTIE 156
>UniRef50_Q64MI4 Cluster: Putative TIM-barrel enzyme; n=3;
Bacteroidales|Rep: Putative TIM-barrel enzyme -
Bacteroides fragilis
Length = 324
Score = 63.3 bits (147), Expect = 6e-09
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 1/150 (0%)
Frame = +1
Query: 91 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 270
E + LAPM + RL+ K+GAD+VYTE + +RS V++T
Sbjct: 10 ERPVFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSSDALIRS-------------VNKTT 56
Query: 271 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAI-DINMGCPKEFSIKGGMGV 447
+ C+EE+ V +Q+ D + A++VE I DIN GCP + G G
Sbjct: 57 QKLTI--CDEERP-VAIQIYGKDTEAMVGAARIVEEAQPDILDINFGCPVKKVAGKGAGA 113
Query: 448 ALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
+L K +I + +VD + IPVT K R+
Sbjct: 114 GMLQNIPKMLEITRAVVDAVKIPVTVKTRL 143
>UniRef50_A4TZK1 Cluster: Dihydrouridine synthase, DuS; n=4;
Proteobacteria|Rep: Dihydrouridine synthase, DuS -
Magnetospirillum gryphiswaldense
Length = 335
Score = 63.3 bits (147), Expect = 6e-09
Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Frame = +1
Query: 94 NKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDG 273
N +ILAPM + +P R L + GA +V +E + +R+ R+ + +
Sbjct: 18 NPVILAPMSGVTDMPCRRLVKRMGAGLVVSEMIASQAMIRANRQTMKMASN--------- 68
Query: 274 TIVFRTCEEEKKKVVLQLGTCDEARALKVAKL-VEHDVAAIDINMGCP-KEFSIKGGMGV 447
C EE V QL C+ + A++ + A IDINMGCP K+ ++KG G
Sbjct: 69 ------CAEEHPMSV-QLAGCEPEVMAEAARMNADRGAAIIDINMGCPVKKVAVKGEAGS 121
Query: 448 ALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
AL+ A Q+++ V + +PVT K R+
Sbjct: 122 ALMKDEILAGQLMEATVRAVDVPVTLKCRM 151
>UniRef50_A7S213 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 570
Score = 62.9 bits (146), Expect = 8e-09
Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 2/153 (1%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
+++ +K+ LAP+ IG LP R + +YGADI E + L+ +
Sbjct: 214 IDFSDKLYLAPLTTIGNLPFRRICKQYGADITCGEMAMCTNLLQGQ-------------- 259
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLV--EHDVAAIDINMGCPKEFSIKG 435
Q++ +V R E+ V L G + K A+L+ E DV IDIN GCP +
Sbjct: 260 QSEWALVKRHSSEDIFGVQL-CGAFPDTMT-KCAELLQKETDVDFIDINTGCPIDLVFNK 317
Query: 436 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIR 534
G G AL+ + K QI++ + + IP+T KIR
Sbjct: 318 GAGSALMERKGKLQQIVQGMKSVIDIPLTVKIR 350
>UniRef50_Q6MNE9 Cluster: Nitrogen regulation protein nifR3; n=1;
Bdellovibrio bacteriovorus|Rep: Nitrogen regulation
protein nifR3 - Bdellovibrio bacteriovorus
Length = 352
Score = 62.5 bits (145), Expect = 1e-08
Identities = 32/82 (39%), Positives = 51/82 (62%)
Frame = +1
Query: 325 LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDN 504
LG ++A A V +LVE AIDINMGCP + ++K GVAL+ P A ++++ V N
Sbjct: 82 LGNEEDAIAESVKRLVEWGAEAIDINMGCPVQKALKHNYGVALMGDPAYAAEVVRMTVKN 141
Query: 505 LSIPVTCKIRILKTPEATLELV 570
++PV+ K+R + + + EL+
Sbjct: 142 STVPVSVKLRAVGSTKEFDELL 163
>UniRef50_Q6P1R4 Cluster: tRNA-dihydrouridine synthase 1-like; n=20;
Euteleostomi|Rep: tRNA-dihydrouridine synthase 1-like -
Homo sapiens (Human)
Length = 473
Score = 62.1 bits (144), Expect = 1e-08
Identities = 44/159 (27%), Positives = 76/159 (47%)
Frame = +1
Query: 103 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIV 282
++APMV L RLL+ ++GA + YT L F+R +Y + +
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRD----------ANYRKE---NLY 66
Query: 283 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSK 462
C E+ + +++Q D ++ A L + AID+N+GCP+ + +G G L +
Sbjct: 67 CEVCPED-RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDE 125
Query: 463 PDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKL 579
D +++ + LS+PVTCKIR+ + T+ L
Sbjct: 126 WDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQML 164
>UniRef50_Q8KB61 Cluster: TIM-barrel protein, nifR3 family; n=10;
Chlorobiaceae|Rep: TIM-barrel protein, nifR3 family -
Chlorobium tepidum
Length = 352
Score = 61.3 bits (142), Expect = 2e-08
Identities = 45/152 (29%), Positives = 71/152 (46%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
++ + IILAPM + R L ++GADIVYTE F+ ++ + ++ +
Sbjct: 11 IDIDRPIILAPMEDVTDRAFRQLCKQHGADIVYTE------FISAEALRRGVEKSIRKIT 64
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGM 441
D E+ V G E+ A ++ +DIN GCP + G
Sbjct: 65 VAD---------HERPVAVQIFGNTVESMVEAAAIAETYEPDYLDINFGCPVKKVAGRGA 115
Query: 442 GVALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
G ALL +P+K +I +V+ +S+PVT K RI
Sbjct: 116 GAALLKEPEKLSEIASAVVNAVSLPVTAKTRI 147
>UniRef50_Q1Q3Q8 Cluster: Strongly similar to tRNA-dihydrouridine
synthase; n=1; Candidatus Kuenenia stuttgartiensis|Rep:
Strongly similar to tRNA-dihydrouridine synthase -
Candidatus Kuenenia stuttgartiensis
Length = 341
Score = 61.3 bits (142), Expect = 2e-08
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 1/154 (0%)
Frame = +1
Query: 79 NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 258
N+ ++ILAPM +P RL+ ++G + YTE +++ V
Sbjct: 28 NIPVYGELILAPMAGFSDMPYRLICRRFGMSMSYTE----------------VVSVSGIV 71
Query: 259 DQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKG 435
T +EE++ V Q+ DE + + K +E IDINMGC
Sbjct: 72 WNNKKTFKLLDFKEEERPVTFQVVGNDECQITEACKKIEQLGPDIIDINMGCSVSDIAGK 131
Query: 436 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
G G +L P K ++ L +LS+PVT KIR+
Sbjct: 132 GAGAGMLKHPSKISKMFNNLTGSLSVPVTGKIRL 165
>UniRef50_A6CBK4 Cluster: Predicted TIM-barrel enzyme, possibly
dehydrogenase, nifR3 family protein; n=1; Planctomyces
maris DSM 8797|Rep: Predicted TIM-barrel enzyme,
possibly dehydrogenase, nifR3 family protein -
Planctomyces maris DSM 8797
Length = 365
Score = 61.3 bits (142), Expect = 2e-08
Identities = 34/105 (32%), Positives = 64/105 (60%), Gaps = 3/105 (2%)
Frame = +1
Query: 232 DILNTVDYVDQTDGTI-VFRTCEEEKKKVVLQLGTCDEARALK-VAKLVE-HDVAAIDIN 402
D++N ++ ++ T+ + +TC E+ V G+ E + +K A+L+E V +IDIN
Sbjct: 59 DLVNARGLLEGSEKTLQLTQTCPEDSPFAVQIFGS--EPQQMKDAAQLLESRGVHSIDIN 116
Query: 403 MGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
MGCP +KGG G +++ +P +++T+V+ + IPV+ K+R+
Sbjct: 117 MGCPVNRIVKGGAGASMMCRPSDTVSLVQTVVEAVKIPVSVKMRL 161
>UniRef50_A2FJB5 Cluster: TIM-barrel protein, nifR3 family protein;
n=1; Trichomonas vaginalis G3|Rep: TIM-barrel protein,
nifR3 family protein - Trichomonas vaginalis G3
Length = 301
Score = 61.3 bits (142), Expect = 2e-08
Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Frame = +1
Query: 232 DILNTVDYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLV-EHDVAAIDINMG 408
++++ + V + TI ++KKV +Q+ D + A+++ ++D + +DINMG
Sbjct: 24 EMVSAMALVYENKKTIDLLDISPKEKKVAVQIFGSDPDVMGEAARILNDYDFSYVDINMG 83
Query: 409 CPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIR 534
CP +K G LLS P Y I+K++V N + PVT K+R
Sbjct: 84 CPAPKIVKNNSGSHLLSNPSLVYDIVKSVVKNSNKPVTAKVR 125
>UniRef50_A3LUK5 Cluster: Dihydrouridine synthase of tRNA; n=6;
Saccharomycetales|Rep: Dihydrouridine synthase of tRNA -
Pichia stipitis (Yeast)
Length = 613
Score = 61.3 bits (142), Expect = 2e-08
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 4/155 (2%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
+++ N I++P+ +G LP R L K GADI Y+E + L++ N +
Sbjct: 240 LDFRNAKIVSPLTTVGNLPYRRLMKKLGADITYSEMALSVPLLQAT-------NAEWALP 292
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHD---VAAIDINMGCPKEFSIK 432
+ T E +Q+ T A KVA+++ + V+ +++N GCP + +
Sbjct: 293 KAHRT--------EYPGYGVQIATSKHWAAAKVAEIISRETEHVSELNLNCGCPIDLLYR 344
Query: 433 GGMGVALLSKPDKAYQILKTL-VDNLSIPVTCKIR 534
G G ALL +P + +ILK + + IPVT KIR
Sbjct: 345 QGQGSALLEQPARLVRILKAMNASSGDIPVTVKIR 379
>UniRef50_Q08111 Cluster: Probable tRNA-dihydrouridine synthase;
n=21; Alphaproteobacteria|Rep: Probable
tRNA-dihydrouridine synthase - Rhodobacter capsulatus
(Rhodopseudomonas capsulata)
Length = 324
Score = 61.3 bits (142), Expect = 2e-08
Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 3/156 (1%)
Frame = +1
Query: 79 NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 258
++ + ++LAPM I LP R + ++GA +V +E + + L +K +V
Sbjct: 7 SLRLDPPVLLAPMAGITDLPFRRMVARFGAGLVVSEMVASGEMLTAKP-------SVRAK 59
Query: 259 DQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFSIK 432
Q + T T +QL + A + AK+V D+ A IDINMGCP + +
Sbjct: 60 AQAELTAGLPTS--------VQLAGREAAPMAEAAKIVA-DMGAEIIDINMGCPAK-KVT 109
Query: 433 GGM-GVALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
GG+ G AL+ PD A ++++ +V + +PVT K+R+
Sbjct: 110 GGLSGAALMRNPDHALRLIEAVVGAVDLPVTLKMRL 145
>UniRef50_Q74EF7 Cluster: Dihydrouridine synthase family protein;
n=2; Deltaproteobacteria|Rep: Dihydrouridine synthase
family protein - Geobacter sulfurreducens
Length = 325
Score = 60.9 bits (141), Expect = 3e-08
Identities = 49/147 (33%), Positives = 73/147 (49%)
Frame = +1
Query: 94 NKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDG 273
N +ILAPM I LP RLLA + GA + +TE + +R ++ ++L +V D+ G
Sbjct: 14 NNLILAPMAGITNLPFRLLAREQGAGLCFTEMVSVNGLVREGKKSFELLRSVPG-DRPLG 72
Query: 274 TIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVAL 453
+QL D +VA V+ IDINMGCP + + G G AL
Sbjct: 73 ---------------IQLFGDDPDVMGRVAATVDGYGDLIDINMGCPVKKVVGTGAGSAL 117
Query: 454 LSKPDKAYQILKTLVDNLSIPVTCKIR 534
+ +PDK I++ + +P+T KIR
Sbjct: 118 MREPDKVRAIVRAVRRATRLPLTVKIR 144
>UniRef50_Q0FAI7 Cluster: tRNA-dihydrouridine synthase, putative;
n=1; alpha proteobacterium HTCC2255|Rep:
tRNA-dihydrouridine synthase, putative - alpha
proteobacterium HTCC2255
Length = 324
Score = 60.9 bits (141), Expect = 3e-08
Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 1/147 (0%)
Frame = +1
Query: 100 IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTI 279
++L+P+ I LP R L +GA +V +E + + ++ + D + +GT
Sbjct: 11 VLLSPLAGITDLPYRNLVSSFGAGLVVSEMVASHEIMQKGK---DARARAELGFNVEGTS 67
Query: 280 VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAI-DINMGCPKEFSIKGGMGVALL 456
V Q+ D + AKL+E + A I DINMGCP + + G G AL+
Sbjct: 68 V-------------QIAGRDAFWMSECAKLIEGNGAKIIDINMGCPAKSVVNGASGSALM 114
Query: 457 SKPDKAYQILKTLVDNLSIPVTCKIRI 537
PD A ++++ +V+ + IPVT K R+
Sbjct: 115 RTPDLALKLIEAVVNAVDIPVTLKTRL 141
>UniRef50_Q5KP54 Cluster: TRNA dihydrouridine synthase, putative;
n=1; Filobasidiella neoformans|Rep: TRNA dihydrouridine
synthase, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 610
Score = 60.9 bits (141), Expect = 3e-08
Identities = 33/102 (32%), Positives = 53/102 (51%)
Frame = +1
Query: 256 VDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKG 435
+D+ G E + +++Q D L AK VEH A+DIN GCP+ + +G
Sbjct: 133 LDEEGGEGTIGGVEGGDRPLIVQFCANDPDILLAAAKKVEHRCDAVDINFGCPQGIAKRG 192
Query: 436 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATL 561
G L + + ++++ TL +NLS+PVT K RI + T+
Sbjct: 193 HYGSFLQDEWELIHKLISTLHENLSVPVTAKFRIFPDLDKTI 234
>UniRef50_Q06063 Cluster: tRNA-dihydrouridine synthase 4; n=10;
Saccharomycetales|Rep: tRNA-dihydrouridine synthase 4 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 367
Score = 60.9 bits (141), Expect = 3e-08
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 3/162 (1%)
Frame = +1
Query: 103 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKR-RFNDILNTVDYVDQTDGTI 279
I PMVR LP R L +Y DIVY+ ++ +++R++ R +D+
Sbjct: 42 IAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRNEHARISDL-------------- 87
Query: 280 VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLS 459
+ E +++Q+G + A LK ++V I IN GCP + I+ G+G AL+
Sbjct: 88 ---STNNEDTPLIVQVGVNNVADLLKFVEMVAPYCDGIGINCGCPIKEQIREGIGCALIY 144
Query: 460 KPDKAYQILKTLVDNL--SIPVTCKIRILKTPEATLELVNKL 579
D ++ + D + + KIRI + + T+EL KL
Sbjct: 145 NSDLLCSMVHAVKDKYGDKLRIETKIRIHEALDETVELCRKL 186
>UniRef50_Q0IFC6 Cluster: tRNA-dihydrouridine synthase; n=2;
Culicidae|Rep: tRNA-dihydrouridine synthase - Aedes
aegypti (Yellowfever mosquito)
Length = 391
Score = 60.5 bits (140), Expect = 4e-08
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 4/163 (2%)
Frame = +1
Query: 103 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRS-KRRFNDILNTVDYVDQTDGTI 279
I APMVR L R L YG D+ +T ++ F +S K R N+
Sbjct: 26 ICAPMVRYSKLEFRNLVRSYGTDLTFTSMIMADSFCQSEKARLNEF-------------- 71
Query: 280 VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLS 459
T + V+ Q + L ++ V +D+N GCP+ ++++ G G ALL
Sbjct: 72 ---TTNRDDTPVIAQFAAKNAVDFLSATEMTFPYVDGVDLNCGCPQRWAMQDGYGSALLR 128
Query: 460 KPDKAYQILKTLVDNL--SIPVTCKIRIL-KTPEATLELVNKL 579
P+ +L T+ NL + V+ K+R+L K+ AT+++ +L
Sbjct: 129 TPELIADMLSTVRRNLPSTFSVSVKVRLLQKSLSATIDMCRQL 171
>UniRef50_A7DPL5 Cluster: Putative TIM-barrel protein, nifR3 family;
n=1; Candidatus Nitrosopumilus maritimus SCM1|Rep:
Putative TIM-barrel protein, nifR3 family - Candidatus
Nitrosopumilus maritimus SCM1
Length = 320
Score = 60.5 bits (140), Expect = 4e-08
Identities = 44/149 (29%), Positives = 68/149 (45%)
Frame = +1
Query: 88 YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQT 267
+ ++ LAPM + +RL K GA +V TE + + + + + T+
Sbjct: 5 FSSRAFLAPMAGVSDPALRLQCKKMGAGLVVTEFTSIHSIIAKEEQLKENMKTIQE---- 60
Query: 268 DGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGV 447
F E+++ + +QL D K A +VE ID NMGCP + G
Sbjct: 61 -----FIEFSEQERPISVQLFGSDLYALEKAATIVEPYFDIIDYNMGCPAPHITQQMAGG 115
Query: 448 ALLSKPDKAYQILKTLVDNLSIPVTCKIR 534
ALL + + QI +TLV+ + PVT KIR
Sbjct: 116 ALLQEVNLTQQIFETLVNAVKKPVTLKIR 144
>UniRef50_O95620 Cluster: tRNA-dihydrouridine synthase 4-like; n=28;
Eumetazoa|Rep: tRNA-dihydrouridine synthase 4-like -
Homo sapiens (Human)
Length = 317
Score = 60.5 bits (140), Expect = 4e-08
Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 5/173 (2%)
Frame = +1
Query: 73 PINMNYENKII--LAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNT 246
PI M + +++ APMVR L R L KY D+ YT ++ F++S + + T
Sbjct: 18 PIEMFHSGQLVKVCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTT 77
Query: 247 VDYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFS 426
+Q D C +++Q D A++V IDIN GCP+ ++
Sbjct: 78 ----NQGD-------CP-----LIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWA 121
Query: 427 IKGGMGVALLSKPDKAYQILKTLVDNLSIP---VTCKIRILKTPEATLELVNK 576
+ G G L++KP+ ++K + + + P V+ KIRI + T++L K
Sbjct: 122 MAEGYGACLINKPELVQDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQK 174
>UniRef50_Q6F288 Cluster: TRNA dihydrouridine synthetase; n=3;
Mollicutes|Rep: TRNA dihydrouridine synthetase -
Mesoplasma florum (Acholeplasma florum)
Length = 325
Score = 60.1 bits (139), Expect = 5e-08
Identities = 46/171 (26%), Positives = 88/171 (51%), Gaps = 3/171 (1%)
Frame = +1
Query: 79 NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEEL-IDWKFLRSKRRFNDILNTVDY 255
N+ + K++ PM + P RL++ + GAD+V E + ++ +K+ F+ +
Sbjct: 5 NVEIKGKLVQGPMAGVSNPPFRLISKEKGADLVCAEMVSVEGMTHNNKKTFSMLA----- 59
Query: 256 VDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPK-EFSIK 432
V++ + + + + + ++ DE V+ D+ ID+N+GCP + +++
Sbjct: 60 VEKKEHPMSMQIFGNDVESFIVATKWIDEN--------VDCDI--IDLNIGCPAPKVAVR 109
Query: 433 GGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLEL-VNKLI 582
G +LL P+ Y I+K +V+N S PVT KIR+ E+ + V+KLI
Sbjct: 110 SASGSSLLKTPELIYDIVKAVVENTSKPVTAKIRLGWDKESVNAVEVSKLI 160
>UniRef50_Q1VN28 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=1; Psychroflexus torquis ATCC 700755|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3 -
Psychroflexus torquis ATCC 700755
Length = 338
Score = 59.7 bits (138), Expect = 7e-08
Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 3/175 (1%)
Frame = +1
Query: 64 LQFPINMNYEN-KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDIL 240
+ FP+ ++ + I LAPM + L RLLA + GAD TE R + N L
Sbjct: 1 MAFPVGVSLDPVPIFLAPMAGVTDLAYRLLAKECGADFTVTEFTAASGLTR--KNTNSWL 58
Query: 241 NTVDYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKE 420
+TD +K + Q+ D + K ++E IDIN GCP
Sbjct: 59 KV-----ETD---------PREKPFIPQIFGGDISEMAKTVGMLEDRSDVIDINFGCPAP 104
Query: 421 FSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI--LKTPEATLELVNKL 579
+ G ALL PDK +++ +++ ++P+T K+R+ P LE+ +L
Sbjct: 105 KVCRNDAGAALLRDPDKVVSMVRRCIESTNVPITVKMRLGTGSGPNTALEISKRL 159
>UniRef50_Q57V78 Cluster: TRNA-dihydrouridine synthase 1, putative;
n=1; Trypanosoma brucei|Rep: TRNA-dihydrouridine
synthase 1, putative - Trypanosoma brucei
Length = 520
Score = 59.7 bits (138), Expect = 7e-08
Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 10/169 (5%)
Frame = +1
Query: 103 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD----QTD 270
++ PMV LP RLL +YGA + YT F +S +T + ++
Sbjct: 76 VVGPMVDQSELPFRLLCRRYGATLAYTPMFHAKSFAQSAHYRQRYFSTTTFPPHSAMESG 135
Query: 271 GTIVFRTCE------EEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIK 432
G + + + Q D L A+ VE A+D N+GCP+ + +
Sbjct: 136 GNVAANDSTSNDGALDNDHPLFAQFCGNDPETVLAAARHVEDYCEAVDFNIGCPQGIARR 195
Query: 433 GGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKL 579
G G L+ + + IL L L +PVT K+RI TL+ L
Sbjct: 196 GHYGSFLMEDWELLHNILHALAVELRVPVTAKMRIFDDEALTLKYAEML 244
>UniRef50_Q2UL89 Cluster: Uncharacterized conserved protein; n=15;
Pezizomycotina|Rep: Uncharacterized conserved protein -
Aspergillus oryzae
Length = 730
Score = 59.3 bits (137), Expect = 9e-08
Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 12/178 (6%)
Frame = +1
Query: 103 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDIL--NTVDYVDQT--D 270
+LAP+ G LP R L ++ GA Y+E + ++ +R ++ + + + T
Sbjct: 322 VLAPLTTQGNLPFRRLCIELGAQFTYSEMALSMPLIQGQRGEWALMRAHETEMLPPTISP 381
Query: 271 GTIVFRTCEEEKK-KVVLQLGTCDEARALKVAKLVE---HDVAAIDINMGCPKEFSIKGG 438
G V + + K + Q+ +ALK +++ ++ ID+N GCP + + G
Sbjct: 382 GADVVQGYDHSKDFRFGAQIAANKHWQALKATEVLSAYTPNLRVIDLNCGCPIDLLFREG 441
Query: 439 MGVALLSKPDKAYQILKTL-VDNLSIPVTCKIRI---LKTPEATLELVNKLITYQFQS 600
G ALL P K +IL+ + + IP+T KIR+ +P A L+L +LI ++S
Sbjct: 442 AGSALLEHPSKLERILRGMNAVSQEIPITAKIRMGTRDNSPNA-LKLAERLILGGYES 498
>UniRef50_Q9XVN8 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 527
Score = 58.8 bits (136), Expect = 1e-07
Identities = 43/160 (26%), Positives = 73/160 (45%)
Frame = +1
Query: 103 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIV 282
+LAPMV L R+ KYGA + +T + F+ + L V + D +V
Sbjct: 76 VLAPMVDQSELAFRMFTRKYGAQLTFTPMIHAHLFVNDGTYRRNSLALV----KADRPLV 131
Query: 283 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSK 462
+ C KV L C +LVE +D+N+GCP+ + +G G L +
Sbjct: 132 VQFC---ANKVDTFLAAC---------RLVEDVCDGVDLNLGCPQMVAKRGRYGSWLQDE 179
Query: 463 PDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLI 582
D +++ + D +P++CKIR+ + T+E +L+
Sbjct: 180 VDLICEMVSAVRDYCRLPISCKIRVRDDRQQTVEYAKRLV 219
>UniRef50_A6LGT0 Cluster: Putative TIM-barrel enzyme; n=1;
Parabacteroides distasonis ATCC 8503|Rep: Putative
TIM-barrel enzyme - Parabacteroides distasonis (strain
ATCC 8503 / DSM 20701 / NCTC11152)
Length = 329
Score = 58.4 bits (135), Expect = 2e-07
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 1/150 (0%)
Frame = +1
Query: 91 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 270
E + LAPM + + RL+ ++GAD+VYTE + +RS + LN D
Sbjct: 10 ERPVFLAPMEDVTDISFRLMCKRFGADMVYTEFVSSDALIRSVNKTQQKLNVSD------ 63
Query: 271 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAI-DINMGCPKEFSIKGGMGV 447
+++ V +Q+ D A ++ A++ E I DIN GCP + G G
Sbjct: 64 ----------DERPVAIQIYGKDVASMVEAARICEEARPDILDINFGCPVKKVAGKGAGA 113
Query: 448 ALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
+L +I + +V ++IPVT K R+
Sbjct: 114 GMLRNIPLMLEITREVVKAVNIPVTVKTRL 143
>UniRef50_Q251N6 Cluster: Putative uncharacterized protein; n=2;
Desulfitobacterium hafniense|Rep: Putative
uncharacterized protein - Desulfitobacterium hafniense
(strain Y51)
Length = 326
Score = 58.0 bits (134), Expect = 2e-07
Identities = 33/85 (38%), Positives = 44/85 (51%)
Frame = +1
Query: 298 EEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAY 477
E ++V G+ E A A VE D IDINMGCP +K G G ALL A
Sbjct: 68 EASPRIVQLFGSEPEVMAKAAALAVERDAEIIDINMGCPTPKIVKNGEGSALLQDLPLAQ 127
Query: 478 QILKTLVDNLSIPVTCKIRILKTPE 552
+I + +V + +PVT K+R+ T E
Sbjct: 128 RIAEAVVKAVEVPVTVKMRLGWTAE 152
>UniRef50_Q9TYN2 Cluster: Putative uncharacterized protein
Y37E11B.5; n=2; Caenorhabditis|Rep: Putative
uncharacterized protein Y37E11B.5 - Caenorhabditis
elegans
Length = 554
Score = 58.0 bits (134), Expect = 2e-07
Identities = 53/169 (31%), Positives = 72/169 (42%), Gaps = 9/169 (5%)
Frame = +1
Query: 73 PINM-NYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTV 249
P+NM + + K LAP+ +G LP R + + YGADI E + L +L
Sbjct: 196 PLNMGSLDGKKYLAPLTTVGNLPFRRICVDYGADITCGEMALATSILSGTASEYSLLKR- 254
Query: 250 DYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSI 429
CE+ V L G D + DV IDINMGCP +
Sbjct: 255 ------------HPCEKIFG-VQLAGGFADTMAKASQIVVENFDVDFIDINMGCPIDVVN 301
Query: 430 KGGMGVALLSKPDKAYQILKTLVDNLS--IPVTCKIR------ILKTPE 552
+ G G AL S+P K +++L L P+T KIR +LK PE
Sbjct: 302 QKGGGCALPSRPQKLFEVLAATKSVLGGCCPLTVKIRTGMKEGVLKAPE 350
>UniRef50_Q4UGK9 Cluster: Putative uncharacterized protein; n=2;
Theileria|Rep: Putative uncharacterized protein -
Theileria annulata
Length = 359
Score = 58.0 bits (134), Expect = 2e-07
Identities = 39/123 (31%), Positives = 59/123 (47%)
Frame = +1
Query: 97 KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 276
K I+APMV LP RLL +Y AD+ YT ++ K + +I
Sbjct: 27 KFIVAPMVDQSELPFRLLCRRYSADLAYTP-MLHAKIFSENENYRNIH------------ 73
Query: 277 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 456
F T ++K + G D + + + +++DV+AIDIN+GCP+ + KG G LL
Sbjct: 74 --FHTSSDDKPLIAQFCGN-DPSAFILASSYIKNDVSAIDINLGCPQGIAKKGRYGSFLL 130
Query: 457 SKP 465
P
Sbjct: 131 EYP 133
>UniRef50_UPI000023EA9A Cluster: hypothetical protein FG07217.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG07217.1 - Gibberella zeae PH-1
Length = 510
Score = 57.6 bits (133), Expect = 3e-07
Identities = 31/92 (33%), Positives = 46/92 (50%)
Frame = +1
Query: 307 KKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQIL 486
+ + +Q D L AK V A+D+N+GCP+ + KG G L D ++++
Sbjct: 102 RPLFVQFCANDPDALLSAAKQVAPYCDAVDLNLGCPQGIARKGKYGAFLQEDQDLIFRLI 161
Query: 487 KTLVDNLSIPVTCKIRILKTPEATLELVNKLI 582
L L +PVT KIRIL T E TL ++
Sbjct: 162 NILHKELPVPVTAKIRILDTKEETLAYAQNVL 193
>UniRef50_Q6PEH0 Cluster: Zgc:63779; n=8; Chordata|Rep: Zgc:63779 -
Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 660
Score = 57.2 bits (132), Expect = 4e-07
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
+++ +K+ LAP+ G LP R + ++GADI E + L+ +
Sbjct: 311 VDFRDKLYLAPLTTCGNLPFRRVCKRFGADITCGEMAMCTNLLQGQA------------- 357
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEH--DVAAIDINMGCPKEFSIKG 435
++ ++ R E+ V QL C + A+L+ DV +DIN GCP + K
Sbjct: 358 -SEWALLKRHASEDLFGV--QLEGCFPDTMTRCAELLNQNIDVDFVDINSGCPIDLVYKK 414
Query: 436 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIR 534
G G L+++ K QI++ + L +P+T KIR
Sbjct: 415 GGGCGLMTRTSKFEQIVRGMNSVLDVPLTVKIR 447
>UniRef50_Q5LRN6 Cluster: TRNA-dihydrouridine synthase, putative;
n=10; Rhodobacterales|Rep: TRNA-dihydrouridine synthase,
putative - Silicibacter pomeroyi
Length = 327
Score = 57.2 bits (132), Expect = 4e-07
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 1/147 (0%)
Frame = +1
Query: 100 IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTI 279
+ILAPM I P R L +++GA +V +E + + +++K + V+ T
Sbjct: 14 VILAPMAGITDRPFRDLVMEFGAGMVVSEMVASQEMVQAKPGVRERAELSADVENT---- 69
Query: 280 VFRTCEEEKKKVVLQLGTCDEARALKVAKLV-EHDVAAIDINMGCPKEFSIKGGMGVALL 456
+QL D + A+ V + IDINMGCP + G G ALL
Sbjct: 70 ------------AVQLAGRDTHWIAEAARQVADRGARVIDINMGCPAKKVTNGYSGSALL 117
Query: 457 SKPDKAYQILKTLVDNLSIPVTCKIRI 537
PD A ++++ +V + +PVT K R+
Sbjct: 118 KTPDHALRLIEAVVAAVDVPVTLKTRL 144
>UniRef50_Q4WRF0 Cluster: Dihydrouridine synthase family protein,
putative; n=9; Pezizomycotina|Rep: Dihydrouridine
synthase family protein, putative - Aspergillus
fumigatus (Sartorya fumigata)
Length = 541
Score = 57.2 bits (132), Expect = 4e-07
Identities = 32/110 (29%), Positives = 55/110 (50%)
Frame = +1
Query: 256 VDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKG 435
+D+ D ++ + +++Q D L+ A+ V A+D+N+GCP+ + KG
Sbjct: 108 LDKNDNSLYLDGNPAFDRPLIVQFCANDPDDFLEAARHVAPYCDAVDLNLGCPQGIARKG 167
Query: 436 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLIT 585
G L D Y+++ L L IPVT K RI ++ E TLE +++
Sbjct: 168 HYGAFLQEDWDLIYKLINRLHKELPIPVTAKFRIQESKEKTLEYAKMILS 217
>UniRef50_A0LJ96 Cluster: Putative TIM-barrel protein, nifR3 family;
n=1; Syntrophobacter fumaroxidans MPOB|Rep: Putative
TIM-barrel protein, nifR3 family - Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB)
Length = 352
Score = 56.4 bits (130), Expect = 7e-07
Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 1/147 (0%)
Frame = +1
Query: 100 IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTI 279
++LAPM + R L +GA +V TE + +R++R T+D Q
Sbjct: 24 LVLAPMAGVTDSAYRALMADFGAAMVTTEMVSIQGLVRNQRA------TLDLCRQQHPVG 77
Query: 280 VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA-IDINMGCPKEFSIKGGMGVALL 456
V + +Q+ D A + A+LVE AA IDIN GCP ++ G G LL
Sbjct: 78 V---------PLAVQVFGRDPAVMAEAARLVEQGGAALIDINAGCPVRKVVRQGAGAILL 128
Query: 457 SKPDKAYQILKTLVDNLSIPVTCKIRI 537
PD+ +++ + +S+PVT KIR+
Sbjct: 129 KDPDRLAAMVEAVKRAVSVPVTVKIRV 155
>UniRef50_A4S3Q5 Cluster: Predicted protein; n=2; Eukaryota|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 361
Score = 56.4 bits (130), Expect = 7e-07
Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 2/154 (1%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
++++ K+ +AP+ +G LP R + GADI +E + L+ R+ +L
Sbjct: 4 LDFKGKLYVAPLTTVGNLPFRRVCTDLGADITVSEMAMASNLLKGDRKEWALL------- 56
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFSIKG 435
R EK + G + A + A+L++++V+ ID+NMGCP +
Sbjct: 57 --------RRHPSEKCYGIQVCGGYPDLMA-RCAELIDNEVSCDFIDVNMGCPIDGVCAK 107
Query: 436 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
G G +L+ D+ +++T+ S PVT K+R+
Sbjct: 108 GAGSSLMRDTDRLKNVVRTMAAVSSTPVTIKLRM 141
>UniRef50_Q4PIC3 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 364
Score = 56.4 bits (130), Expect = 7e-07
Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 5/158 (3%)
Frame = +1
Query: 109 APMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDY-VDQTDGTIVF 285
APMV L RL ++ GA + +T+ + + + +L +++ + T +
Sbjct: 17 APMVGQSDLAFRLQTVQNGATLTWTQMYLAPELSSDQYMLESLLKSLEMGSNATKNMARY 76
Query: 286 RTC--EEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLS 459
R ++ V+QL + + ++ A+ V AID+N+GCP+ + +G G LL
Sbjct: 77 RASPLHDQSAPQVVQLAGNNVQQLVEAARRVAPYADAIDLNLGCPQRHAEQGHYGACLLP 136
Query: 460 KPD--KAYQILKTLVDNLSIPVTCKIRILKTPEATLEL 567
K + +I+ +V + +P+T KIR+ E T +L
Sbjct: 137 KQNWPLVAEIVSGMVQAVDVPITTKIRLPVPKEQTAQL 174
>UniRef50_Q5FTP7 Cluster: Nitrogen assimilation regulatory protein
NifR3; n=3; Acetobacteraceae|Rep: Nitrogen assimilation
regulatory protein NifR3 - Gluconobacter oxydans
(Gluconobacter suboxydans)
Length = 371
Score = 56.0 bits (129), Expect = 9e-07
Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 2/151 (1%)
Frame = +1
Query: 91 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 270
E+ +ILAP+ + LP R LA GA +V +E + W +R NT+
Sbjct: 34 EDPVILAPLSGVTDLPFRQLARDLGAGLVVSEMIASWAMIRENE------NTMRMARMA- 86
Query: 271 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKL-VEHDVAAIDINMGCP-KEFSIKGGMG 444
E+ +QL CD + AK+ V+ IDIN GCP K+ +I G
Sbjct: 87 ----------ERGPNAVQLAGCDPKAMAQAAKISVDGGANLIDINFGCPVKKVAIGQMAG 136
Query: 445 VALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
AL+ A ++L+ +++PVT K+R+
Sbjct: 137 SALMRDEVLAGKLLEATARAVNVPVTLKMRM 167
>UniRef50_A6VYA3 Cluster: TIM-barrel protein, yjbN family; n=8;
Proteobacteria|Rep: TIM-barrel protein, yjbN family -
Marinomonas sp. MWYL1
Length = 341
Score = 56.0 bits (129), Expect = 9e-07
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +1
Query: 283 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKGGMGVALLS 459
F +E + + LQLG D K AK+ E +++N+GCP + +G L++
Sbjct: 65 FLRYDECEHPIALQLGGSDAVALGKCAKMAEQAGFDEVNLNVGCPSDRVQNSLIGACLMA 124
Query: 460 KPDKAYQILKTLVDNLSIPVTCKIRI 537
PDK + ++ + DN SIPVT K RI
Sbjct: 125 HPDKVKEAMRAMQDNCSIPVTIKHRI 150
>UniRef50_Q9ZED2 Cluster: Probable tRNA-dihydrouridine synthase;
n=39; Proteobacteria|Rep: Probable tRNA-dihydrouridine
synthase - Rickettsia prowazekii
Length = 327
Score = 56.0 bits (129), Expect = 9e-07
Identities = 43/153 (28%), Positives = 70/153 (45%)
Frame = +1
Query: 79 NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 258
N+ + +ILAPM + L R L ++GA +V E+I + + K R + + +
Sbjct: 6 NIELSSNVILAPMSDVTDLEFRKLVKRFGAGLV-VSEMIASRAMIMKSRQSMQKCAIMHD 64
Query: 259 DQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGG 438
D T + CE + V+ + +E K+ ID+N GCP + + G
Sbjct: 65 DPTSACVQLAGCEPD---VIAEAAKMNEDMGAKI----------IDLNFGCPAKKVVGGY 111
Query: 439 MGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
G AL+ A +I + V + IPVT K+RI
Sbjct: 112 AGSALMRDEQLAAKIFEATVKAVKIPVTVKMRI 144
>UniRef50_Q0B0N8 Cluster: Putative TIM-barrel protein, NifR3 family;
n=2; Clostridiales|Rep: Putative TIM-barrel protein,
NifR3 family - Syntrophomonas wolfei subsp. wolfei
(strain Goettingen)
Length = 318
Score = 55.6 bits (128), Expect = 1e-06
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 1/149 (0%)
Frame = +1
Query: 91 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 270
EN++ APM + R+LA +G +V +E + D + + R + I ++
Sbjct: 10 ENRVCAAPMAGVSDKAYRVLARDFGCGLVCSEMVSDKGLVYGQGRTSKIADS-------- 61
Query: 271 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVA-AIDINMGCPKEFSIKGGMGV 447
EK+ V +Q+ + A++VE A IDINMGCP +K G G
Sbjct: 62 --------SGEKRPVAVQIFGSEAESMATAARIVEEMGADIIDINMGCPTPKIVKNGEGA 113
Query: 448 ALLSKPDKAYQILKTLVDNLSIPVTCKIR 534
AL+ K+ I++ ++ + +PVT K+R
Sbjct: 114 ALMLDITKSRGIVREVLRVVKVPVTVKMR 142
>UniRef50_A4M5I1 Cluster: Dihydrouridine synthase, DuS; n=1;
Petrotoga mobilis SJ95|Rep: Dihydrouridine synthase, DuS
- Petrotoga mobilis SJ95
Length = 301
Score = 55.6 bits (128), Expect = 1e-06
Identities = 39/149 (26%), Positives = 67/149 (44%)
Frame = +1
Query: 91 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 270
EN+I LAPM P R + ++GA +TE + +R + +L
Sbjct: 3 ENQIGLAPMADYTDYPFREICRRFGAKFTFTEMISVDSIIRENEKVEKMLP--------- 53
Query: 271 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVA 450
++ + + +QL + + ++ AK ++H + IDIN CP +K G G A
Sbjct: 54 --------QKGEDNIGVQLFGNETTKFIEAAKSIQHLASWIDINAACPVNKVVKKGSGAA 105
Query: 451 LLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
LL P I+ L ++ +PV K+R+
Sbjct: 106 LLKNPKLLGDIVFNLKKSIDLPVGVKVRL 134
>UniRef50_Q7UBC5 Cluster: tRNA-dihydrouridine synthase A; n=231;
Bacteria|Rep: tRNA-dihydrouridine synthase A - Shigella
flexneri
Length = 330
Score = 55.6 bits (128), Expect = 1e-06
Identities = 43/125 (34%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Frame = +1
Query: 190 LIDWKFLRSKRRFNDIL--NTVDYVDQ-TDGTIV-----FRTCEEEKKKVVLQLGTCDEA 345
++DW R R F +L NT+ Y + T G I+ + EE+ V LQLG D A
Sbjct: 18 MLDWTD-RHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPA 76
Query: 346 RALKVAKLVE-HDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVT 522
+ AKL E I++N+GCP + G G L+ +K + D +SIPVT
Sbjct: 77 ALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVT 136
Query: 523 CKIRI 537
K RI
Sbjct: 137 VKTRI 141
>UniRef50_A2ACC0 Cluster: Novel protein; n=17; Eumetazoa|Rep: Novel
protein - Mus musculus (Mouse)
Length = 194
Score = 55.2 bits (127), Expect = 2e-06
Identities = 45/159 (28%), Positives = 72/159 (45%)
Frame = +1
Query: 103 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIV 282
++APMV L RLL+ ++GA + YT L F+R + L Y D
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENL----YCD------- 68
Query: 283 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSK 462
C E++ +V + A L + AID+N+GCP+ + +G G L +
Sbjct: 69 --VCPEDRPLIV------------QAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEE 114
Query: 463 PDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKL 579
D +++ + LS+PVTCKIR+ + T+ L
Sbjct: 115 WDLLQRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQML 153
>UniRef50_A6DPY9 Cluster: Putative uncharacterized protein; n=1;
Lentisphaera araneosa HTCC2155|Rep: Putative
uncharacterized protein - Lentisphaera araneosa HTCC2155
Length = 330
Score = 55.2 bits (127), Expect = 2e-06
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Frame = +1
Query: 325 LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDN 504
+G E A +V+ A+D+NMGCP + ++KGG+G A+L P YQ+L ++ +
Sbjct: 69 MGNNAELMAESAKLVVDCGADAVDVNMGCPTKRAVKGGVGSAMLKDPKLCYQVLASMREQ 128
Query: 505 LSIPVTCKIRI-LKTPEATLELVNKLI 582
+ ++ KIR E E++ ++
Sbjct: 129 VPCALSAKIRAGFDNKEGVFEILQAIV 155
>UniRef50_UPI0000DAE45A Cluster: hypothetical protein
Rgryl_01000346; n=1; Rickettsiella grylli|Rep:
hypothetical protein Rgryl_01000346 - Rickettsiella
grylli
Length = 330
Score = 54.8 bits (126), Expect = 2e-06
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +1
Query: 289 TCEEEKKKVVLQLGTCDEARALKVAKLVE-HDVAAIDINMGCPKEFSIKGGMGVALLSKP 465
T + +K + +QLG + K AK+VE + + I++N+GCP E GG GV LL +P
Sbjct: 59 TVDANEKALAIQLGGGIASDLSKAAKIVESYGYSEINLNVGCPSEKVQSGGFGVVLLKEP 118
Query: 466 DKAYQILKTLVDNLSIPVTCKIRI 537
++ + + + +PVT K RI
Sbjct: 119 NRVADAIAAMKAVVRLPVTVKTRI 142
>UniRef50_Q5M689 Cluster: Possible transcriptional regulator; n=20;
Streptococcus|Rep: Possible transcriptional regulator -
Streptococcus thermophilus (strain ATCC BAA-250 / LMG
18311)
Length = 350
Score = 54.8 bits (126), Expect = 2e-06
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 2/154 (1%)
Frame = +1
Query: 79 NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 258
N+ ++ +LAPM + R +A ++ A +V E + + L + + +L+
Sbjct: 37 NVEIPHRTVLAPMAGVTNSAFRTIAKEFSAGLVVMEMISEKGLLYNNEKTLHMLHI---- 92
Query: 259 DQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFSIK 432
+E + + +QL D + A ++ + A +DINMGCP +K
Sbjct: 93 ------------DENEHPMSIQLFGGDAEGLKRAADFIQTNTKADIVDINMGCPVNKVVK 140
Query: 433 GGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIR 534
G L PDK Y I+K + L IP+T K+R
Sbjct: 141 NEAGAKWLKDPDKIYHIVKEVTSVLDIPLTVKMR 174
>UniRef50_Q8GQD1 Cluster: NifR; n=5; Leptospira|Rep: NifR -
Leptospira interrogans
Length = 329
Score = 54.8 bits (126), Expect = 2e-06
Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 4/157 (2%)
Frame = +1
Query: 79 NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 258
N+ KI L+PM I P R + K+GA YTE +NT + V
Sbjct: 6 NVTIPGKISLSPMAGISDSPTRRICRKFGAAFSYTE----------------FVNTDELV 49
Query: 259 DQTDGTIVFRTCEEEKKKVVLQL-GTCDE--ARALKVAKLVEHDVAAIDINMGCP-KEFS 426
+ + + E++ + Q+ G E A A ++ + ++ D+ ID+NMGC ++ S
Sbjct: 50 HRAPKALKMFRYKLEERPITFQIFGNRLEIIAEAAEIIQELKPDI--IDLNMGCSTRKVS 107
Query: 427 IKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
++G G LL +P A +I++ + ++IPVT KIRI
Sbjct: 108 LRGA-GAGLLRRPLLAGKIIEAIKKRVNIPVTAKIRI 143
>UniRef50_A6BZR9 Cluster: Predicted TIM-barrel enzyme, possibly
dehydrogenase, nifR3 family protein; n=1; Planctomyces
maris DSM 8797|Rep: Predicted TIM-barrel enzyme,
possibly dehydrogenase, nifR3 family protein -
Planctomyces maris DSM 8797
Length = 355
Score = 54.8 bits (126), Expect = 2e-06
Identities = 25/57 (43%), Positives = 36/57 (63%)
Frame = +1
Query: 367 LVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
L +H AA+D+NMGCP G G ++ PD A Q++ +VD +SIPVT K+R+
Sbjct: 100 LEQHGYAAVDLNMGCPMAKINGNGGGARIMCAPDAACQLVAEVVDAVSIPVTVKMRL 156
>UniRef50_A4S141 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 307
Score = 54.8 bits (126), Expect = 2e-06
Identities = 40/153 (26%), Positives = 69/153 (45%)
Frame = +1
Query: 106 LAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVF 285
+APMV L R L +YGA + YT + F+ S + +I +T D ++
Sbjct: 20 VAPMVDQSELAFRELCKRYGATLGYTPMIHARLFVESPKYRREIFST----STRDRPLLA 75
Query: 286 RTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKP 465
+ C + + + L+ A ++ +DIN GCP+ + +G G L+
Sbjct: 76 QFCANDPEIL------------LRAATMIAPYCDGVDINFGCPQRIAKRGNYGAFLMDDW 123
Query: 466 DKAYQILKTLVDNLSIPVTCKIRILKTPEATLE 564
+++ L + L +PVT KIR+ E TL+
Sbjct: 124 KTVEALIRKLDEELPVPVTAKIRVYDDLETTLK 156
>UniRef50_Q6SFW7 Cluster: NifR3/Smm1 family protein; n=1; uncultured
bacterium 578|Rep: NifR3/Smm1 family protein -
uncultured bacterium 578
Length = 322
Score = 54.4 bits (125), Expect = 3e-06
Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 1/148 (0%)
Frame = +1
Query: 94 NKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDG 273
+K++LAPM P R++ + GA + +E ++ K L LNT +++
Sbjct: 10 SKVLLAPMAGTSDKPFRMICREQGAALTTSEMVVMQKHL---------LNT----NKSKH 56
Query: 274 TIVFRTCEEEKKKVVLQLGTCDEARALKVAK-LVEHDVAAIDINMGCPKEFSIKGGMGVA 450
+ FR+ E+ + +Q+ + + AK +E IDINMGCP + G A
Sbjct: 57 RLDFRS---EQSPISIQIAGSESQELAESAKQALEFGADIIDINMGCPAKKVCNKAAGSA 113
Query: 451 LLSKPDKAYQILKTLVDNLSIPVTCKIR 534
L+ I+K +V+ ++IPVT K+R
Sbjct: 114 LMKNEKLVEDIIKAVVNAVNIPVTLKMR 141
>UniRef50_Q2RZL4 Cluster: NifR3 family enzyme; n=1; Salinibacter
ruber DSM 13855|Rep: NifR3 family enzyme - Salinibacter
ruber (strain DSM 13855)
Length = 443
Score = 54.0 bits (124), Expect = 4e-06
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 1/150 (0%)
Frame = +1
Query: 91 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 270
+ + LAPM + P R+L +YGAD++YTE + LR + + L D
Sbjct: 74 DRPLFLAPMEDVSDPPFRILCKRYGADMMYTEFVSSAGLLREQEHEHQKLEIFD------ 127
Query: 271 GTIVFRTCEEEKKKVVLQLGTCDEAR-ALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGV 447
EE + + G DE R A + DV IDIN GCP ++ G
Sbjct: 128 --------EERPIGIQVWGGGIDEVRNATPMVDAAGPDV--IDINFGCPVRKIVQKDGGA 177
Query: 448 ALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
+L DK I +++ + PVT K R+
Sbjct: 178 GVLRNLDKMRNITAAVMEEATRPVTVKTRL 207
>UniRef50_Q010A0 Cluster: tRNA-dihydrouridine synthase; n=1;
Ostreococcus tauri|Rep: tRNA-dihydrouridine synthase -
Ostreococcus tauri
Length = 639
Score = 54.0 bits (124), Expect = 4e-06
Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 2/156 (1%)
Frame = +1
Query: 76 INMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDY 255
+++ ++ KI +AP+ +G LP R + GADI +E + L+ R+
Sbjct: 263 VSLEFKGKIYVAPLTTVGNLPFRRICTDLGADITVSEMAMASNLLKGDRK---------- 312
Query: 256 VDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFSI 429
+ +V R E+ + + G D + A+L++++V ID+NMGCP +
Sbjct: 313 ----EWALVRRHPIEKCFGIQICGGYPD--LMTRCAELLDNEVHCDFIDVNMGCPIDGVC 366
Query: 430 KGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
G G +L+ D+ ++++++ S PVT K+R+
Sbjct: 367 AKGAGGSLMRDTDRLKRVVRSMTSVSSTPVTIKLRM 402
>UniRef50_O52532 Cluster: tRNA-dihydrouridine synthase B; n=6;
Gammaproteobacteria|Rep: tRNA-dihydrouridine synthase B
- Serratia marcescens
Length = 334
Score = 54.0 bits (124), Expect = 4e-06
Identities = 48/154 (31%), Positives = 68/154 (44%), Gaps = 1/154 (0%)
Frame = +1
Query: 94 NKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDG 273
N +I APM I P R L GA + +E +L++ V +TD
Sbjct: 10 NCLIAAPMAGITDRPFRTLCHAMGAGMAVSE----------------MLSSNPEVWRTDK 53
Query: 274 TIVFRTCEEEKKKVVLQLGTCDEARALKVAKL-VEHDVAAIDINMGCPKEFSIKGGMGVA 450
+ + +E +Q+ CD A++ V IDINMGCP + + G A
Sbjct: 54 SRLRMVHSDEPGIRSVQIAGCDPDDMAAAARINVASGAQLIDINMGCPAKKVNRKLAGSA 113
Query: 451 LLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPE 552
LL PD +IL +VD + +PVT KIR PE
Sbjct: 114 LLQYPDLVKRILHAVVDAVDVPVTLKIRTGWAPE 147
>UniRef50_Q2RTR9 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=1; Rhodospirillum rubrum ATCC 11170|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3 -
Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)
Length = 362
Score = 53.6 bits (123), Expect = 5e-06
Identities = 47/147 (31%), Positives = 68/147 (46%), Gaps = 1/147 (0%)
Frame = +1
Query: 100 IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTI 279
I+LAPM + P R LA YG + +TE + + LR + R D G
Sbjct: 14 IMLAPMAGVTDSPFRRLAHDYGCPLSWTEMVASRELLRERARGVD-------PRLGGGAE 66
Query: 280 VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA-IDINMGCPKEFSIKGGMGVALL 456
R +QL CD + A+ VE A IDINMGCP + G G AL+
Sbjct: 67 AGRA-----GPFAVQLAGCDPLIMAEAARRVEGAGAELIDINMGCPVRKVVGGLGGSALM 121
Query: 457 SKPDKAYQILKTLVDNLSIPVTCKIRI 537
A +IL+ +V +++PV+ K+R+
Sbjct: 122 RDLPLAARILEAVVGAVTLPVSLKMRL 148
>UniRef50_Q582L4 Cluster: TRNA-dihydrouridine synthase 3, putative;
n=3; Trypanosoma|Rep: TRNA-dihydrouridine synthase 3,
putative - Trypanosoma brucei
Length = 528
Score = 53.6 bits (123), Expect = 5e-06
Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 4/172 (2%)
Frame = +1
Query: 88 YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQT 267
+ NK++LAP+ +G LP R + +YGADI E I++ ++ + ++
Sbjct: 164 FSNKLVLAPLTTVGNLPFRRVCKEYGADITVGEMA--------------IVHNLNRLQKS 209
Query: 268 DGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA---IDINMGCPKEFSIKGG 438
+ +++ R E+ LQ+ A+ A+ VE + +DIN GCP + + G
Sbjct: 210 EWSLLRRHSSED--IFGLQIAVSRPHDAITWAQAVEESGFSYDFVDINCGCPVDKVVLSG 267
Query: 439 MGVALLS-KPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLITYQ 591
G L K ++ ++++LV + S PVT K R + E EL + Y+
Sbjct: 268 CGCGLWERKGNRLRDVVQSLVAHQSKPVTIKCR-MGPDEENPELHKHIADYE 318
>UniRef50_Q1NXZ7 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3 precursor; n=2; delta proteobacterium MLMS-1|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3
precursor - delta proteobacterium MLMS-1
Length = 313
Score = 53.2 bits (122), Expect = 6e-06
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 2/147 (1%)
Frame = +1
Query: 100 IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTI 279
++ AP+ LP RLL +YGA + Y+E +L+ V + TI
Sbjct: 15 LVAAPLAGYSDLPFRLLCREYGAGLCYSE----------------MLSCHGLVRRQPATI 58
Query: 280 VFRTCEEEKKKVVLQL-GTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 456
++ +++QL G E A L + IDINMGCP +K G G AL+
Sbjct: 59 EMLATTAAERPLLMQLFGAEPEVMGEAAAILSRLPIDGIDINMGCPVRKVVKKGAGAALM 118
Query: 457 SKPDKAYQILKTLVDNL-SIPVTCKIR 534
P+ A I + +PVT KIR
Sbjct: 119 RDPELAAAITGAVTAAAGDLPVTVKIR 145
>UniRef50_A4XH30 Cluster: Putative TIM-barrel protein, nifR3 family;
n=1; Caldicellulosiruptor saccharolyticus DSM 8903|Rep:
Putative TIM-barrel protein, nifR3 family -
Caldicellulosiruptor saccharolyticus (strain ATCC 43494
/ DSM 8903)
Length = 328
Score = 53.2 bits (122), Expect = 6e-06
Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 2/153 (1%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
+N + K+ LAPM R L ++GAD+ TE + ++ ++++
Sbjct: 2 LNIKGKLFLAPMAGFTDKVFRSLCSRFGADVTVTEMVSAKAITMGSQKTKELISF----- 56
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLV--EHDVAAIDINMGCPKEFSIKG 435
E+EK K V G+ A + K++ E + IDINMGCP +K
Sbjct: 57 ----------SEDEKIKGVQIFGSDPHVMA-EAVKIIQDEFEYDFIDINMGCPVPKVVKS 105
Query: 436 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIR 534
G G AL+ P A +I++ + PV+ KIR
Sbjct: 106 GEGSALMKNPSLAAKIVEEVAKVSRKPVSVKIR 138
>UniRef50_Q96G46 Cluster: tRNA-dihydrouridine synthase 3-like; n=12;
Eutheria|Rep: tRNA-dihydrouridine synthase 3-like - Homo
sapiens (Human)
Length = 650
Score = 53.2 bits (122), Expect = 6e-06
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 2/153 (1%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
++ K+ LAP+ G LP R + ++GAD+ E + L+ + +L
Sbjct: 301 LDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKR----- 355
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFSIKG 435
CE+ +QL K A+L+ V +DIN+GCP + K
Sbjct: 356 --------HQCEDI---FGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKK 404
Query: 436 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIR 534
G G AL+++ K QI++ + L +P+T KIR
Sbjct: 405 GGGCALMNRSTKFQQIVRGMNQVLDVPLTVKIR 437
>UniRef50_UPI00015B6197 Cluster: PREDICTED: similar to CG10463-PA;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
CG10463-PA - Nasonia vitripennis
Length = 584
Score = 52.8 bits (121), Expect = 8e-06
Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 2/153 (1%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
+++++KI+LAP+ +G LP R + ++GADI E + + L+ R
Sbjct: 286 IDWKDKIMLAPLTTVGNLPFRRICKEFGADITCGEMALAPRLLKGVRE------------ 333
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLV--EHDVAAIDINMGCPKEFSIKG 435
+ +V R E + +Q+ + + +L+ E +V +D+N+GCP + K
Sbjct: 334 --EWALVKR--HESEDLFGVQIAGNNPGVLTRCCQLLNDETEVDFVDLNVGCPIDLVYKQ 389
Query: 436 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIR 534
G G +L++ + ++K+ + L IP T K R
Sbjct: 390 GGGCGMLNRLNILESVVKSATEVLDIPFTVKTR 422
>UniRef50_Q899H0 Cluster: Nitrogen regulation protein nifR3; n=24;
Clostridia|Rep: Nitrogen regulation protein nifR3 -
Clostridium tetani
Length = 322
Score = 52.8 bits (121), Expect = 8e-06
Identities = 46/153 (30%), Positives = 66/153 (43%), Gaps = 2/153 (1%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
+ + + LAP+ + L R L + G +VYTE + +K F D T D
Sbjct: 6 LELKGNVFLAPLAGVTDLAFRGLCKRMGCTLVYTE------MVSAKALFYDSDKTKD--- 56
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHD--VAAIDINMGCPKEFSIKG 435
+ R +EE V G + A V K + V IDINMGCP +K
Sbjct: 57 ------MLRFSKEELPIAVQIFGKEPDIMANVVEKYFNSNDNVCLIDINMGCPAPKIVKN 110
Query: 436 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIR 534
G G AL+ P A I++++ + PVT K R
Sbjct: 111 GEGSALMKNPKLASDIVESIKKVSTKPVTVKFR 143
>UniRef50_Q6MAU6 Cluster: Putative uncharacterized protein yohI;
n=1; Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative uncharacterized protein yohI - Protochlamydia
amoebophila (strain UWE25)
Length = 326
Score = 52.8 bits (121), Expect = 8e-06
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +1
Query: 322 QLGTCDEARALKVAKLVEHDVAA-IDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLV 498
QL D ++A+ VE A ID+N GCP G G +LL +PD Y++ K++V
Sbjct: 73 QLMGSDPELMAEMARAVERRGAQRIDLNCGCPSNTVTGRGAGSSLLKEPDHLYKVAKSMV 132
Query: 499 DNLSIPVTCKIR 534
+ +++PVT K+R
Sbjct: 133 EAVNVPVTAKLR 144
>UniRef50_A2FU21 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 322
Score = 52.8 bits (121), Expect = 8e-06
Identities = 39/160 (24%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Frame = +1
Query: 76 INMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELID--WKFLRSKRRFNDILNTV 249
IN E I+LAP + L R+L KY + +T + W S R
Sbjct: 10 INGLGEVPIVLAPQFEVNDLAFRMLVRKYNVKLCWTGMVNSHMWAIQPSSRN-------- 61
Query: 250 DYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSI 429
Y F+TC +++ +++Q+ DE+ + AK ++ IDIN GC + +
Sbjct: 62 SY---------FQTCSQDRP-LIIQMSGNDESELIACAKDLQQFAVGIDINCGCTQHIAR 111
Query: 430 KGGMGVALLSKPDK---AYQILKTLVDNLSIPVTCKIRIL 540
+G G +++ +K +++K +V ++++P++ K R++
Sbjct: 112 RGQYGYFMVNNENKRKNVIEMVKNIVASINVPLSIKFRLI 151
>UniRef50_Q04VP3 Cluster: TRNA-dihydrouridine synthase; n=4;
Leptospira|Rep: TRNA-dihydrouridine synthase -
Leptospira borgpetersenii serovar Hardjo-bovis (strain
JB197)
Length = 339
Score = 52.4 bits (120), Expect = 1e-05
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Frame = +1
Query: 283 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDV--AAIDINMGCPKEFSIKGGMGVALL 456
F + E+ + +QLG D +AL + + D + I++N+GCP + +G G L+
Sbjct: 58 FLSYSPEELPLAIQLGG-DNPKALAESSKIGEDYGYSEINLNVGCPSDRVREGNFGACLM 116
Query: 457 SKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLE 564
P++ +++ + N+SIPVT K RI + + TLE
Sbjct: 117 ETPERVAELVCAMDGNVSIPVTVKCRIGISGKETLE 152
>UniRef50_A2DHB4 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 312
Score = 52.4 bits (120), Expect = 1e-05
Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 3/162 (1%)
Frame = +1
Query: 64 LQFPINMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILN 243
L+F N E+ I LAPM + R L + G + +T F + +
Sbjct: 3 LEFLENSKRESIIFLAPMADVNDYSFRKLCRQNGVSLCWT-------------GFINAHH 49
Query: 244 TVDYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEF 423
V Q D + F T + EK VV LG+ E + AK VE+ I++N GC F
Sbjct: 50 WVTRTKQRDRDVWFTTRDNEKNLVVQLLGSNLE-ELVSCAKDVENFCDMIELNCGCTHCF 108
Query: 424 SIKGGMGVALLSKP---DKAYQILKTLVDNLSIPVTCKIRIL 540
+ + G G L+ D A +++ L+ +++ PV+ KIR++
Sbjct: 109 ASRSGCGFFLIDTQKHRDSALILIQNLIKSINKPVSIKIRLI 150
>UniRef50_Q91XI1 Cluster: tRNA-dihydrouridine synthase 3-like; n=7;
Euteleostomi|Rep: tRNA-dihydrouridine synthase 3-like -
Mus musculus (Mouse)
Length = 637
Score = 52.4 bits (120), Expect = 1e-05
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 2/153 (1%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
++ K+ LAP+ G LP R + ++GAD+ E + L+ + +L
Sbjct: 288 LDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKR----- 342
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEH--DVAAIDINMGCPKEFSIKG 435
CE+ +QL K A+L+ DV +DIN+GCP + K
Sbjct: 343 --------HPCEDI---FGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKK 391
Query: 436 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIR 534
G G AL+++ K QI++ + L +P+T K+R
Sbjct: 392 GGGCALMNRSAKFQQIVRGVNGVLDVPLTVKMR 424
>UniRef50_UPI000058804E Cluster: PREDICTED: similar to MGC53781
protein; n=3; Deuterostomia|Rep: PREDICTED: similar to
MGC53781 protein - Strongylocentrotus purpuratus
Length = 655
Score = 52.0 bits (119), Expect = 1e-05
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 2/153 (1%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
++ ++K++LAP+ +G LP R + K GADI E + L+ +
Sbjct: 278 LDVKDKLLLAPLTTVGNLPFRAVCKKLGADITCGEMAMCTNLLQGQ-------------- 323
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEH--DVAAIDINMGCPKEFSIKG 435
++ ++ R E+ V L G D + A+L+ D+ IDIN+GCP +
Sbjct: 324 SSEWALLRRHPSEDIFGVQLCGGFPDTMT--RCAELLNDRLDIDFIDINVGCPIDLVYHK 381
Query: 436 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIR 534
G G L+++ K +I++ + L IP+T K+R
Sbjct: 382 GAGSGLMNRMGKFQEIVRGMSSVLDIPLTVKMR 414
>UniRef50_Q7MXX6 Cluster: TIM-barrel protein, putative, NifR3
family; n=23; Bacteroidetes/Chlorobi group|Rep:
TIM-barrel protein, putative, NifR3 family -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 333
Score = 52.0 bits (119), Expect = 1e-05
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 1/147 (0%)
Frame = +1
Query: 100 IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTI 279
++LAPM + + R++ ++GAD+VY+E FL + D L + Q GT
Sbjct: 13 LLLAPMEDVTDVAFRIMCKQFGADLVYSE------FLSA-----DAL-----IRQVAGTF 56
Query: 280 VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKGGMGVALL 456
+E ++ + +Q+ D A ++ A+L E ID+N GCP + G G +L
Sbjct: 57 RKMAIDESERPMAVQIYGRDVASMVEAARLCESAGPNLIDLNFGCPVKRVAGKGAGSGML 116
Query: 457 SKPDKAYQILKTLVDNLSIPVTCKIRI 537
+I + +V + +PVT K R+
Sbjct: 117 RNIPLMIEITREVVKAVKLPVTVKTRL 143
>UniRef50_Q3AZ67 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=20; Cyanobacteria|Rep: Dihydrouridine synthase
TIM-barrel protein nifR3 - Synechococcus sp. (strain
CC9902)
Length = 356
Score = 52.0 bits (119), Expect = 1e-05
Identities = 26/49 (53%), Positives = 32/49 (65%)
Frame = +1
Query: 391 IDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
IDINMGCP K G G L+ P+ A QIL+ +VD +SIPVT K R+
Sbjct: 121 IDINMGCPVRKIAKKGGGSGLIRDPNLATQILEAVVDAVSIPVTVKTRL 169
>UniRef50_A6EDJ3 Cluster: Probable TIM-barrel protein, NifR3 family;
n=1; Pedobacter sp. BAL39|Rep: Probable TIM-barrel
protein, NifR3 family - Pedobacter sp. BAL39
Length = 335
Score = 52.0 bits (119), Expect = 1e-05
Identities = 40/149 (26%), Positives = 71/149 (47%)
Frame = +1
Query: 91 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 270
E ++LAPM + P R + + G D++YTE + +R + L+ +Y ++
Sbjct: 12 EFPLLLAPMEDVSDPPFRFVCKQSGVDMMYTEFISSEGLIRDAAKSRAKLDIFEY-ERPI 70
Query: 271 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVA 450
G +F + + ++ A ++A + D+ +DIN GCP + G G A
Sbjct: 71 GIQIFGSEIDHMRE------------ATEIASMAGPDL--MDINYGCPVKQVACRGAGSA 116
Query: 451 LLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
LL DK ++ K +V+ +PVT K R+
Sbjct: 117 LLQDIDKMVEMTKAVVNATHLPVTVKTRL 145
>UniRef50_Q7R3H4 Cluster: GLP_158_49916_51304; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_158_49916_51304 - Giardia lamblia
ATCC 50803
Length = 462
Score = 52.0 bits (119), Expect = 1e-05
Identities = 35/131 (26%), Positives = 60/131 (45%)
Frame = +1
Query: 106 LAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVF 285
+APMV LP RLL +YG ++ +T + S + +++ + + + D +V
Sbjct: 21 IAPMVDGSELPYRLLTRRYGVELAWTPMHSTNTLVTSSKAMTQLVDELKHGESIDRPLVL 80
Query: 286 RTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKP 465
+ L T + A +VE +NMGCP+ +++G G L+
Sbjct: 81 QLSGNNPSNFELAYNTLVQMGAGCCFDVVE-------LNMGCPQAVALRGKYGAYLMGHL 133
Query: 466 DKAYQILKTLV 498
D A +IL+TLV
Sbjct: 134 DLAEEILRTLV 144
>UniRef50_Q6MRF1 Cluster: Transcription regulator homolog yacF; n=1;
Bdellovibrio bacteriovorus|Rep: Transcription regulator
homolog yacF - Bdellovibrio bacteriovorus
Length = 337
Score = 51.6 bits (118), Expect = 2e-05
Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 1/155 (0%)
Frame = +1
Query: 73 PINMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVD 252
P+ N +LAPM I R K A +V TE L+ + ++
Sbjct: 3 PVEALKTNPFVLAPMAGITDHAFRTFIKKLDASVVVTE-LVS-------------ASGIE 48
Query: 253 YVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA-IDINMGCPKEFSI 429
Y ++D T+ + +E ++ + +QL + + A++ E D +D+N GCP +
Sbjct: 49 Y--KSDRTLKLMSFDESQRPIGIQLFGEEPEIVARAAQVAEADGCDFVDLNFGCPVPKVV 106
Query: 430 KGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIR 534
K G G A+L P +++ T+ + IP+T KIR
Sbjct: 107 KKGAGSAILKDPAAVQKMVSTVKAAIKIPLTIKIR 141
>UniRef50_Q4QEF9 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 595
Score = 51.6 bits (118), Expect = 2e-05
Identities = 38/150 (25%), Positives = 68/150 (45%)
Frame = +1
Query: 88 YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQT 267
+ K++LAP+ +G LP R + +GAD+ +E + + R ++ +L + D
Sbjct: 233 FAEKLVLAPLTTVGNLPFRRICKSFGADVTLSEMAVVFNLNRLQKSEWSLLRRHESEDIF 292
Query: 268 DGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGV 447
+ +E A+AL+ + +D +DIN GCP E +K G G
Sbjct: 293 GIQLAVSRPQE----------AATFAQALEASGF-SYDF--LDINCGCPVEKIVKSGCGC 339
Query: 448 ALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
L + ++ ++++L S PV K RI
Sbjct: 340 GLWQRTERLRDVVESLAIYQSRPVAIKCRI 369
>UniRef50_Q22A31 Cluster: TIM-barrel protein, yjbN family; n=1;
Tetrahymena thermophila SB210|Rep: TIM-barrel protein,
yjbN family - Tetrahymena thermophila SB210
Length = 480
Score = 51.6 bits (118), Expect = 2e-05
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +1
Query: 313 VVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILK 489
VV+QLG D K AK+ E +++N+GCP + G G L+ +P+ +I++
Sbjct: 160 VVIQLGGNDPDNLAKAAKICEEIGYDEVNLNVGCPSDRVQSGKFGACLMKEPELVAEIMR 219
Query: 490 TLVDNLSIPVTCKIRI 537
+ + SIPVT K R+
Sbjct: 220 KMKEACSIPVTVKCRL 235
>UniRef50_A2EN54 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 321
Score = 51.6 bits (118), Expect = 2e-05
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 3/153 (1%)
Frame = +1
Query: 91 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 270
E + LAPMV +G + R+L ++G D+ +T + ++ RSK ++Y
Sbjct: 12 EYPVCLAPMVEMGDIAFRILCHRHGCDVCWTGMINGSQWNRSKTYRQQ---QIEY----- 63
Query: 271 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVA 450
EE + +V+Q+ + L AK + IDIN+GC ++ + +G G
Sbjct: 64 --------SEEDRPLVIQISGSIDVDLLTTAKSMSEFGVPIDINLGCCQKVAKRGEYGYF 115
Query: 451 LLSKPDK---AYQILKTLVDNLSIPVTCKIRIL 540
++ K ++K++ +++P+ KIR L
Sbjct: 116 MVDSEQKRQNVVNLIKSIPSEITVPLYVKIRAL 148
>UniRef50_Q01ML2 Cluster: H0613H07.1 protein; n=10; Eukaryota|Rep:
H0613H07.1 protein - Oryza sativa (Rice)
Length = 685
Score = 51.2 bits (117), Expect = 2e-05
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 2/153 (1%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
+++ K+ LAP+ +G LP R L GADI E + L+ +
Sbjct: 328 IDFREKLYLAPLTTVGNLPFRRLCKTLGADITCGEMAMCTNLLQGQA------------- 374
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFSIKG 435
++ ++ R E+ V + G + A + +LV+++ + IDINMGCP + +
Sbjct: 375 -SEWALLRRHSSEDLFGVQI-CGAYPDTVA-RTVELVDNECSVDFIDINMGCPIDIVVNK 431
Query: 436 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIR 534
G G +LL+KP + I++ P+T K+R
Sbjct: 432 GAGSSLLTKPMRIKSIVQAASTVTEKPLTVKVR 464
>UniRef50_Q06053 Cluster: tRNA-dihydrouridine synthase 3; n=6;
Saccharomycetales|Rep: tRNA-dihydrouridine synthase 3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 609
Score = 51.2 bits (117), Expect = 2e-05
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 1/155 (0%)
Frame = +1
Query: 73 PINMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVD 252
P+++ Y KI+ +P+ +G LP R L K GAD+ Y+E + ++ ++
Sbjct: 288 PLDL-YHKKIV-SPLTTVGNLPYRRLMRKLGADVTYSEMALAVPLIQGTN--SEWALPKA 343
Query: 253 YVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIK 432
+ + G V C + Q EA A V+++ E I++N GCP + +
Sbjct: 344 HTSEFPGFGVQVACSK-----AWQAAKAAEALANSVSEISE-----INLNSGCPIDLLYR 393
Query: 433 GGMGVALLSKPDKAYQILKTL-VDNLSIPVTCKIR 534
G G ALL P + + L + + IP+T KIR
Sbjct: 394 QGSGSALLDNPARMIRCLNAMNYVSKDIPITVKIR 428
>UniRef50_Q55724 Cluster: Probable tRNA-dihydrouridine synthase 1;
n=15; Cyanobacteria|Rep: Probable tRNA-dihydrouridine
synthase 1 - Synechocystis sp. (strain PCC 6803)
Length = 355
Score = 51.2 bits (117), Expect = 2e-05
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +1
Query: 295 EEEKKKVVLQLGTC-DEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDK 471
+ + + +QL C + A K V ++DINMGCP K G G +LL +P
Sbjct: 93 DPRENPISIQLFDCRPDFMAEAAQKAVAQGAQSVDINMGCPVNKITKKGGGSSLLRQPAV 152
Query: 472 AYQILKTLVDNLSIPVTCKIRI 537
A I+KT+V + +PVT K R+
Sbjct: 153 AEAIVKTVVAAVDVPVTVKTRL 174
>UniRef50_Q9Z7D8 Cluster: Predicted oxidoreductase; n=7;
Chlamydiaceae|Rep: Predicted oxidoreductase - Chlamydia
pneumoniae (Chlamydophila pneumoniae)
Length = 335
Score = 50.4 bits (115), Expect = 4e-05
Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Frame = +1
Query: 79 NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 258
N+ + I+ AP+ P R ++ Y +++ E + L + R + +L DY
Sbjct: 9 NILLRSSIVYAPLAGFSDYPYRCMSALYQPGLMFCEMVKVEGILYAPERTSKLL---DY- 64
Query: 259 DQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKG 435
E + + QL + + + AK++E ID+N GCP + K
Sbjct: 65 ------------NENMRPIGAQLCGSNPETSGEAAKILEGLGFDLIDLNCGCPTDKITKD 112
Query: 436 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIR 534
G G LL P+ +IL +++++SIPVT KIR
Sbjct: 113 GSGSGLLKTPELIGRILDKIINSVSIPVTVKIR 145
>UniRef50_Q5KPM6 Cluster: Putative uncharacterized protein; n=2;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 407
Score = 50.4 bits (115), Expect = 4e-05
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Frame = +1
Query: 313 VVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKT 492
++ Q + + A+L+ V ID+N GCP+ ++ G+G ALL KP+ +++
Sbjct: 152 LIAQFASPNAKSLADAAELISPYVDGIDLNCGCPQRWAYNEGIGCALLRKPELVRDMVRG 211
Query: 493 LVDNL--SIPVTCKIRILKTPEATLELVNKLI 582
+ D + PV+ KIRI E T +L++ +
Sbjct: 212 VKDRMGWGWPVSIKIRIDSEQEKTEQLISNAL 243
>UniRef50_Q5ZRM0 Cluster: Nitrogen regulation protein; n=4;
Legionella pneumophila|Rep: Nitrogen regulation protein
- Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 /ATCC 33152 / DSM 7513)
Length = 329
Score = 50.0 bits (114), Expect = 6e-05
Identities = 31/73 (42%), Positives = 38/73 (52%)
Frame = +1
Query: 361 AKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRIL 540
AKL IDIN GCPK K G G ALL P K I+ + +SIP+T KIRI
Sbjct: 94 AKLQSLGADLIDINCGCPKSKIRKKGAGSALLEDPQKLIAIISRVRAAISIPLTIKIRI- 152
Query: 541 KTPEATLELVNKL 579
+ E L L ++
Sbjct: 153 QNNEKDLTLAKQI 165
>UniRef50_Q489F6 Cluster: NifR3/Smm1 family protein; n=2;
Proteobacteria|Rep: NifR3/Smm1 family protein -
Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 338
Score = 50.0 bits (114), Expect = 6e-05
Identities = 26/69 (37%), Positives = 40/69 (57%)
Frame = +1
Query: 328 GTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNL 507
G+C + A ++ IDINMGCP + K G ALL +P + +I++++V+ +
Sbjct: 73 GSCPDELAFAAKVNADNGAQIIDINMGCPAKKVNKKLAGSALLREPAQVERIVQSVVNAV 132
Query: 508 SIPVTCKIR 534
IPVT KIR
Sbjct: 133 DIPVTLKIR 141
>UniRef50_Q0G7A4 Cluster: Nitrogen regulation protein nifr3; n=2;
Aurantimonadaceae|Rep: Nitrogen regulation protein nifr3
- Fulvimarina pelagi HTCC2506
Length = 344
Score = 50.0 bits (114), Expect = 6e-05
Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 2/150 (1%)
Frame = +1
Query: 94 NKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDG 273
N++ AP+ I +P R L+ ++GA +V +E + +F++ +G
Sbjct: 18 NRVFAAPLSGISDVPFRRLSRRFGAGLVVSEMVASGEFVKGAE---------------EG 62
Query: 274 TIVFRTCEEEKKKVVLQLGTCDEARALKVAK-LVEHDVAAIDINMGCPKEFSIKGGMGVA 450
+ R + +QL D + A+ L + IDINMGCP + + G G A
Sbjct: 63 KL--RALRDGPGVHTVQLAGRDPIWMEEAARRLADEGADLIDINMGCPAKKVVGGLSGSA 120
Query: 451 LLSKPDKAYQILKTLVDNL-SIPVTCKIRI 537
L+ +PD A+ I++ V + PV+ K+R+
Sbjct: 121 LMREPDLAFSIVEATVRGAGATPVSLKMRL 150
>UniRef50_A1IF01 Cluster: Dihydrouridine synthase family protein;
n=1; Candidatus Desulfococcus oleovorans Hxd3|Rep:
Dihydrouridine synthase family protein - Candidatus
Desulfococcus oleovorans Hxd3
Length = 326
Score = 50.0 bits (114), Expect = 6e-05
Identities = 44/154 (28%), Positives = 66/154 (42%)
Frame = +1
Query: 97 KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 276
+ ILAP+ I P R LA G +VY+E + S F Y + G
Sbjct: 11 RTILAPLAGITDAPFRRLAKAAGCALVYSE------MVSSHGLF--------YQSEKTGA 56
Query: 277 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 456
++ RT EE V G A + IDIN GC + +K G G AL+
Sbjct: 57 ML-RTTPEEAPFAVQIFGGKPAVMGRAAAMVQASGAHMIDINFGCSVKKILKSGAGAALM 115
Query: 457 SKPDKAYQILKTLVDNLSIPVTCKIRILKTPEAT 558
A ++++ + D +SIP+T K+R P+ +
Sbjct: 116 KDLPLAAEVIQAVRDAVSIPLTIKMRSGWNPDGS 149
>UniRef50_O83945 Cluster: Probable tRNA-dihydrouridine synthase;
n=2; Treponema|Rep: Probable tRNA-dihydrouridine
synthase - Treponema pallidum
Length = 340
Score = 50.0 bits (114), Expect = 6e-05
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 7/158 (4%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
++ + + AP+ R +A+++ A YTE + S+ D LNT +
Sbjct: 15 LSLKGNVFFAPVAGYSDSAFRSIAIEWEASFTYTE------MVSSEAMVRDSLNTKRLI- 67
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDV--AAIDINMGCPKEFSIKG 435
R E + G+ + A + AKL+ + IDIN GCP K
Sbjct: 68 --------RRASNETHYAIQIFGS-NPAVMAETAKLIVDSAQPSCIDINAGCPMPKITKT 118
Query: 436 GMGVALLSKPDKAYQILKTLVD-----NLSIPVTCKIR 534
G G AL +P + Y+++K + D + IPVT KIR
Sbjct: 119 GAGAALTREPTRLYEVVKAVADAVYAQDARIPVTVKIR 156
>UniRef50_UPI0000D5693C Cluster: PREDICTED: similar to
dihydrouridine synthase 4-like; n=3; Coelomata|Rep:
PREDICTED: similar to dihydrouridine synthase 4-like -
Tribolium castaneum
Length = 451
Score = 49.6 bits (113), Expect = 8e-05
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 3/162 (1%)
Frame = +1
Query: 103 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRS-KRRFNDILNTVDYVDQTDGTI 279
I APMVR L R L Y D+ YT ++ F +S K R N+ ++ D +
Sbjct: 27 ICAPMVRYSKLQFRNLVKSYNCDLCYTPMILADSFCKSGKARANEFTTNMN-----DTPL 81
Query: 280 VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLS 459
+ + KV +G A +V +D+N GCP+ ++ G+G +L
Sbjct: 82 ITQFAAN---KVYDFVGA---------AYMVSPFCDGVDLNCGCPQRWAKLQGLGCIMLE 129
Query: 460 KPDKAYQILKTLVDNLSIP--VTCKIRILKTPEATLELVNKL 579
KP+ Y ++K + + P V+ K+R+ K ++E+ +L
Sbjct: 130 KPEVIYDLVKQCRNVIPKPFTVSVKLRLQKDLRRSVEICRQL 171
>UniRef50_Q31II6 Cluster: Dihydrouridine synthase; n=1;
Thiomicrospira crunogena XCL-2|Rep: Dihydrouridine
synthase - Thiomicrospira crunogena (strain XCL-2)
Length = 320
Score = 49.6 bits (113), Expect = 8e-05
Identities = 41/145 (28%), Positives = 62/145 (42%)
Frame = +1
Query: 100 IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTI 279
I LAPM I R + + GA +E + K LR + ++ + D+T
Sbjct: 12 IALAPMAGITDRVYRDICRESGASYAVSEMVASKKQLRESAK-----SSTRHADKT---- 62
Query: 280 VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLS 459
E ++V LGT E ID+NMGCP + G AL+
Sbjct: 63 ------ETSPRIVQLLGTHPEELVDAALWQQSQGADIIDLNMGCPAKKVCDVAAGSALMG 116
Query: 460 KPDKAYQILKTLVDNLSIPVTCKIR 534
+P++ I K+L + + +PVT KIR
Sbjct: 117 QPERVADIFKSLTEAIDLPVTVKIR 141
>UniRef50_Q0F181 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=1; Mariprofundus ferrooxydans PV-1|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3 -
Mariprofundus ferrooxydans PV-1
Length = 341
Score = 49.6 bits (113), Expect = 8e-05
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 1/149 (0%)
Frame = +1
Query: 91 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 270
+N ++LAPM I LP R + ++G ++ TE + + R + D
Sbjct: 17 DNPLVLAPMAGITDLPFRRICKRFGVGLMVTEMIASRAVDMGRERTERMAELGD------ 70
Query: 271 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAK-LVEHDVAAIDINMGCPKEFSIKGGMGV 447
++ V +Q+ D + A+ V H +DINMGCP + K G
Sbjct: 71 ----------DEHPVSIQIAGSDPEFVTEAARWAVGHGADFVDINMGCPVKKICKQVAGS 120
Query: 448 ALLSKPDKAYQILKTLVDNLSIPVTCKIR 534
A+L ++L +V + +PVT KIR
Sbjct: 121 AMLRDEALVARVLAAVVAAVDVPVTLKIR 149
>UniRef50_A4EC62 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 347
Score = 49.6 bits (113), Expect = 8e-05
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 3/151 (1%)
Frame = +1
Query: 91 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 270
E ++APM + R++ + GA++ Y+E + + + Y
Sbjct: 16 EQPFLMAPMAGVTDPAYRIMCRRRGANLAYSEMVS--------------VAGLAYASNKT 61
Query: 271 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEH---DVAAIDINMGCPKEFSIKGGM 441
+V +EE++ V G+ E A VA + E ++ IDINM CP + G
Sbjct: 62 WRLVL-PADEEQQICVQLFGSKPEQFASAVAAVEERVGDRLSLIDINMACPARKVVTKGE 120
Query: 442 GVALLSKPDKAYQILKTLVDNLSIPVTCKIR 534
G AL+ PD A +I++ V +PVT KIR
Sbjct: 121 GSALMRTPDLAEKIVEAAVGAAHVPVTVKIR 151
>UniRef50_Q8ZAX7 Cluster: tRNA-dihydrouridine synthase B; n=214;
Proteobacteria|Rep: tRNA-dihydrouridine synthase B -
Yersinia pestis
Length = 321
Score = 49.6 bits (113), Expect = 8e-05
Identities = 26/54 (48%), Positives = 33/54 (61%)
Frame = +1
Query: 391 IDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPE 552
IDINMGCP + + G ALL PD QIL +V+ + +PVT KIR +PE
Sbjct: 94 IDINMGCPAKKVNRKLAGSALLQHPDLVKQILSAVVNAVDVPVTLKIRTGWSPE 147
>UniRef50_Q5SMC7 Cluster: TRNA-dihydrouridine synthase; n=2; Thermus
thermophilus|Rep: TRNA-dihydrouridine synthase - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 342
Score = 49.2 bits (112), Expect = 1e-04
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +1
Query: 301 EKKKVVLQLGTCDEARALKVAKLVE-HDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAY 477
E+ + LQL D + A++ E I++N+GCP E + +GG G LL +
Sbjct: 56 EEHPIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVR 115
Query: 478 QILKTLVDNLSIPVTCKIRI 537
+ILK + + + +PVT K+R+
Sbjct: 116 EILKAMGEAVRVPVTVKMRL 135
>UniRef50_Q9VJ06 Cluster: CG10495-PA; n=2; Sophophora|Rep:
CG10495-PA - Drosophila melanogaster (Fruit fly)
Length = 396
Score = 49.2 bits (112), Expect = 1e-04
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 5/164 (3%)
Frame = +1
Query: 103 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIV 282
+ APMVR L R L G + +T +I +D +N + Q +
Sbjct: 26 VSAPMVRYSKLEFRRLVRLNGVQLAFTPMMI-----------SDSINNSEKARQNE---- 70
Query: 283 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSK 462
F T +++ ++ Q D + A+L+ V ID+N GCP+ +++ G G +L +
Sbjct: 71 FSTGADDQP-LIAQFAAKDPTEFVTSAQLIYPYVDGIDLNCGCPQSWAMAKGYGCGMLRQ 129
Query: 463 PDKAYQILKTLVDNL--SIPVTCKIRILKTPEA---TLELVNKL 579
P+ +Q+++ + L V+ K+R+L E+ T++L +L
Sbjct: 130 PELVHQVVQEVRRTLPGDFSVSVKMRLLGGEESLQRTIDLARQL 173
>UniRef50_Q5CRK5 Cluster: Ylr401cp-like protein with 2 CCCH domains
plus Dus1p tRNA dihydrouridine synthase Tim barrel; n=2;
Cryptosporidium|Rep: Ylr401cp-like protein with 2 CCCH
domains plus Dus1p tRNA dihydrouridine synthase Tim
barrel - Cryptosporidium parvum Iowa II
Length = 707
Score = 49.2 bits (112), Expect = 1e-04
Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 3/153 (1%)
Frame = +1
Query: 88 YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQT 267
+ NK+ILAP+ +G LP R L LK+GAD+ +E ++ N+IL+ +
Sbjct: 314 FRNKLILAPLTTVGNLPFRRLCLKFGADVTVSEMVL----------CNEILS-----GKA 358
Query: 268 DGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLV-EH-DVAAIDINMGCPKEFSIKGGM 441
+ + EE K +QL +++ +K + + EH + IDIN CP + G
Sbjct: 359 SELALLKKSPEE-KYFGIQLAGGNKSTIIKTGEFINEHCEFDFIDINAACPLKSLHDKGA 417
Query: 442 GVALLSKPDKAYQILKTLVDNLSIP-VTCKIRI 537
G L+ + + ++K L + VT K+R+
Sbjct: 418 GSILVDRVSELETMVKGLKKVMDGKLVTVKVRM 450
>UniRef50_Q9UTH9 Cluster: tRNA dihydrouridine synthase Dus3; n=1;
Schizosaccharomyces pombe|Rep: tRNA dihydrouridine
synthase Dus3 - Schizosaccharomyces pombe (Fission
yeast)
Length = 617
Score = 49.2 bits (112), Expect = 1e-04
Identities = 41/157 (26%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
+++ ++ ILAP+ +G P R L GAD Y+E + + ++ + ++ ++Y
Sbjct: 235 IDWRDRKILAPLTTVGNPPFRRLCGSLGADTFYSEMAMCYPLMQGHQPEWALVRGLNYER 294
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHD---VAAIDINMGCPKEFSIK 432
+ + R + + +QL T +A K A+++ V +D+N GCP + +
Sbjct: 295 E-----MMR--GGRRGILGVQLATGKLWQATKTAQVIAEQCDGVDFLDLNCGCPIDLVFR 347
Query: 433 GGMGVALLSKPDKAYQILKTLVDNLS--IPVTCKIRI 537
G G +LL P + + L+ + D +S IPVT K+R+
Sbjct: 348 QGAGSSLLENPGRLLRNLQGM-DAVSGQIPVTVKLRM 383
>UniRef50_A0EAZ6 Cluster: Chromosome undetermined scaffold_87, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_87,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 346
Score = 48.8 bits (111), Expect = 1e-04
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +1
Query: 313 VVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILK 489
VV QLG D + K A++ E I++N+GCP E G G L+ +P Q +K
Sbjct: 67 VVCQLGGNDPEKLAKAAQIAEQAGFDEINLNVGCPSERVQDGAFGACLMKEPHLVAQCMK 126
Query: 490 TLVDNLSIPVTCKIRI 537
+ + + IP T K R+
Sbjct: 127 KMKEAVKIPCTLKCRL 142
>UniRef50_Q0VPD7 Cluster: TIM-barrel protein, yjbN family; n=4;
Bacteria|Rep: TIM-barrel protein, yjbN family -
Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM
11573)
Length = 348
Score = 48.4 bits (110), Expect = 2e-04
Identities = 23/86 (26%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +1
Query: 283 FRTCEEEKKKVVLQLGTCDEARALKVAKLV-EHDVAAIDINMGCPKEFSIKGGMGVALLS 459
F +E+ V LQLG D + + ++ ++ I++N+GCP + +G +G L++
Sbjct: 78 FLDFNDEEHPVALQLGGSDPQQLAQATRIAGDYGYDEINLNVGCPSDRVQQGKIGAILMA 137
Query: 460 KPDKAYQILKTLVDNLSIPVTCKIRI 537
+P+ + ++ + +++PVT K RI
Sbjct: 138 EPELVARCVEAMQAEVTVPVTVKTRI 163
>UniRef50_A4S604 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 287
Score = 48.4 bits (110), Expect = 2e-04
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 3/147 (2%)
Frame = +1
Query: 106 LAPMVRIGTLPMR-LLALKYGADIVYTEELIDWKFLRSKR--RFNDILNTVDYVDQTDGT 276
LAP+ + G P R L A ++GA++V +E + R R + D D
Sbjct: 6 LAPLTKGGNAPFRRLCASEFGAEVVVSEMAFARFLAKGARVERARVRRHEGDAGDCFGAQ 65
Query: 277 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 456
I EE ++ G E +D+N GCP + K G+G ALL
Sbjct: 66 IATNAIEEGVNAALIASG--------------EFGADFVDLNCGCPIHETWKRGLGAALL 111
Query: 457 SKPDKAYQILKTLVDNLSIPVTCKIRI 537
KP K ++++ + + +P+T KIR+
Sbjct: 112 KKPAKLERLVEGIASRIDVPLTVKIRL 138
>UniRef50_Q09504 Cluster: Uncharacterized tRNA-dihydrouridine
synthase-like protein C45G9.2; n=2; Caenorhabditis|Rep:
Uncharacterized tRNA-dihydrouridine synthase-like
protein C45G9.2 - Caenorhabditis elegans
Length = 284
Score = 48.4 bits (110), Expect = 2e-04
Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 3/157 (1%)
Frame = +1
Query: 115 MVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVFRTC 294
MVR L R L Y D+ +T + F+ S++ + L+ C
Sbjct: 1 MVRYSKLAFRQLVRVYDVDVCFTPMIYAKNFIESEKCRSSELSV---------------C 45
Query: 295 EEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKA 474
E + +V Q T D + A++V +D+N GCPK G G ALLSKP+
Sbjct: 46 EGDSPLIV-QFATDDPFVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALLSKPELL 104
Query: 475 YQILKTLVDNLSIP---VTCKIRILKTPEATLELVNK 576
+++ + P V+ KIRI E T++L K
Sbjct: 105 ADMVRQTRARIPDPDFSVSLKIRINHDIEKTVDLCRK 141
>UniRef50_UPI0000499494 Cluster: conserved hypothetical protein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 515
Score = 48.0 bits (109), Expect = 2e-04
Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 1/156 (0%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
++ + K+IL + G LP R + ++G D+ TE ++ + K
Sbjct: 166 LDLKGKLILPSLCTFGNLPFRKVVKRFGCDVTMTEMIMAESLVEGKT------------- 212
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCD-EARALKVAKLVEHDVAAIDINMGCPKEFSIKGG 438
++ +V R E+ + L +G A+A +V V+ D ++N CP ++ K G
Sbjct: 213 -SEWALVKRDSSEDIFGIQLCVGNSMLAAKACQVLNSVDCDF--YELNCACPIDYVYKKG 269
Query: 439 MGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKT 546
MG L+ +P + +L + PV K+R K+
Sbjct: 270 MGAQLIERPKRIESLLHAMRSVTERPVAIKVRTGKS 305
>UniRef50_A7HK00 Cluster: Dihydrouridine synthase DuS; n=4;
Thermotogaceae|Rep: Dihydrouridine synthase DuS -
Fervidobacterium nodosum Rt17-B1
Length = 322
Score = 48.0 bits (109), Expect = 2e-04
Identities = 44/144 (30%), Positives = 66/144 (45%)
Frame = +1
Query: 106 LAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVF 285
LAPM + P R L L++GA +T E+I K + + N+I Y + D
Sbjct: 13 LAPMAGVTDYPFRKLCLQHGAYFAFT-EMISAKSVIINVKINEI-----YFPRQD----- 61
Query: 286 RTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKP 465
EK +V +QL D A + A +V+ +D+N GCP IK G G ALL
Sbjct: 62 -----EKDRVGVQLFGSDYAELSEAAAIVQEKGLWVDLNAGCPVSKVIKKGAGSALLKDL 116
Query: 466 DKAYQILKTLVDNLSIPVTCKIRI 537
+ ++++ + L T K RI
Sbjct: 117 GEFRKVVRAMRSVLK-RFTVKTRI 139
>UniRef50_A6PPM6 Cluster: Dihydrouridine synthase, DuS; n=1;
Victivallis vadensis ATCC BAA-548|Rep: Dihydrouridine
synthase, DuS - Victivallis vadensis ATCC BAA-548
Length = 343
Score = 47.6 bits (108), Expect = 3e-04
Identities = 47/166 (28%), Positives = 71/166 (42%), Gaps = 3/166 (1%)
Frame = +1
Query: 91 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 270
EN +++AP+ LP R A G +TE ++D + ++ Y +
Sbjct: 15 ENALLMAPLSGFTDLPYRRAARAGGCRFAFTE-MVD-------------VASLTYARERS 60
Query: 271 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLV-EHDVAAIDINMGCPKEFSIKGGMGV 447
++ R EEE V QL D + A +V E++ + +D N+GCP K G G
Sbjct: 61 AGMLRRGPEEEFLGV--QLVGADHEFIRRAADVVNEYEFSVVDFNLGCPVPKVAKKGAGA 118
Query: 448 ALLSKPDKAYQILKTLVDNLSIPVTCKIRIL--KTPEATLELVNKL 579
L D A + + PVT KIRI+ + P TL L L
Sbjct: 119 ELGRHLDAALACFAIIAERSRHPVTAKIRIVDAEDPAPTLALAKGL 164
>UniRef50_A4YUQ6 Cluster: Putative tRNA-dihydrouridine synthase;
n=4; Rhizobiales|Rep: Putative tRNA-dihydrouridine
synthase - Bradyrhizobium sp. (strain ORS278)
Length = 317
Score = 47.6 bits (108), Expect = 3e-04
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +1
Query: 316 VLQLGTCDEARALKVAKLVEHDVA-AIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKT 492
V+QL C+ + AK+ A IDINMGCP G G AL+ D A +++
Sbjct: 51 VVQLAGCEAHWMAEGAKVAADGGADIIDINMGCPARHVTGGQSGSALMRDLDHALTLIEA 110
Query: 493 LVDNLSIPVTCKIRI 537
V+ + +PVT K+R+
Sbjct: 111 TVEAVDVPVTLKMRL 125
>UniRef50_Q5ZVH8 Cluster: Zinc binding TIM barrel protein, YjbN
family; n=4; Legionella pneumophila|Rep: Zinc binding
TIM barrel protein, YjbN family - Legionella pneumophila
subsp. pneumophila (strain Philadelphia 1 /ATCC 33152 /
DSM 7513)
Length = 334
Score = 47.2 bits (107), Expect = 4e-04
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Frame = +1
Query: 226 FNDILNTVDYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHD-VAAIDIN 402
+ ++ T + D + F + E + +QLG D++ +K A + E I++N
Sbjct: 40 YTEMQTTGAVQNNPDRALYFNSVEHP---LAIQLGGADKSALVKCAIIAEQKGFNEINLN 96
Query: 403 MGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
+GCP + G G L+ +P+ ++ + + IPVT K RI
Sbjct: 97 LGCPSDKVQAGRFGACLMKEPEHVADCIRAIKQVVGIPVTAKTRI 141
>UniRef50_Q30WR3 Cluster: Dihydrouridine synthase family protein;
n=3; Desulfovibrio|Rep: Dihydrouridine synthase family
protein - Desulfovibrio desulfuricans (strain G20)
Length = 376
Score = 47.2 bits (107), Expect = 4e-04
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Frame = +1
Query: 280 VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHD-VAAIDINMGCPKEFSIKGGMGVALL 456
VF EE +V QL D A+ VE + +DINMGC +K G G LL
Sbjct: 105 VFSWRPEELPALVCQLFGADPQDMAAAARRVESEGFFGVDINMGCSVAPIVKKGCGADLL 164
Query: 457 SKPDKAYQILKTLVDNLSIPVTCKIRI--LKTPEATLELVNKL 579
P++A +++ + +S+PV K+R PE + L +L
Sbjct: 165 RDPERAVRMVDAVRRAVSVPVFVKMRTGWSPDPEPAVNLARRL 207
>UniRef50_Q5KC68 Cluster: TRNA dihydrouridine synthase, putative;
n=2; Filobasidiella neoformans|Rep: TRNA dihydrouridine
synthase, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 725
Score = 47.2 bits (107), Expect = 4e-04
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 7/158 (4%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
+N+E LAP+ +G LP R L + YGA I +E + + Y
Sbjct: 354 LNWEGGRYLAPLTTVGNLPFRRLCVDYGATITVSEMALAQPLV--------------YGA 399
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA------IDINMGCPKEF 423
+ + +V R E +K +Q+ R + A+++ + + +D+NMGCP +
Sbjct: 400 KEEWALVRR--HESEKMFGVQVAGGFPNRMVPAAEVIANTIGKGGGVDFVDVNMGCPIDL 457
Query: 424 SIKGGMGVALLSKPDKAYQILKTLVDNL-SIPVTCKIR 534
G G AL+ P + ++L + L IP+T K R
Sbjct: 458 VFNQGAGSALMDSPGRLGKLLVGMNRALGDIPLTVKFR 495
>UniRef50_Q89LQ7 Cluster: Nitrogen regulation protein; n=22;
Alphaproteobacteria|Rep: Nitrogen regulation protein -
Bradyrhizobium japonicum
Length = 371
Score = 46.8 bits (106), Expect = 5e-04
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +1
Query: 316 VLQLGTCDEARALKVAKLVEHDVA-AIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKT 492
V+QL C+ + A++ E + A IDINMGCP G G AL+ D A ++
Sbjct: 105 VVQLAGCEAHWMAEGARIAEAEGADIIDINMGCPARHVTGGQSGSALMRDLDHAVGLIDA 164
Query: 493 LVDNLSIPVTCKIRI 537
+ + +PVT K+R+
Sbjct: 165 TIAAVKVPVTLKMRL 179
>UniRef50_A4SY29 Cluster: Dihydrouridine synthase, DuS; n=1;
Polynucleobacter sp. QLW-P1DMWA-1|Rep: Dihydrouridine
synthase, DuS - Polynucleobacter sp. QLW-P1DMWA-1
Length = 347
Score = 46.8 bits (106), Expect = 5e-04
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Frame = +1
Query: 298 EEKKKVVLQLGTC---DEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPD 468
+++ VVLQLG D AR+ ++A+ +D ID+N GCP E +G G L+++P
Sbjct: 45 QDQHPVVLQLGGSEPNDLARSAELAQQWGYD--EIDLNCGCPSERVQRGAFGACLMAEPK 102
Query: 469 KAYQILKTLVDNLSIPVTCKIRI 537
+K + + + IP++ K R+
Sbjct: 103 LVADCVKAMQNAVDIPISVKHRL 125
>UniRef50_A3VNG3 Cluster: Dihydrouridine synthase TIM-barrel
protein; n=5; Alphaproteobacteria|Rep: Dihydrouridine
synthase TIM-barrel protein - Parvularcula bermudensis
HTCC2503
Length = 368
Score = 46.8 bits (106), Expect = 5e-04
Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 3/152 (1%)
Frame = +1
Query: 91 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 270
E +ILAPM I LP R AL+ GA +V +E + +++R ++ D
Sbjct: 27 ERPVILAPMSGITDLPFRRAALRAGAPLVVSEMVASEEWVR---------------ERPD 71
Query: 271 GTIVFRTCEEEKKKVVLQLGTCDEARALK--VAKLVEHDVAAIDINMGCPKEFSIKGGM- 441
+ + V+ G EAR ++ AK IDINMGCP + G +
Sbjct: 72 VALRAALPTGDSLNVIQLAGR--EARWMREGAAKAEALGADIIDINMGCPAR-KVTGLLS 128
Query: 442 GVALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
G AL+ D A ++K + S PVT K+R+
Sbjct: 129 GSALMRDVDHALSLIKATLSGTSRPVTLKMRL 160
>UniRef50_Q4Q391 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 493
Score = 46.8 bits (106), Expect = 5e-04
Identities = 35/132 (26%), Positives = 61/132 (46%)
Frame = +1
Query: 100 IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTI 279
+I APMVR R + +G + YT L+ F++S +
Sbjct: 98 LIQAPMVRCSRPAFRQVCRAWGTRVSYTHMLMAESFVKSPHARH---------------A 142
Query: 280 VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLS 459
F E E + +V QL A + A L+ ID+N GCP+ +++K G+G ALL
Sbjct: 143 EFARYEGENR-LVAQLAAKSGPAAAQAALLLRPYCDGIDLNCGCPQRWAMKEGIGAALLD 201
Query: 460 KPDKAYQILKTL 495
+P++ +++++
Sbjct: 202 QPERVADMVRSI 213
>UniRef50_Q2IG49 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=2; Anaeromyxobacter|Rep: Dihydrouridine
synthase TIM-barrel protein nifR3 - Anaeromyxobacter
dehalogenans (strain 2CP-C)
Length = 352
Score = 46.4 bits (105), Expect = 7e-04
Identities = 39/149 (26%), Positives = 61/149 (40%)
Frame = +1
Query: 88 YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQT 267
+ + LAP+ + P R + + GA YTE + + + L T Y+D+
Sbjct: 8 FPGRYFLAPLAGVSDRPFRAICRRMGASFAYTE------MVSAHGLMHGALQTSSYLDRE 61
Query: 268 DGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGV 447
F + VL AR VA V+ ID+NM CP + G G
Sbjct: 62 PDEDPFAVQIFASEPDVL-------ARGAVVA--VQAGAGMIDVNMACPVKKVCGSGAGA 112
Query: 448 ALLSKPDKAYQILKTLVDNLSIPVTCKIR 534
A+ P K + ++ + + +PVT KIR
Sbjct: 113 AMGRDPRKVEEAVRAIRAAVPVPVTVKIR 141
>UniRef50_Q21L63 Cluster: Dihydrouridine synthase, DuS; n=1;
Saccharophagus degradans 2-40|Rep: Dihydrouridine
synthase, DuS - Saccharophagus degradans (strain 2-40 /
ATCC 43961 / DSM 17024)
Length = 318
Score = 46.4 bits (105), Expect = 7e-04
Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 3/150 (2%)
Frame = +1
Query: 97 KIILAPMVRIGTLPMR-LLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDG 273
+I LAPM + MR +++ G DI TE + + + F +D +T
Sbjct: 2 RIFLAPMEGVVDHHMRNIISSVGGVDICVTEFIRVTDHVLPNKIFKKACPELDENSETPA 61
Query: 274 TIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVAL 453
C V LG+ A A A+ E AID+N GCP + + G L
Sbjct: 62 LYRGAHCPVR----VQLLGSNPSALAANAARAAELGAVAIDLNFGCPAKTVNRHKGGACL 117
Query: 454 LSKPDKAYQILKTL--VDNLSIPVTCKIRI 537
L + D + I+ + S PVT KIR+
Sbjct: 118 LDETDTVFDIVNAVRKATPASTPVTAKIRL 147
>UniRef50_Q14SX5 Cluster: Putative dihydrouridine synthase; n=1;
Ruminococcus flavefaciens|Rep: Putative dihydrouridine
synthase - Ruminococcus flavefaciens
Length = 332
Score = 46.4 bits (105), Expect = 7e-04
Identities = 45/153 (29%), Positives = 65/153 (42%), Gaps = 1/153 (0%)
Frame = +1
Query: 79 NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 258
N+ LAPM + RL+ +YGA V +E ++ K + Y
Sbjct: 9 NVTIPRTAALAPMAGVADRAYRLMCKRYGAAYVVSE-MVSAK-------------GICYS 54
Query: 259 DQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGG 438
D+ + T EEE+ V G+ + A V ++++ IDINMGCP + G
Sbjct: 55 DRKTAELCTVT-EEERPMAVQLFGSEPDFMAEAVKIVLDYRPDIIDINMGCPVPKVVGTG 113
Query: 439 MGVALLSKPDKAYQILKTLVDNL-SIPVTCKIR 534
G AL+ P A I + V PVT KIR
Sbjct: 114 AGSALMKDPALAAAITEAAVKAAGDTPVTVKIR 146
>UniRef50_A5GPV9 Cluster: TRNA-dihydrouridine synthase A; n=21;
Cyanobacteria|Rep: TRNA-dihydrouridine synthase A -
Synechococcus sp. (strain RCC307)
Length = 335
Score = 46.4 bits (105), Expect = 7e-04
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +1
Query: 304 KKKVVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQ 480
+K + LQLG D A + A+L E I++N+GCP KG G L+++P + +
Sbjct: 67 EKPIALQLGGDDPALLAEAAELAERWGYDEINLNVGCPSPKVKKGRFGACLMAEPQQVAR 126
Query: 481 ILKTLVDNLSIPVTCKIRI 537
++ + +PVT K RI
Sbjct: 127 CVEAMGAACRLPVTVKHRI 145
>UniRef50_A5EVV4 Cluster: Dihydrouridine synthase; n=1;
Dichelobacter nodosus VCS1703A|Rep: Dihydrouridine
synthase - Dichelobacter nodosus (strain VCS1703A)
Length = 318
Score = 46.4 bits (105), Expect = 7e-04
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 2/162 (1%)
Frame = +1
Query: 100 IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTI 279
++LAPM I LP R L ++G+ E ++D + ++ + +
Sbjct: 14 VLLAPMAGISDLPYRSLCQRFGSHYTIAE-MVDAR--------------PQFLAMPESQL 58
Query: 280 VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKGGMGVALL 456
+ ++ + ++QL D + A++++ IDINMGCP + K G ALL
Sbjct: 59 RLQFDDDARFPKIVQLVGGDPYLMAETAQVMQALGCDVIDINMGCPAKKVGKQNAGSALL 118
Query: 457 SKPDKAYQILKTLVDNLSIPVTCKIRI-LKTPEATLELVNKL 579
S + +IL + +SIPVT K R+ T+E V K+
Sbjct: 119 SDLPQVEKILAQVTRVVSIPVTLKTRLGFNEQTMTIETVAKI 160
>UniRef50_A1AW94 Cluster: TIM-barrel protein, yjbN family; n=1;
Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)|Rep: TIM-barrel protein, yjbN family - Ruthia
magnifica subsp. Calyptogena magnifica
Length = 322
Score = 46.4 bits (105), Expect = 7e-04
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Frame = +1
Query: 283 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKGGMGVALLS 459
F CE +VLQLG + + AK+ + I+IN+GCP GV L+
Sbjct: 54 FNVCEHP---LVLQLGGSEPKEMAQAAKIAQDWGYNEININVGCPSNRVQSSNFGVCLMQ 110
Query: 460 KPDKAYQILKTLVDNLSIPVTCKIRI-LKTPEATLELVNKLITYQ 591
P Q + + + +P+T K RI + ++ ELVN + T +
Sbjct: 111 TPQVVAQCVDAMRQMVDVPITVKSRIGVDNMDSYDELVNFVATVE 155
>UniRef50_Q2RM54 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=1; Moorella thermoacetica ATCC 39073|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3 -
Moorella thermoacetica (strain ATCC 39073)
Length = 334
Score = 46.0 bits (104), Expect = 0.001
Identities = 43/148 (29%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Frame = +1
Query: 100 IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTI 279
+I+APM RLLA + GA + YTE + + + + + +L+
Sbjct: 16 LIMAPMAGYTDRVFRLLAREAGAALTYTEMISAQGLIYNNKNTHALLDL----------- 64
Query: 280 VFRTCEEEKKKVVLQL-GTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 456
+ E V +QL G E A V A ID+NMGCP +K G G AL+
Sbjct: 65 -----KGEPGPVAVQLFGREPEIMAAATRIAVAAGAAIIDLNMGCPTPKIVKNGEGSALM 119
Query: 457 SKPDKAYQILKTLVDNLS-IPVTCKIRI 537
+A I+ +V +PVT K+R+
Sbjct: 120 RDLPRAAAIVAAMVRAAGPVPVTVKMRL 147
>UniRef50_Q3E0H8 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=5; Chloroflexi (class)|Rep: Dihydrouridine
synthase TIM-barrel protein nifR3 - Chloroflexus
aurantiacus J-10-fl
Length = 407
Score = 46.0 bits (104), Expect = 0.001
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +1
Query: 301 EKKKVVLQLGTCDEARALKVAKLVEHDVA-AIDINMGCPKEFSIKGGMGVALLSKPDKAY 477
E++ + +Q+ D A++VE A IDIN GCP GG G ALL K
Sbjct: 137 EERPLTMQISGNDPDLVANAARVVEQLGADIIDINCGCPSPKVTGGGHGSALLRDLPKME 196
Query: 478 QILKTLVDNLSIPVTCKIR 534
++L+ + + + IPVT K R
Sbjct: 197 RLLRAVREAVQIPVTLKFR 215
>UniRef50_A1RNI1 Cluster: TIM-barrel protein, yjbN family; n=30;
Bacteria|Rep: TIM-barrel protein, yjbN family -
Shewanella sp. (strain W3-18-1)
Length = 343
Score = 46.0 bits (104), Expect = 0.001
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +1
Query: 298 EEKKKVVLQLGTCDEARALKVAKLV-EHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKA 474
+E+ + LQLG + + AKL E +++N+GCP + G G L+++P+
Sbjct: 73 QEEHPLALQLGGSNPQDLARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELV 132
Query: 475 YQILKTLVDNLSIPVTCKIRI 537
+ + + + IPVT K RI
Sbjct: 133 AECVDAMKQVVDIPVTVKTRI 153
>UniRef50_Q9RRP8 Cluster: NifR3 protein; n=2; Deinococcus|Rep: NifR3
protein - Deinococcus radiodurans
Length = 406
Score = 45.6 bits (103), Expect = 0.001
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 1/160 (0%)
Frame = +1
Query: 103 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIV 282
+LAPM PMR LA + GA + E+I + L +L + + + +
Sbjct: 95 VLAPMAGYSDAPMRQLAAEQGA-LWTVSEMISARGL--------VLGS-----EQESLSL 140
Query: 283 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDV-AAIDINMGCPKEFSIKGGMGVALLS 459
R E+ + V G + A V K AAID+N+GCP ++G G LL
Sbjct: 141 GRPYPGEQGRAVQLFGADPDVLADAVGKAEAWFAPAAIDLNLGCPVP-KVRGKGGACLLQ 199
Query: 460 KPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKL 579
P+ AY++++ + + V+ KIR+ ++E+ L
Sbjct: 200 TPEVAYELVRAMRQATGLDVSAKIRLGWDENRSVEIAQGL 239
>UniRef50_Q607L4 Cluster: TIM-barrel protein, yjbN family; n=10;
Proteobacteria|Rep: TIM-barrel protein, yjbN family -
Methylococcus capsulatus
Length = 327
Score = 45.6 bits (103), Expect = 0.001
Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 1/146 (0%)
Frame = +1
Query: 100 IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTI 279
+ILAPM + LP R L ++GA + +E + L++ R+
Sbjct: 12 VILAPMAGVTDLPFRRLCRQFGAGLAVSEMISASPALQATRKSR---------------- 55
Query: 280 VFRTCEEEKKKVVLQLGTCDEARALKVAK-LVEHDVAAIDINMGCPKEFSIKGGMGVALL 456
+ + E + +Q+ D + A+ V+ IDINMGCP + G ALL
Sbjct: 56 LRQDHRGEPGPISVQIVGADPREMAEAARRTVDLGADIIDINMGCPAKKVCNVAAGSALL 115
Query: 457 SKPDKAYQILKTLVDNLSIPVTCKIR 534
IL+ +V + +PVT KIR
Sbjct: 116 RDEKLVANILEAVVQAVPVPVTLKIR 141
>UniRef50_Q7R9R0 Cluster: Uncharacterized protein family UPF0034,
putative; n=7; Plasmodium|Rep: Uncharacterized protein
family UPF0034, putative - Plasmodium yoelii yoelii
Length = 531
Score = 45.2 bits (102), Expect = 0.002
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +1
Query: 313 VVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPK-EFSIKGGMGVALLSKPDKAYQIL 486
+V QLG D + A LVE I+IN+GCP + + KG G L+ P I+
Sbjct: 210 IVCQLGGSDPTSLSEAAILVEQAGYDEININVGCPSTKVANKGAFGAYLMKNPQLVKNIV 269
Query: 487 KTLVDNLSIPVTCKIR 534
+ + IPVT KIR
Sbjct: 270 YEIKKKVQIPVTVKIR 285
>UniRef50_Q7R1J1 Cluster: GLP_38_15456_16676; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_38_15456_16676 - Giardia lamblia
ATCC 50803
Length = 406
Score = 45.2 bits (102), Expect = 0.002
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Frame = +1
Query: 307 KKVVLQLGTCDEARALKVAKLVEHD------VAAIDINMGCPKEFSIKGGMGVALLSKPD 468
+K++LQL + + A+L+ HD + A+DIN+GCP + G G +
Sbjct: 113 EKIILQLCGNNPSTFRAAAELL-HDSPIASQLVALDINLGCPASCASSKGYGFYVAQNWP 171
Query: 469 KAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLI 582
+QI+ PVTCKIR L + E T++ + L+
Sbjct: 172 LVHQIISETSSARLFPVTCKIRPLNSIEKTIDYMVLLV 209
>UniRef50_UPI000023CFE7 Cluster: hypothetical protein FG01258.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG01258.1 - Gibberella zeae PH-1
Length = 362
Score = 44.8 bits (101), Expect = 0.002
Identities = 32/118 (27%), Positives = 55/118 (46%)
Frame = +1
Query: 106 LAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVF 285
LAPMVR G L R KYG D+ ++ ++ +F RS + +D + F
Sbjct: 29 LAPMVRYGKLAFRQTVHKYGVDLCWSPMILAKEFNRS-----------SFARDSDWS--F 75
Query: 286 RTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLS 459
T E ++ ++Q G + + LV +D+N GCP+ ++ +G AL++
Sbjct: 76 ST-EPKQPPTIVQFGANVPLELARASALVAPSSQGVDLNCGCPQSWACAETLGAALMN 132
>UniRef50_Q7UKE8 Cluster: Putative uncharacterized protein; n=2;
Planctomycetaceae|Rep: Putative uncharacterized protein
- Rhodopirellula baltica
Length = 364
Score = 44.8 bits (101), Expect = 0.002
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Frame = +1
Query: 298 EEKKKVVLQLGTCDEARALKVAKLV--EHDVAAIDINMGCP-KEFSIKGGMGVALLSKPD 468
+E + + +Q+ D KV + + E+ V+ +DIN GCP ++ + K G LL +P+
Sbjct: 85 DEPRPLAVQIWDNDPETMAKVGRRLAEEYRVSVVDINFGCPVRQVTEKAHSGSYLLREPN 144
Query: 469 KAYQILKTLVDNLS-IPVTCKIRI 537
+ + I+ LV + PVT KIR+
Sbjct: 145 RMHAIISRLVQVCAPTPVTAKIRL 168
>UniRef50_Q6M9N8 Cluster: Putative uncharacterized protein; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative uncharacterized protein - Protochlamydia
amoebophila (strain UWE25)
Length = 297
Score = 44.8 bits (101), Expect = 0.002
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +1
Query: 355 KVAKLVEH-DVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKI 531
+ AK++E +D+N GCP + K G G LL P+ +I+ +V + IPVT KI
Sbjct: 41 QAAKIIEELGFDIVDLNCGCPVDKITKDGSGSGLLKTPELIGEIVCNMVSAVKIPVTVKI 100
Query: 532 R 534
R
Sbjct: 101 R 101
>UniRef50_A6W1E8 Cluster: Dihydrouridine synthase DuS; n=1;
Marinomonas sp. MWYL1|Rep: Dihydrouridine synthase DuS -
Marinomonas sp. MWYL1
Length = 335
Score = 44.8 bits (101), Expect = 0.002
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +1
Query: 325 LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDN 504
LG+ E A + ID+N GCP + G G LL PD Y I+ + D
Sbjct: 88 LGSNAELMAESALNATKAGAKHIDVNFGCPAKRVNGHGGGSVLLQTPDALYDIMSAIRDT 147
Query: 505 L--SIPVTCKIRILKTPEATL 561
L IPV+ KIR+ EA L
Sbjct: 148 LPSDIPVSAKIRLGFEDEALL 168
>UniRef50_Q4Q669 Cluster: Dihydrouridine synthase (Dus), putative;
n=3; Leishmania|Rep: Dihydrouridine synthase (Dus),
putative - Leishmania major
Length = 661
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = +1
Query: 388 AIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTP 549
A+D+N+GCP+ + +G G L+ + + I+ TL L +PVT KIR+ P
Sbjct: 283 AVDVNLGCPQGIARRGHYGSFLMEDWELIHTIVHTLHVELEVPVTVKIRVFDHP 336
>UniRef50_Q9PGB5 Cluster: tRNA-dihydrouridine synthase A; n=8;
Proteobacteria|Rep: tRNA-dihydrouridine synthase A -
Xylella fastidiosa
Length = 340
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +1
Query: 304 KKKVVLQLGTCDEARALKVAKL-VEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQ 480
++ V LQLG + A K A++ V+ + I++N GCP + G G L+ +P
Sbjct: 69 EQPVALQLGGSEPALLAKAARIAVDWGYSEINLNCGCPSDRVQAGSFGARLMREPALVAD 128
Query: 481 ILKTLVDNLSIPVTCKIRI 537
+ + +S+PVT K R+
Sbjct: 129 CVAAMAAVVSVPVTVKCRL 147
>UniRef50_A5WG83 Cluster: TIM-barrel protein, yjbN family; n=4;
Moraxellaceae|Rep: TIM-barrel protein, yjbN family -
Psychrobacter sp. PRwf-1
Length = 348
Score = 44.4 bits (100), Expect = 0.003
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +1
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVA-KLVEHDVAAIDINMGCPKEFSIKGG 438
+TD + + T E +VLQLG D + + A + + ++IN+GCP +
Sbjct: 63 KTDRLLRYDTLEHP---LVLQLGGADISEMTQCAVEAQKRGFNEVNINVGCPSDRVQHNK 119
Query: 439 MGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
+G L+++PD +++ + ++ IPVT K RI
Sbjct: 120 IGACLMAEPDTVAALVRNMQAHVDIPVTVKHRI 152
>UniRef50_A7EMF2 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 342
Score = 44.4 bits (100), Expect = 0.003
Identities = 32/127 (25%), Positives = 52/127 (40%)
Frame = +1
Query: 109 APMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVFR 288
APMVR L R +YG D+ +T ++ +F RS D+ T
Sbjct: 35 APMVRYSKLAFRETVAQYGVDLCWTPMILAKEFNRSV-----FARDSDFTTSPTST---- 85
Query: 289 TCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPD 468
+ Q G C + L+ + IDIN GCP+ ++ +G AL+ K +
Sbjct: 86 -------PTIAQFGVCSPLEISRSTTLIAPYINGIDINCGCPQSWACACSIGAALMHKRE 138
Query: 469 KAYQILK 489
+++K
Sbjct: 139 LVAEMVK 145
>UniRef50_Q8G7W8 Cluster: Possible NifR3-like protein; n=4;
Bifidobacterium|Rep: Possible NifR3-like protein -
Bifidobacterium longum
Length = 414
Score = 44.0 bits (99), Expect = 0.004
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Frame = +1
Query: 79 NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 258
N+ ++L+PM + P R++ +YG D +Y E+I + L +
Sbjct: 42 NITVPTPVVLSPMAGVTNWPFRVICEEYGPDGLYVAEMITARALVAHN------------ 89
Query: 259 DQTDGTIVFRTCEEEKKKVV--LQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFS 426
R C K + + LQL + + + AK+V A +D+N GCP
Sbjct: 90 -----PKALRLCHFAKSEKIRSLQLYGVNPSITEQAAKIVVDGNMADHVDLNFGCPVPKV 144
Query: 427 IKGGMGVALLSKPDKAYQILKTLV---DNLSIPVTCKIRI 537
+ G G AL K D ++L+ +V + IPVT KIR+
Sbjct: 145 TRRGGGSALPWKTDIFTELLQRVVAVCEPAGIPVTAKIRV 184
>UniRef50_O25427 Cluster: Probable tRNA-dihydrouridine synthase;
n=9; Epsilonproteobacteria|Rep: Probable
tRNA-dihydrouridine synthase - Helicobacter pylori
(Campylobacter pylori)
Length = 328
Score = 44.0 bits (99), Expect = 0.004
Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 3/155 (1%)
Frame = +1
Query: 82 MNYENK--IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDY 255
M+++NK + LAP+ LP R + K+G D+ +E + + + + + +L
Sbjct: 1 MDFKNKKWLFLAPLAGYTDLPFRSVVKKFGVDVTTSEMVSSHSLVYAFDKTSKMLEKSPL 60
Query: 256 VDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKG 435
D I K+ VV + A++ +EH V ID N GCP
Sbjct: 61 EDHFMAQI-----SGSKESVVKE--------AVEKINALEH-VNGIDFNCGCPAPKVANH 106
Query: 436 GMGVALLSKPDKAYQILKTLVDNLSIPVT-CKIRI 537
G G LL + ++LKT+ +N S +T K+R+
Sbjct: 107 GNGSGLLKDLNHLVKLLKTIRENTSKKITSVKVRL 141
>UniRef50_Q9A7I4 Cluster: Nitrogen regulation protein Nifr3; n=2;
Caulobacter|Rep: Nitrogen regulation protein Nifr3 -
Caulobacter crescentus (Caulobacter vibrioides)
Length = 315
Score = 43.6 bits (98), Expect = 0.005
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +1
Query: 391 IDINMGCP-KEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
ID+N GCP KE + G AL+ +PD A ++ V+ + +PVT K+R+
Sbjct: 78 IDLNFGCPAKEVAAGAACGSALMREPDLAEALVAAAVEAVDVPVTVKMRL 127
>UniRef50_Q7UXK8 Cluster: Putative uncharacterized protein; n=3;
Planctomycetaceae|Rep: Putative uncharacterized protein
- Rhodopirellula baltica
Length = 374
Score = 43.6 bits (98), Expect = 0.005
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 4/156 (2%)
Frame = +1
Query: 100 IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTI 279
++ A + LPMR++A ++ A E ++D +FL S + + +D D
Sbjct: 40 VVQAALSGYSDLPMRVIARRHSASYTICEVMLD-QFLLSLTKREKTRHFLDIAD------ 92
Query: 280 VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLS 459
EE +G E + KLVE ID+N GCP + + G LS
Sbjct: 93 ------EEHPVGGQLMGAEPEQFSAGALKLVEAGFDVIDVNFGCPVKKVLGRCRGGFHLS 146
Query: 460 KPDKAYQILKTLVDNL--SIPVTCKIR--ILKTPEA 555
+P A +IL+ D + IPVT K+R + TPE+
Sbjct: 147 QPAVAIEILRRTRDVVPDHIPVTVKMRRGMDDTPES 182
>UniRef50_Q7X346 Cluster: Putative uncharacterized protein; n=1;
uncultured Acidobacteria bacterium|Rep: Putative
uncharacterized protein - uncultured Acidobacteria
bacterium
Length = 355
Score = 43.6 bits (98), Expect = 0.005
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 1/145 (0%)
Frame = +1
Query: 106 LAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVF 285
+APM + LP R L ++ GA I +E + + L+ KR ++ ++
Sbjct: 1 MAPMTKGSNLPYRRLCVELGARITVSEMTLARR-LKQKRN-------------SEFALIR 46
Query: 286 RTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKP 465
R E V L DE A A + +DIN GCP ++ + G+G ++ +P
Sbjct: 47 RFPGEPCFGVQLAGNKPDET-AWAAALVESRGADFVDINFGCPIDYFTRKGLGASIGRQP 105
Query: 466 DKAYQILKTLVDNL-SIPVTCKIRI 537
+ ++++ + ++ +IPVT KIR+
Sbjct: 106 QRMRRLVEAIKGSVTNIPVTAKIRL 130
>UniRef50_A7CWF1 Cluster: Putative TIM-barrel protein, nifR3 family;
n=1; Opitutaceae bacterium TAV2|Rep: Putative TIM-barrel
protein, nifR3 family - Opitutaceae bacterium TAV2
Length = 389
Score = 43.2 bits (97), Expect = 0.007
Identities = 33/151 (21%), Positives = 69/151 (45%), Gaps = 3/151 (1%)
Frame = +1
Query: 94 NKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDG 273
+ + L+P+ LPMRL + G + W D++N ++++ G
Sbjct: 10 SNLFLSPLAGYTNLPMRLTVRELGG--------LGWAT-------TDLVNARSLIERSKG 54
Query: 274 TI-VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVA 450
+ + T ++ + G+ E E ++D+NMGCP + + G G A
Sbjct: 55 AMKLVETAPGDQPLAIQLFGSVPEEMRDAAVICKELGAQSVDVNMGCPVKKVVGIGGGAA 114
Query: 451 LLSKPDKAYQILKTLVDNL--SIPVTCKIRI 537
++++ +K +++ +V+ + IPVT K+R+
Sbjct: 115 MMTELNKTAALVRGMVEAVGNKIPVTAKMRL 145
>UniRef50_A4RQU5 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 608
Score = 43.2 bits (97), Expect = 0.007
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 3/161 (1%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
+++++K+ LAP+ +G LP R + GADI E + L+
Sbjct: 243 IDFKDKLYLAPLTTVGNLPFRRVCKTLGADITCGEMALCTSLLQGL-------------- 288
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEH--DVAAIDINMGCPKEFSIKG 435
++ ++ R E+ V + G D + +L+E DV IDINMGCP + +
Sbjct: 289 PSEWALLRRHKSEDIFGVQICGGYPDSVT--RCCQLLEDTIDVDFIDINMGCPIDSVCQK 346
Query: 436 GMGVALLSKPDKAYQILKTLVDNL-SIPVTCKIRILKTPEA 555
G G +L KP K +++ L +T K R+ T ++
Sbjct: 347 GYGSMMLEKPKKMETVIRAASAALGKCSLTFKTRMAYTDKS 387
>UniRef50_Q7R684 Cluster: GLP_574_116690_118078; n=1; Giardia
lamblia ATCC 50803|Rep: GLP_574_116690_118078 - Giardia
lamblia ATCC 50803
Length = 462
Score = 43.2 bits (97), Expect = 0.007
Identities = 51/196 (26%), Positives = 80/196 (40%), Gaps = 21/196 (10%)
Frame = +1
Query: 64 LQFPINMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILN 243
+Q+P ILAPMVR +R LA GA VYT ++ LR D+ N
Sbjct: 1 MQWPSPSTLYTGPILAPMVRASFPGIRALAAALGASAVYTGAIVG-DSLRDVVTEVDLSN 59
Query: 244 TVDYVDQTDGTIVFRTCE---------------EEKKKVVLQLGTCDEARALKVAKLVEH 378
+ + T + +C E +V+QL + K+ ++
Sbjct: 60 MIAKISTTRRSAGSPSCVIISVPIQATETPGQFEPAIPLVVQLTVNEYDDVDKICSILAP 119
Query: 379 DVAAIDINMGCPKEFSIKGGMGVALLSKPDKAY-QILKTLVD-----NLSIPVTCKIRIL 540
ID+N+GC +F++ GG G L+ K + + LK L I + K R+L
Sbjct: 120 WCVGIDLNLGCGAQFAVSGGRGQRLVDKAENVIARFLKALQQIEDSGGRRISFSIKQRLL 179
Query: 541 KTPEATLELVNKLITY 588
+ E E VNK+ +
Sbjct: 180 GSVE---ETVNKMCAF 192
>UniRef50_A6U9Y2 Cluster: Dihydrouridine synthase DuS; n=2;
Sinorhizobium|Rep: Dihydrouridine synthase DuS -
Sinorhizobium medicae WSM419
Length = 385
Score = 42.7 bits (96), Expect = 0.009
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +1
Query: 313 VVLQLGTCDEARALKVAKLVE-HDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILK 489
V LQLG D + + A++ E + I++N+GCP + G G L+ +P +
Sbjct: 76 VALQLGGNDPVKMAEAARIGEAYGYDEINMNVGCPSDRVQSGTFGACLMQEPALVADCIA 135
Query: 490 TLVDNLSIPVTCKIRI 537
+ + IPVT K RI
Sbjct: 136 AMKAAVEIPVTVKCRI 151
>UniRef50_Q9JUP6 Cluster: tRNA-dihydrouridine synthase C; n=4;
Neisseria|Rep: tRNA-dihydrouridine synthase C -
Neisseria meningitidis serogroup A
Length = 333
Score = 42.7 bits (96), Expect = 0.009
Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 3/152 (1%)
Frame = +1
Query: 91 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQ-T 267
+ +IILAPM + MR L + G +E + +F+R + + YV +
Sbjct: 12 KTRIILAPMQGLVDDVMRDLLTRIGG----YDECVS-EFVRITHTVHSRATWLKYVPEIA 66
Query: 268 DGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGV 447
+G F V LG+ + A + V ID+N GCP + G
Sbjct: 67 NGNKTF----SGTPCTVQLLGSDADNMAANALEAVRFGADKIDLNFGCPAPTVNRHKGGA 122
Query: 448 ALLSKPDKAYQILKTLVDNL--SIPVTCKIRI 537
LL +P+ + I+KTL + L IP+T K+R+
Sbjct: 123 ILLKEPELIFHIVKTLRERLPAHIPLTAKMRL 154
>UniRef50_A4BWB1 Cluster: Putative uncharacterized protein; n=5;
Bacteroidetes|Rep: Putative uncharacterized protein -
Polaribacter irgensii 23-P
Length = 317
Score = 42.3 bits (95), Expect = 0.011
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Frame = +1
Query: 310 KVVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQIL 486
+V+ Q+ T D L V+K V ++ N+GCP K GMG L+S +K IL
Sbjct: 62 EVIPQIITNDAEEFLFVSKYVRALGYKELNWNLGCPYPMVTKRGMGSGLISDAEKINSIL 121
Query: 487 KTLVDNLSIPVTCKIRI-LKTPEATLELVNKLITYQFQS 600
+ + I V+ K+R+ + PE L ++ L TY ++
Sbjct: 122 HKVHNESDILVSMKMRMGYENPEEILGVLPILDTYPLKN 160
>UniRef50_Q583Y8 Cluster: TRNA-dihydrouridine synthase 4, putative;
n=3; Trypanosoma|Rep: TRNA-dihydrouridine synthase 4,
putative - Trypanosoma brucei
Length = 419
Score = 42.3 bits (95), Expect = 0.011
Identities = 40/149 (26%), Positives = 61/149 (40%), Gaps = 4/149 (2%)
Frame = +1
Query: 103 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIV 282
I APMVR R L +G DI YT ++ F S+ Q + +I
Sbjct: 62 IQAPMVRCSRPAFRKLCRLWGTDISYTHMIMADSFACSEA-----------ARQAEFSIY 110
Query: 283 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSK 462
+ +++ QL + A A +V AID+N GCP+ + G+G ALL
Sbjct: 111 -----SGETRLITQLASSSGPTAATAAAIVAPWCDAIDLNCGCPQRRVMADGLGAALLRN 165
Query: 463 P----DKAYQILKTLVDNLSIPVTCKIRI 537
P D + L + +P K+R+
Sbjct: 166 PEVVADTVRCVRNALEGGVELPCVVKMRV 194
>UniRef50_A6DU09 Cluster: Dihydrouridine synthase family protein;
n=1; Lentisphaera araneosa HTCC2155|Rep: Dihydrouridine
synthase family protein - Lentisphaera araneosa HTCC2155
Length = 334
Score = 41.9 bits (94), Expect = 0.015
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Frame = +1
Query: 295 EEEKKKVVLQL-GTCDEARALKVAKLVEHDVA-AIDINMGCPKEFSIKGGMGVALLSKPD 468
+E+ K+V Q+ G + + ++K V+ +V +DINMGCP +K G AL++ P+
Sbjct: 76 KEKNIKIVAQVWGKNPDKFSEAISKYVDPEVFDGVDINMGCPVAKIVKQGGCSALINTPE 135
Query: 469 KAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLI 582
A +++ +PV+ K R T T E + L+
Sbjct: 136 IAKELVLAAKAATKLPVSVKTRTGITAHKTEEWMTHLL 173
>UniRef50_Q6MNE4 Cluster: Dihydrouridine synthase family protein;
n=1; Bdellovibrio bacteriovorus|Rep: Dihydrouridine
synthase family protein - Bdellovibrio bacteriovorus
Length = 323
Score = 41.5 bits (93), Expect = 0.020
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = +1
Query: 325 LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDN 504
LG E AL + V+ +D+N GCP + + G +LL D+ + I+ T+
Sbjct: 70 LGGQAEPLALNAQRAVKLGALGVDLNFGCPAKTVNRHDGGASLLKSCDRVFNIVDTVRKA 129
Query: 505 L--SIPVTCKIRI-LKTPEATLEL 567
+ +PVT KIR+ P LE+
Sbjct: 130 VPADVPVTAKIRLGFDDPTKCLEI 153
>UniRef50_Q0C0N1 Cluster: Putative tRNA-dihydrouridine synthase;
n=1; Hyphomonas neptunium ATCC 15444|Rep: Putative
tRNA-dihydrouridine synthase - Hyphomonas neptunium
(strain ATCC 15444)
Length = 345
Score = 41.5 bits (93), Expect = 0.020
Identities = 47/156 (30%), Positives = 69/156 (44%), Gaps = 4/156 (2%)
Frame = +1
Query: 82 MNYEN-KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 258
+N+E ++ LAPM PMR A+ +GA V +E ++ + L R
Sbjct: 16 INFEAPRVWLAPMSGATDAPMRRQAVHFGAPAVVSE-MVAGEMLAKAR------------ 62
Query: 259 DQTDGTIVFRTCEEEKKKV-VLQLGTCDEARALKVAKLV-EHDVAAIDINMGCPKEFSIK 432
+V RTC E ++QL L A L+ E V IDINMGCP +
Sbjct: 63 ----ADVVRRTCRHEGAGYWIVQLAARRPEDMLAGAVLMAEAGVDVIDINMGCPSKQVTG 118
Query: 433 GGMGVALLSKPDKAYQILKTLVDNLS-IPVTCKIRI 537
G G AL+ A +I+ + + PVT K+R+
Sbjct: 119 GQSGSALMRDLPLAGEIIDAALQGAAGRPVTLKMRL 154
>UniRef50_Q8YMN5 Cluster: Transcriptional regulator; n=5;
Bacteria|Rep: Transcriptional regulator - Anabaena sp.
(strain PCC 7120)
Length = 349
Score = 41.1 bits (92), Expect = 0.027
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +1
Query: 364 KLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLS-IPVTCKIRI 537
+L +++A +D+NMGCP + +G LL P K QIL+ L ++ P+T K+R+
Sbjct: 101 ELCGYNIAGVDLNMGCPAPRIYRKNVGGGLLLSPAKVEQILEELRQAVNDRPLTVKMRV 159
>UniRef50_A6GGZ7 Cluster: Putative uncharacterized protein; n=2;
Bacteria|Rep: Putative uncharacterized protein -
Plesiocystis pacifica SIR-1
Length = 362
Score = 41.1 bits (92), Expect = 0.027
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +1
Query: 313 VVLQLGTCD-EARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILK 489
+ LQLG D EA A E ++IN+GCP + G GV L+ P + +
Sbjct: 77 LALQLGGDDPEALAACARIAAELGYDEVNINVGCPSDRVQSGNFGVCLMKDPARVRDCVV 136
Query: 490 TLVDNLSIPVTCKIRI 537
+ + + +PVT K RI
Sbjct: 137 AMREAVELPVTVKHRI 152
>UniRef50_A2EF32 Cluster: Dihydrouridine synthase, putative; n=1;
Trichomonas vaginalis G3|Rep: Dihydrouridine synthase,
putative - Trichomonas vaginalis G3
Length = 318
Score = 41.1 bits (92), Expect = 0.027
Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 4/153 (2%)
Frame = +1
Query: 91 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 270
E I LAPM I L R+L +G + +T L ++ + N NT
Sbjct: 17 EKPICLAPMAEISDLSWRMLIRNHGVKVCWTGMLNAHQWSQGSGYQNKFFNT-------- 68
Query: 271 GTIVFRTCEEEKKKVVLQLGTC-DEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGV 447
C E+ + G+ D+ + AK + +D+N+GC ++ + + G
Sbjct: 69 -------CPEDHPLIAQIAGSNEDQDLIVAAAKDLAKYADGVDVNLGCTQKIASRSEYGY 121
Query: 448 ALL---SKPDKAYQILKTLVDNLSIPVTCKIRI 537
++ K +K ++ + L ++ P+ KIRI
Sbjct: 122 FMVDNCQKREKTLELFRRLCKEVNCPICAKIRI 154
>UniRef50_Q6A959 Cluster: TIM-barrel enzyme, NifR3 family; n=1;
Propionibacterium acnes|Rep: TIM-barrel enzyme, NifR3
family - Propionibacterium acnes
Length = 411
Score = 40.7 bits (91), Expect = 0.035
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 6/163 (3%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
++ + ++LAPM + R L + GA + Y E+I + L + D
Sbjct: 46 VSVDTPVVLAPMAGVTNAAFRQLCAEQGAGL-YVCEMITSRGLV----YGD--------H 92
Query: 262 QTDGTIVFRTCEEEKKKVVLQL--GTCDEARALKVAKLVEHDVAAIDINMGCP-KEFSIK 432
+T G + F CE+ + + + G EA ++ K + V +D+N GCP + + K
Sbjct: 93 KTHGMLAFAECEDVRSVQLYGVDPGMVGEATSILCEK---YGVNHVDLNFGCPVPKVTRK 149
Query: 433 GGMGVALLSKPDKAYQILKTLV---DNLSIPVTCKIRILKTPE 552
GG GV L K D+ ++ V D +PVT K RI PE
Sbjct: 150 GGGGV-LPWKLDRFAAVVSAAVQAGDAHGVPVTVKTRIGIDPE 191
>UniRef50_Q1QZQ6 Cluster: Dihydrouridine synthase, DuS; n=1;
Chromohalobacter salexigens DSM 3043|Rep: Dihydrouridine
synthase, DuS - Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB13768)
Length = 340
Score = 40.7 bits (91), Expect = 0.035
Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 4/143 (2%)
Frame = +1
Query: 121 RIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVFRTCEE 300
RIG PM + +++ + +DW R + L ++
Sbjct: 8 RIGLAPMEGVIDVVTRELLSADGALDWTVTEFVRVVDTRLPARVFLRHCPELETAACATA 67
Query: 301 EKKKVVLQL-GTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAY 477
V LQL G+ EA A + +D+N GCP + + G +LL +P++ +
Sbjct: 68 SGTPVHLQLLGSDPEALAANAVRAQALGARQVDLNFGCPAKTVNRHDGGASLLRQPERVH 127
Query: 478 QILKTLVDNLS---IPVTCKIRI 537
+++ + + L+ I VT KIR+
Sbjct: 128 TVVRAVAEALAPLGIAVTAKIRL 150
>UniRef50_A5KKR3 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus torques ATCC 27756|Rep: Putative
uncharacterized protein - Ruminococcus torques ATCC
27756
Length = 211
Score = 40.3 bits (90), Expect = 0.046
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +1
Query: 325 LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDN 504
L C E KL ++ I++N+GCP + + G G L+ P++ L+ + N
Sbjct: 66 LTNCAEDFVQTAKKLEQYGYKEINLNVGCPSKTVVTKGRGAGFLAFPERLDLFLEEVFQN 125
Query: 505 LSIPVTCKIRI 537
I ++ K RI
Sbjct: 126 CPIDISVKTRI 136
>UniRef50_Q550J6 Cluster: Putative uncharacterized protein; n=2;
Dictyostelium discoideum|Rep: Putative uncharacterized
protein - Dictyostelium discoideum AX4
Length = 392
Score = 40.3 bits (90), Expect = 0.046
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +1
Query: 355 KVAKLVEHDVAAIDINMGCP--KEFSIKGGMGVALLSKPDKAYQILKTLVD--NLSIPVT 522
K+A + +D +DINMGCP K S K G AL++ P A +I+K + N PV+
Sbjct: 87 KIANELGYD--GVDINMGCPSRKVLSPKQASGAALITNPSLAKEIVKITKEALNFEKPVS 144
Query: 523 CKIRI 537
K RI
Sbjct: 145 VKTRI 149
>UniRef50_Q4FQ57 Cluster: Possible tRNA-dihydrouridine synthase;
n=5; Moraxellaceae|Rep: Possible tRNA-dihydrouridine
synthase - Psychrobacter arcticum
Length = 350
Score = 39.9 bits (89), Expect = 0.061
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +1
Query: 325 LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDN 504
LG+ + A A E AIDIN GCP + G LL +P+ Y I+ +
Sbjct: 105 LGSEAQLMAENAAHACELGAPAIDINFGCPAKTVNSHRGGSVLLDEPEVMYDIISAVRQA 164
Query: 505 L--SIPVTCKIRILKTPEATLE 564
+ +IPV+ KIR+ T + ++
Sbjct: 165 VPANIPVSAKIRLGYTDTSRMD 186
>UniRef50_Q056Y8 Cluster: TRNA-dihydrouridine synthase A; n=1;
Buchnera aphidicola str. Cc (Cinara cedri)|Rep:
TRNA-dihydrouridine synthase A - Buchnera aphidicola
subsp. Cinara cedri
Length = 348
Score = 39.9 bits (89), Expect = 0.061
Identities = 15/49 (30%), Positives = 30/49 (61%)
Frame = +1
Query: 391 IDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
I++N+GCP + + G G+ L++ P Y ++K + + I ++ KIR+
Sbjct: 112 INLNIGCPSKKAKSGNFGIYLMNNPILVYNLIKAIYLTVPIQISIKIRL 160
>UniRef50_Q17M24 Cluster: tRNA-dihydrouridine synthase; n=1; Aedes
aegypti|Rep: tRNA-dihydrouridine synthase - Aedes
aegypti (Yellowfever mosquito)
Length = 578
Score = 39.9 bits (89), Expect = 0.061
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 1/128 (0%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
+N+++K+ L+P+ +G LP R + +YG DI E + + +
Sbjct: 225 INFKDKLYLSPLTTVGNLPFRRICKEYGVDITCGEMACSVPIINGMMQEWALTKR----H 280
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKGG 438
++ + C +K V + A +V + EH DV +D+N+GCP + G
Sbjct: 281 PSEDLFGVQICGHNQKLV---------SYATQV--IAEHADVDFVDLNLGCPIDLIFNQG 329
Query: 439 MGVALLSK 462
G ALL +
Sbjct: 330 GGSALLRR 337
>UniRef50_Q4FLD8 Cluster: Putative uncharacterized protein; n=2;
Candidatus Pelagibacter ubique|Rep: Putative
uncharacterized protein - Pelagibacter ubique
Length = 330
Score = 39.5 bits (88), Expect = 0.081
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +1
Query: 304 KKKVVLQLGTCDE---ARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKA 474
+K + LQ+G A A KV + +D I++N+GCP + K G L+ +P+
Sbjct: 56 EKPIALQIGGSSPTLLAEATKVGEDFGYD--EINLNLGCPSKKVEKNKFGACLMKEPNLV 113
Query: 475 YQILKTLVDNLSIPVTCKIRI 537
L + +PVT K RI
Sbjct: 114 ADCLSKMQSVTKLPVTIKTRI 134
>UniRef50_O51243 Cluster: Putative uncharacterized protein BB0225;
n=3; Borrelia burgdorferi group|Rep: Putative
uncharacterized protein BB0225 - Borrelia burgdorferi
(Lyme disease spirochete)
Length = 335
Score = 39.5 bits (88), Expect = 0.081
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = +1
Query: 313 VVLQLGTCDEARALKVAKLVEH--DVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQIL 486
+ +Q+ T + ALK +++E + ++N+GCP G L+ ++ +IL
Sbjct: 61 IAIQIATNSKNDALKAIQILEKHFNFDEYNLNVGCPSLKIQNANCGACLMGNANQVGEIL 120
Query: 487 KTLVDNLSIPVTCKIRI 537
KT+ +N + P++ K R+
Sbjct: 121 KTMKENTNKPISIKHRL 137
>UniRef50_Q1N033 Cluster: Putative uncharacterized protein; n=1;
Oceanobacter sp. RED65|Rep: Putative uncharacterized
protein - Oceanobacter sp. RED65
Length = 321
Score = 39.5 bits (88), Expect = 0.081
Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 5/152 (3%)
Frame = +1
Query: 97 KIILAPMVRIGTLPMRLLALKYGA-DIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD- 270
++ LAPM + + MR L + G D TE L L +R F I D+ +T
Sbjct: 2 QLSLAPMEGLVDVHMRTLLTRGGYFDYCVTEFLRVTTQLLPERSFRRICPESDHQWKTPA 61
Query: 271 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVA 450
GT V + LG+ A A + E ++IN GCP F + G G A
Sbjct: 62 GTPVH----------LQLLGSDPVAMAENACRAAELGAPVVNINFGCPSRF-VNGRCGGA 110
Query: 451 -LLSKPDKAYQILKTLVDNL--SIPVTCKIRI 537
LL PD+ + IL+++ L +P+T K+R+
Sbjct: 111 YLLQFPDQIHTILESVRKALPEHVPLTAKMRL 142
>UniRef50_Q3IKP0 Cluster: TRNA-dihydrouridine synthase C; n=5;
Alteromonadales|Rep: TRNA-dihydrouridine synthase C -
Pseudoalteromonas haloplanktis (strain TAC 125)
Length = 326
Score = 39.1 bits (87), Expect = 0.11
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +1
Query: 325 LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDN 504
LG A A K + ID+N GCP + K G LL P+ Y+I+K + D
Sbjct: 70 LGQVAGALAENAVKAISLGSHGIDLNFGCPAKTVNKSKGGAVLLKDPEHMYEIIKAVRDA 129
Query: 505 LSI--PVTCKIRI 537
+ V+ KIR+
Sbjct: 130 VDSKHQVSAKIRL 142
>UniRef50_Q8RFK3 Cluster: Nitrogen regulation protein NIFR3; n=3;
Fusobacterium nucleatum|Rep: Nitrogen regulation protein
NIFR3 - Fusobacterium nucleatum subsp. nucleatum
Length = 307
Score = 38.7 bits (86), Expect = 0.14
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Frame = +1
Query: 364 KLVEH-DVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTL--VDNLSIPVTCKIR 534
K +E+ V I++N GCP + + G G AL+ +P+K +IL + V N ++ KIR
Sbjct: 74 KYIENLGVKHINLNCGCPMKKIVNCGYGAALVKEPEKIKKILSEIKSVLNNDTKLSVKIR 133
Query: 535 I-LKTPEATLEL 567
I K PE +++
Sbjct: 134 IGYKEPENYIQI 145
>UniRef50_Q83D40 Cluster: TIM-barrel protein, yjbN family; n=7;
Bacteria|Rep: TIM-barrel protein, yjbN family - Coxiella
burnetii
Length = 353
Score = 38.7 bits (86), Expect = 0.14
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 301 EKKKVVLQLGTCDEARALKVAKLVEHD-VAAIDINMGCPKEFSIKGGMGVALLSKPDKAY 477
E+ + LQ+G D A+L E I++N+GCP I G G LL + +
Sbjct: 81 EEHPLALQVGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVIAGRFGACLLKEAELVA 140
Query: 478 QILKTLVDNLSIPVTCKIR 534
+ + ++IPV+ K R
Sbjct: 141 DCVAAMSAEVNIPVSVKTR 159
>UniRef50_Q5HJT5 Cluster: Probable tRNA-dihydrouridine synthase;
n=41; Bacilli|Rep: Probable tRNA-dihydrouridine synthase
- Staphylococcus aureus (strain COL)
Length = 328
Score = 38.7 bits (86), Expect = 0.14
Identities = 25/81 (30%), Positives = 38/81 (46%)
Frame = +1
Query: 295 EEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKA 474
E+E+ V G E +L + ID+NMGCP K G G L+ +PD A
Sbjct: 67 EDEQPMVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLILRPDVA 126
Query: 475 YQILKTLVDNLSIPVTCKIRI 537
+I++ +PV+ K R+
Sbjct: 127 AEIIQATKAG-GLPVSVKTRL 146
>UniRef50_Q7R3K2 Cluster: GLP_158_4738_3071; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_158_4738_3071 - Giardia lamblia ATCC
50803
Length = 555
Score = 38.3 bits (85), Expect = 0.19
Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 3/151 (1%)
Frame = +1
Query: 91 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 270
+ ++LAPM +GT+P R L + YG +I E + L + ++ + D+
Sbjct: 173 QKPLMLAPMCTVGTIPFRRLCIHYGCEITLCEMVFARDILHGDAQ--ELRKIKRHPDEKC 230
Query: 271 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVA 450
I +E ++V + C ID+N CP++ + K G A
Sbjct: 231 FGIQLAGRGQELMEIVNFISQCCSC-------------DFIDLNAACPQDIATKKCCGAA 277
Query: 451 LLSKPDKAYQILKTLV---DNLSIPVTCKIR 534
L + K + +V ++ +PV KIR
Sbjct: 278 LAANLKKLVSSVDCMVRGGEHYGVPVFLKIR 308
>UniRef50_Q2HDP2 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 641
Score = 38.3 bits (85), Expect = 0.19
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +1
Query: 358 VAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTL-VDNLSIPVTCKIR 534
+++L+ H + +D+N GCP + K G G ALL K ++++ + + +P+T KIR
Sbjct: 328 LSQLLPH-LRLVDLNCGCPVDAVFKSGSGSALLDSHSKLERMIRGMNAVSGEVPITAKIR 386
Query: 535 I 537
+
Sbjct: 387 M 387
>UniRef50_Q8XYX1 Cluster: tRNA-dihydrouridine synthase C; n=26;
Proteobacteria|Rep: tRNA-dihydrouridine synthase C -
Ralstonia solanacearum (Pseudomonas solanacearum)
Length = 326
Score = 37.5 bits (83), Expect = 0.33
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +1
Query: 313 VVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKT 492
V+ LG+ E A A+ ID+N GCP + + G G LL+ P+ ++I+ T
Sbjct: 67 VIQLLGSDPEWLARNAAQAATVSPHGIDLNFGCPAKVVNRHGGGAMLLATPELLHRIVST 126
Query: 493 L--VDNLSIPVTCKIRI 537
+ I VT K+R+
Sbjct: 127 VRAAVPARIAVTAKMRL 143
>UniRef50_Q127F8 Cluster: Dihydrouridine synthase, DuS; n=3;
Proteobacteria|Rep: Dihydrouridine synthase, DuS -
Polaromonas sp. (strain JS666 / ATCC BAA-500)
Length = 344
Score = 37.1 bits (82), Expect = 0.43
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 325 LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTL--V 498
LG+ A A+L A ID+N GCP + G G +LL +P+ I+ +
Sbjct: 76 LGSDPACMAENAARLATLGPAGIDLNFGCPAAVVNRHGGGASLLKEPETLLAIVSAVRRA 135
Query: 499 DNLSIPVTCKIRI 537
+PV+ K+R+
Sbjct: 136 VPAGMPVSAKMRL 148
>UniRef50_Q47741 Cluster: Dihydroorotate dehydrogenase B, catalytic
subunit; n=104; Bacteria|Rep: Dihydroorotate
dehydrogenase B, catalytic subunit - Enterococcus
faecalis (Streptococcus faecalis)
Length = 312
Score = 37.1 bits (82), Expect = 0.43
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +1
Query: 328 GTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDN 504
G C+E AK+ + +V AI++N+ CP ++K G G+A + P+ A+Q+ + +
Sbjct: 105 GACEEDYVAVCAKIGQAPNVKAIELNISCP---NVKHG-GIAFGTDPEVAFQLTQAVKKV 160
Query: 505 LSIPVTCKI 531
S+P+ K+
Sbjct: 161 ASVPIYVKL 169
>UniRef50_O53835 Cluster: Probable tRNA-dihydrouridine synthase;
n=35; Actinobacteria (class)|Rep: Probable
tRNA-dihydrouridine synthase - Mycobacterium
tuberculosis
Length = 389
Score = 37.1 bits (82), Expect = 0.43
Identities = 31/93 (33%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Frame = +1
Query: 274 TIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFSIKGGMGV 447
T+ T ++ LQL T D A+++ + A ID+N GCP K G G
Sbjct: 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132
Query: 448 ALLSKPDKAYQILKTLV---DNLSIPVTCKIRI 537
AL K QI+ V + IPVT K RI
Sbjct: 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRI 165
>UniRef50_Q6AKJ6 Cluster: Putative uncharacterized protein; n=1;
Desulfotalea psychrophila|Rep: Putative uncharacterized
protein - Desulfotalea psychrophila
Length = 354
Score = 36.7 bits (81), Expect = 0.57
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 391 IDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
+DIN+GCP +GG G AL D+ I+ + + + ++ KIR+
Sbjct: 127 VDINLGCPAPSVRRGGAGAALAEDWDRVRDIVSSARRHTDLTLSAKIRV 175
>UniRef50_Q1F0W8 Cluster: Dihydroorotate dehydrogenase 1; n=1;
Clostridium oremlandii OhILAs|Rep: Dihydroorotate
dehydrogenase 1 - Clostridium oremlandii OhILAs
Length = 372
Score = 36.7 bits (81), Expect = 0.57
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +1
Query: 325 LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDN 504
LG A K+ + A+++ + CP ++G ++S+P K Y+ K +VD
Sbjct: 98 LGHTSSEIAYIAQKVEQFGADAVELGVSCPHGEGLEG-----VISEPSKLYEFTKAVVDR 152
Query: 505 LSIPVTCKI 531
+ IPV K+
Sbjct: 153 IKIPVMVKL 161
>UniRef50_A6NW05 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 307
Score = 36.7 bits (81), Expect = 0.57
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 334 CDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNL-S 510
C E A ++ D+ IDINMGCP G G L+ DKA ++ + +V
Sbjct: 62 CMEEAAAIAGEVSGADI--IDINMGCPVPKVANSGDGSGLMRDVDKAVRVAEAVVRGAGE 119
Query: 511 IPVTCKIRI 537
PVT K R+
Sbjct: 120 RPVTVKFRL 128
>UniRef50_A4BCJ5 Cluster: NifR3/Smm1 family protein; n=2;
Gammaproteobacteria|Rep: NifR3/Smm1 family protein -
Reinekea sp. MED297
Length = 314
Score = 36.7 bits (81), Expect = 0.57
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +1
Query: 325 LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDN 504
LG+ +A A + +E +D+N GCP + G LL++P+ Y +++++ D
Sbjct: 70 LGSHPQALAENALRAIELGSHGLDLNFGCPSKTVNASKGGAVLLTEPESIYAVVRSVRDA 129
Query: 505 L 507
L
Sbjct: 130 L 130
>UniRef50_A4AAB0 Cluster: TRNA-dihydrouridine synthase C; n=2;
unclassified Gammaproteobacteria|Rep:
TRNA-dihydrouridine synthase C - Congregibacter
litoralis KT71
Length = 328
Score = 36.7 bits (81), Expect = 0.57
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +1
Query: 292 CEEEKKKVVLQ-LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPD 468
C V LQ LG A ++ E +D+N GCP + + G +L +P+
Sbjct: 64 CTSSGVPVYLQILGGDPSVVAENASRAAELGAPGVDLNFGCPAKTVNRSDGGSIILREPE 123
Query: 469 KAYQILKTLVDNL--SIPVTCKIRI 537
+ ++I+ L S+P++ KIR+
Sbjct: 124 RVHRIVAATRQALPPSVPLSVKIRL 148
>UniRef50_A6RW05 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 278
Score = 36.7 bits (81), Expect = 0.57
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 316 VLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILK 489
+ Q G C + L+ V +DIN GCP+ ++ +G AL+ K + +++K
Sbjct: 38 IAQFGVCSPLEISRSTTLLAPYVNGVDINCGCPQSWACACSIGAALMHKRELVAEMVK 95
>UniRef50_Q4S086 Cluster: Chromosome undetermined SCAF14784, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF14784,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 505
Score = 36.3 bits (80), Expect = 0.76
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Frame = +1
Query: 115 MVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKR-RFNDILNTVDYVDQTDGTIVFRT 291
MV L RLL+ ++GA + YT F+R R +++ N V
Sbjct: 1 MVDQSELAWRLLSRRHGAQLCYTPMFHAQVFVRDANYRRDNLYNEV-------------- 46
Query: 292 CEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVAL 453
CEE++ ++ Q D ++ A L + AID+N+GCP+ + +G G L
Sbjct: 47 CEEDRP-LITQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFL 99
>UniRef50_Q47C15 Cluster: Dihydrouridine synthase, DuS; n=2;
Betaproteobacteria|Rep: Dihydrouridine synthase, DuS -
Dechloromonas aromatica (strain RCB)
Length = 319
Score = 36.3 bits (80), Expect = 0.76
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 325 LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTL--V 498
LG+ A +LV + A +D+N GCP + G ALL +P+ +I + V
Sbjct: 71 LGSDPHFMAENARRLVALNPAGVDLNFGCPAPTVFRHRGGSALLGEPELLNEITSAVRSV 130
Query: 499 DNLSIPVTCKIRI 537
IP T K+R+
Sbjct: 131 VPAHIPFTAKMRL 143
>UniRef50_O67533 Cluster: Probable tRNA-dihydrouridine synthase;
n=1; Aquifex aeolicus|Rep: Probable tRNA-dihydrouridine
synthase - Aquifex aeolicus
Length = 316
Score = 36.3 bits (80), Expect = 0.76
Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 4/156 (2%)
Frame = +1
Query: 82 MNYEN-KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 258
MN++ ++ILAPM R L + GAD YTE + LR N I + Y
Sbjct: 1 MNFKKGEVILAPMASYTHSAFRRLCRRLGADRTYTELISAVGVLR-----NGIPMKLAYF 55
Query: 259 DQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGG 438
+ + I + +++ ++ +AK ++ D IDIN GC ++
Sbjct: 56 TEEERPIHIQVFGSNPEEIA--------QASVVIAKELKPDF--IDINFGCSVPKVLRNK 105
Query: 439 MGVALLSKPDKAYQILKTLVDNL---SIPVTCKIRI 537
+L P +++K V+ L IPV+ KIR+
Sbjct: 106 AAGYMLQCPPLMGEVVKETVEALKPYGIPVSAKIRL 141
>UniRef50_O51679 Cluster: Histidine phosphokinase/phophatase,
putative; n=3; Borrelia burgdorferi group|Rep: Histidine
phosphokinase/phophatase, putative - Borrelia
burgdorferi (Lyme disease spirochete)
Length = 335
Score = 35.9 bits (79), Expect = 1.00
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +1
Query: 391 IDINMGCPKEFSIKGGMGVALLSKPDKAYQIL---KTLVDNLSIPVTCKIR 534
IDINMGCPK IK G+ AL++ A +I+ K ++P++ K R
Sbjct: 107 IDINMGCPKSKIIKKGVCSALINNKSLAKEIILASKEACARFNLPLSVKTR 157
>UniRef50_A5EXU5 Cluster: TRNA-dihydrouridine synthase A; n=1;
Dichelobacter nodosus VCS1703A|Rep: TRNA-dihydrouridine
synthase A - Dichelobacter nodosus (strain VCS1703A)
Length = 335
Score = 35.9 bits (79), Expect = 1.00
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Frame = +1
Query: 265 TDGTIVFRTCE-----EEKKKVVLQLGTC--DE-ARALKVAKLVEHDVAAIDINMGCPKE 420
T G I+F + + + LQLG DE ARA +A+ + A +++N+GCP +
Sbjct: 41 TTGAILFGDAQRYLTHQNDEPCALQLGGSNPDELARATAIAQ--SYHYAEMNLNVGCPSD 98
Query: 421 FSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
+G L+ P Q L + +PV+ K R+
Sbjct: 99 RVQNNQIGACLMKSPRLVAQCLTAMQKESDVPVSIKHRL 137
>UniRef50_Q9RDC6 Cluster: Putative uncharacterized protein SCO2497;
n=5; Bacteria|Rep: Putative uncharacterized protein
SCO2497 - Streptomyces coelicolor
Length = 406
Score = 35.5 bits (78), Expect = 1.3
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 4/149 (2%)
Frame = +1
Query: 100 IILAPMVRIGTLPMRLLALKY-GADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 276
++LAPM I P R L ++ G ++ E+I + L V+ ++T
Sbjct: 27 VVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTRAL------------VERNEKTMQL 74
Query: 277 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFSIKGGMGVA 450
I F E + +QL D K +++ + A ID+N GCP + G G A
Sbjct: 75 IHFDATETPRS---IQLYGVDPVTVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSA 131
Query: 451 LLSKPDKAYQILKTLVDNL-SIPVTCKIR 534
L K I++ V +PVT K+R
Sbjct: 132 LPYKRHLLRAIVREAVTGAGDLPVTMKMR 160
>UniRef50_Q97DM0 Cluster: Predicted TIM-barrel enzyme, nifR3 family;
n=17; Clostridiales|Rep: Predicted TIM-barrel enzyme,
nifR3 family - Clostridium acetobutylicum
Length = 311
Score = 35.5 bits (78), Expect = 1.3
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +1
Query: 364 KLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILK 543
KL+ + +++N+GCP + G G L K + + L+ + ++ K RI K
Sbjct: 79 KLMNLGYSEVNLNLGCPSGTVVSKGRGAGFLKKRQELDEFLEKIFSKSPAKISIKTRIGK 138
Query: 544 -TPEATLELVNKLITYQFQ 597
+P+ EL+ Y +
Sbjct: 139 DSPDEFYELIKIFNKYPLE 157
>UniRef50_A7DKP5 Cluster: Dihydrouridine synthase, DuS; n=2;
Methylobacterium extorquens PA1|Rep: Dihydrouridine
synthase, DuS - Methylobacterium extorquens PA1
Length = 354
Score = 35.5 bits (78), Expect = 1.3
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +1
Query: 337 DEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIP 516
D A A ++A + A I++N+GCP + G G L+ +P + L + +P
Sbjct: 95 DLAAAARIA--ADFGYAEINLNVGCPSDRVQDGRFGACLMREPGLVGACVAALKAAVPVP 152
Query: 517 VTCKIRI 537
VT K R+
Sbjct: 153 VTVKCRL 159
>UniRef50_A1VHK2 Cluster: Dihydrouridine synthase, DuS; n=4;
Desulfovibrionaceae|Rep: Dihydrouridine synthase, DuS -
Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
Length = 449
Score = 35.5 bits (78), Expect = 1.3
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 1/132 (0%)
Frame = +1
Query: 106 LAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVF 285
LAP+ L RLL K GA + TE +++ + + GT
Sbjct: 36 LAPLAGYSDLSFRLLCRKAGAAVCCTE----------------MVSAKGLIYYSPGTRDL 79
Query: 286 RTCEEEKKKVVLQLGTCDEARALKVAK-LVEHDVAAIDINMGCPKEFSIKGGMGVALLSK 462
E +V+QL CD ++ + L+E D+NMGC +K G G A+L
Sbjct: 80 LATTPEDAPLVVQLFGCDPDIMVRAMEPLLEQGFRWFDLNMGCSVPKVVKTGCGAAMLRD 139
Query: 463 PDKAYQILKTLV 498
+A + + ++
Sbjct: 140 VPQALAVARAML 151
>UniRef50_Q8G660 Cluster: Dihydroorotate dehydrogenase; n=4;
Bifidobacterium|Rep: Dihydroorotate dehydrogenase -
Bifidobacterium longum
Length = 323
Score = 35.1 bits (77), Expect = 1.7
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +1
Query: 328 GTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNL 507
G CD+ A V KL + D ++IN+ CP + GGM V + P L L+D L
Sbjct: 122 GHCDDDYAAVVEKLADSDADMLEINVSCPNVSA--GGMSVG--TDP----VALANLMDRL 173
Query: 508 SIPVTCKIRILK-TPEAT 558
P+T K I+K TP T
Sbjct: 174 R-PMTDKPMIVKLTPNVT 190
>UniRef50_A6DCX2 Cluster: tRNA-dihydrouridine synthase B; n=1;
Caminibacter mediatlanticus TB-2|Rep:
tRNA-dihydrouridine synthase B - Caminibacter
mediatlanticus TB-2
Length = 311
Score = 35.1 bits (77), Expect = 1.7
Identities = 31/148 (20%), Positives = 68/148 (45%), Gaps = 4/148 (2%)
Frame = +1
Query: 106 LAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVF 285
LAP+ LP R + ++G D+ ++E +I+ N + + ++ ++
Sbjct: 15 LAPLAGYTDLPFRSVVKEFGCDMTFSE-MIN-------------ANAIAFNNEKTKKMMQ 60
Query: 286 RTCEEEKKKVVLQLGTCDEARALKVAKLVEHD--VAAIDINMGCPKEFSIKGGMGVALL- 456
++ +E +Q+ + A+K +++ + IDIN+GCP + + G G LL
Sbjct: 61 KSSKETP--YFIQIAANNVENAIKAVEIINEIPWIDGIDINLGCPVNKARRSGYGGVLLK 118
Query: 457 -SKPDKAYQILKTLVDNLSIPVTCKIRI 537
+K +I+ ++ V+ K+R+
Sbjct: 119 DENKEKLKEIVSAIIKTSKKIVSAKMRL 146
>UniRef50_Q7SGX4 Cluster: Putative uncharacterized protein
NCU03195.1; n=1; Neurospora crassa|Rep: Putative
uncharacterized protein NCU03195.1 - Neurospora crassa
Length = 341
Score = 35.1 bits (77), Expect = 1.7
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 316 VLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSK 462
V+Q G D + + LV +D+N GCP+ ++ +G AL+ K
Sbjct: 35 VVQFGANDPQELARASTLVAPYAGGVDLNCGCPQSWACAETLGAALMEK 83
>UniRef50_A6RVN2 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 1174
Score = 35.1 bits (77), Expect = 1.7
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +1
Query: 478 QILKTLVDNLSIPVTCKIRILKTPEATLELVNKLIT 585
+++ TL L +PVT KIRIL T E TL+ +I+
Sbjct: 783 ELINTLHKELDVPVTAKIRILDTREKTLDYAKMVIS 818
>UniRef50_A4RL93 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 313
Score = 35.1 bits (77), Expect = 1.7
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +1
Query: 289 TCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSK 462
T + + ++Q G + + LV VA +D+N GCP+ ++ +G AL+ +
Sbjct: 34 TTPQPQPPTIVQFGANVPVELARASSLVAPFVAGVDLNCGCPQSWACAETLGAALMER 91
>UniRef50_Q1JWD3 Cluster: Dihydrouridine synthase, DuS; n=1;
Desulfuromonas acetoxidans DSM 684|Rep: Dihydrouridine
synthase, DuS - Desulfuromonas acetoxidans DSM 684
Length = 320
Score = 34.7 bits (76), Expect = 2.3
Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 2/159 (1%)
Frame = +1
Query: 100 IILAPMVRIGTLPMRLLALKYGA-DIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 276
++LAPM + MR + G D+V+TE + R + ND + VD
Sbjct: 13 LMLAPMQGLTNRAMRAVQCDIGQPDVVFTEFVRVSHVARQRITPNDRREILAGVDDVP-- 70
Query: 277 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 456
VV +G E+ A + + A +++NMGCP + G G A+L
Sbjct: 71 -----------LVVQLIGHRSESLAEAAQIVADLGGAHVNLNMGCPFGRTTTGKTGGAML 119
Query: 457 SKPDKAYQILKTLVDNLSIPVTCKIRI-LKTPEATLELV 570
+P+K L+ + V+ K+R PE +L+
Sbjct: 120 QEPEKIGDCLRAIRAAFHGSVSVKVRAGYDDPEQIFDLL 158
>UniRef50_A7AAN4 Cluster: Putative uncharacterized protein; n=2;
Bacteroidales|Rep: Putative uncharacterized protein -
Parabacteroides merdae ATCC 43184
Length = 320
Score = 34.7 bits (76), Expect = 2.3
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 394 DINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI 537
DIN+GCP + G +L PD+ +L+T+ + I + K+R+
Sbjct: 92 DINLGCPFPMQARQHRGAGILPYPDEVKVLLETIFEFPEIQFSVKLRL 139
>UniRef50_A1RZC9 Cluster: Dihydroorotate dehydrogenase family
protein; n=1; Thermofilum pendens Hrk 5|Rep:
Dihydroorotate dehydrogenase family protein -
Thermofilum pendens (strain Hrk 5)
Length = 299
Score = 34.7 bits (76), Expect = 2.3
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +1
Query: 313 VVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKT 492
V+ +G AL++A+ +E A+++N CP +KG +G L+S PD Y I+
Sbjct: 96 VIASIGASTPDEALRIAEALE-GFDALELNASCPH---VKG-LGADLMSDPDAVYGIVSA 150
Query: 493 L 495
L
Sbjct: 151 L 151
>UniRef50_Q979G6 Cluster: Dihydroorotate dehydrogenase; n=4;
Thermoplasmatales|Rep: Dihydroorotate dehydrogenase -
Thermoplasma volcanium
Length = 301
Score = 34.7 bits (76), Expect = 2.3
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +1
Query: 295 EEEKKKVVLQLGTCDEARALKVA-KLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDK 471
+E K+ ++ + + K++ K+ E+ V AI++N+ CP +KG G+ + S PD
Sbjct: 89 KEAKRPIIGSVFAYNAEEFTKLSVKMEEYGVDAIELNLSCPH---VKG-FGLEVGSDPDL 144
Query: 472 AYQILKTLVDNLSIPVTCKI 531
I+ + + +PV K+
Sbjct: 145 VEDIVNEIKSKVKVPVFAKL 164
>UniRef50_UPI0000F1F64B Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 1509
Score = 34.3 bits (75), Expect = 3.0
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +1
Query: 160 YGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVFRTCEEEKKKVVLQLGTCD 339
+ ++ Y +E + W L K FN+ +NT+ +VD+T + E+ KV +
Sbjct: 204 FTCEVNYADEEVQWT-LNDKPLFNNEVNTITHVDKTHTLSLKNLAPEDGGKVSFSIRDVK 262
Query: 340 EARALKV 360
E LKV
Sbjct: 263 ETVCLKV 269
>UniRef50_A3RPJ2 Cluster: TRNA-dihydrouridine synthase; n=2;
Proteobacteria|Rep: TRNA-dihydrouridine synthase -
Ralstonia solanacearum UW551
Length = 369
Score = 34.3 bits (75), Expect = 3.0
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Frame = +1
Query: 292 CEEEKKKVVLQLGTCDEA-RALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPD 468
C +V+QL D A A+ ID+N GCP + + G G LLS P+
Sbjct: 102 CTASGTPMVIQLLGSDPVWLARNAAQAATISPHGIDLNFGCPAKVVNRHGGGAMLLSTPE 161
Query: 469 KAYQILKTL--VDNLSIPVTCKIRI 537
+ I+ + +I VT K+R+
Sbjct: 162 LLHTIVSAVRAAVPANIAVTAKMRL 186
>UniRef50_Q9VIS4 Cluster: CG10463-PA; n=3; Sophophora|Rep:
CG10463-PA - Drosophila melanogaster (Fruit fly)
Length = 604
Score = 34.3 bits (75), Expect = 3.0
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTE 186
+++ K++L+P+ +G LP R + ++GADI E
Sbjct: 253 VDFREKLVLSPLTTLGNLPFRRICKEFGADITCGE 287
>UniRef50_Q7PVV7 Cluster: ENSANGP00000016833; n=2;
Endopterygota|Rep: ENSANGP00000016833 - Anopheles
gambiae str. PEST
Length = 594
Score = 34.3 bits (75), Expect = 3.0
Identities = 34/141 (24%), Positives = 56/141 (39%)
Frame = +1
Query: 88 YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQT 267
+ +K+ L+P+ +G LP R + +YG DI E + + T + +
Sbjct: 243 FRDKLYLSPLTTVGNLPFRRICKEYGVDITCGEMACAIPIING--AIQEWALTKRH--SS 298
Query: 268 DGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGV 447
+ + C K V E + DV ID+N GCP + G G
Sbjct: 299 EDLFGVQLCGHNPKLVTYAAQIIAE----------KADVDFIDLNTGCPIDLIFNQGGGS 348
Query: 448 ALLSKPDKAYQILKTLVDNLS 510
ALL + + +LK +V + S
Sbjct: 349 ALLRRQN----VLKVMVQSCS 365
>UniRef50_Q23WS6 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 2973
Score = 34.3 bits (75), Expect = 3.0
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +1
Query: 412 PKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLITYQ 591
PKE I + KP+KA ++ L N P K I++TP +LE+ N+L
Sbjct: 648 PKEKLISDFFPYVMEHKPEKAIEVFAVLDPNKYPPSQIKQLIIQTPNISLEVRNQLTGIY 707
Query: 592 FQ 597
F+
Sbjct: 708 FE 709
>UniRef50_O75864 Cluster: R32611_1; n=20; Euteleostomi|Rep: R32611_1
- Homo sapiens (Human)
Length = 540
Score = 34.3 bits (75), Expect = 3.0
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 12/136 (8%)
Frame = +1
Query: 202 KFLRSKRRFNDILNTVDYVDQTDGTIVFRTCE--EEK------KKVVLQLGTCDEARALK 357
K LR + F D+ + +D +D + ++TCE EE K V L+ DE A
Sbjct: 26 KLLRQLQEFTDLGHRLDCLDLKGEKLDYKTCEALEEVFKRLQFKVVDLEQTNLDEDGASA 85
Query: 358 VAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKT----LVDNLSIPVTC 525
+ ++E+ +A +N+ K +G A + + Q L L+D+ S P
Sbjct: 86 LFDMIEYYESATHLNISFNKHIGTRGWQAAAHMMRKTSCLQYLDARNTPLLDH-SAPFVA 144
Query: 526 KIRILKTPEATLELVN 573
+ +++ A L L N
Sbjct: 145 RALRIRSSLAVLHLEN 160
>UniRef50_Q6D9Y3 Cluster: Enterobactin synthetase component F; n=4;
Gammaproteobacteria|Rep: Enterobactin synthetase
component F - Erwinia carotovora subsp. atroseptica
(Pectobacterium atrosepticum)
Length = 1047
Score = 33.9 bits (74), Expect = 4.0
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 130 TLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVFRTCE 297
T+P L A+ G + VY E+L+ W +R D L ++ T+ T+V +C+
Sbjct: 716 TMPSALRAIIIGGEAVYPEQLVQW-----QRHAPDTLRLINTYGPTETTVVATSCD 766
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 678,035,032
Number of Sequences: 1657284
Number of extensions: 12985697
Number of successful extensions: 30345
Number of sequences better than 10.0: 264
Number of HSP's better than 10.0 without gapping: 29263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30266
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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