Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c11
         (718 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0D5M6 Cluster: Chromosome undetermined scaffold_39, wh...    36   1.3  
UniRef50_Q1Q4K1 Cluster: Putative uncharacterized protein; n=1; ...    34   4.0  
UniRef50_O74563 Cluster: E3 ubiquitin-protein ligase bre1; n=1; ...    33   9.3  

>UniRef50_A0D5M6 Cluster: Chromosome undetermined scaffold_39, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_39,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 781

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 66  FASIFVINWLLHITKNVQYLFYNIILLSIQTTDTDRLFIQLQILWYRGRNEGL 224
           +  I  + W L ITK +  +  N  ++SI   D   +FIQ+ IL Y   N  L
Sbjct: 73  YDKIIELKWSLRITKEINKIIQNNQVVSIYLQDCLEIFIQIDILKYEEINNSL 125


>UniRef50_Q1Q4K1 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Kuenenia stuttgartiensis|Rep: Putative
           uncharacterized protein - Candidatus Kuenenia
           stuttgartiensis
          Length = 340

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +1

Query: 157 LQIQTDYSYNYRFYGIGEGMK 219
           L+ QTDYSY YRF+  GE +K
Sbjct: 7   LKTQTDYSYKYRFFSFGEYLK 27


>UniRef50_O74563 Cluster: E3 ubiquitin-protein ligase bre1; n=1;
           Schizosaccharomyces pombe|Rep: E3 ubiquitin-protein
           ligase bre1 - Schizosaccharomyces pombe (Fission yeast)
          Length = 680

 Score = 32.7 bits (71), Expect = 9.3
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 590 IQKLEKLNVISDERKNNRTMTTISVQKILETVLSITN 700
           ++K  +L+  +D  KNN+T     +QK+L TV S TN
Sbjct: 104 LEKFPELSYFNDAVKNNKTKALSIIQKLLSTVDSSTN 140


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,577,515
Number of Sequences: 1657284
Number of extensions: 9893485
Number of successful extensions: 18570
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18562
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)