Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10d07
         (360 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2; ...    79   2e-14
UniRef50_A5K998 Cluster: Putative uncharacterized protein; n=1; ...    33   1.5  
UniRef50_Q0UVC6 Cluster: Putative uncharacterized protein; n=1; ...    33   1.5  
UniRef50_A4J380 Cluster: YD repeat protein; n=1; Desulfotomaculu...    32   3.5  
UniRef50_Q0IBD7 Cluster: Phosphatidate cytidylyltransferase; n=2...    31   8.0  
UniRef50_A4XRA4 Cluster: Drug resistance transporter, Bcr/CflA s...    31   8.0  
UniRef50_Q3IP42 Cluster: Putative uncharacterized protein; n=1; ...    31   8.0  

>UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2;
           Bombycoidea|Rep: Putative uncharacterized protein -
           Lonomia obliqua (Moth)
          Length = 74

 Score = 79.0 bits (186), Expect = 2e-14
 Identities = 39/74 (52%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
 Frame = +1

Query: 43  MGFFTALIVNIVGGAVLC-MGGFLIPIVAPLLGFXXXXXXXXXXXXXXXXYYGNLMAGSI 219
           MG   AL VN+VGGA++   GG L PIVAP+LGF                YYGN++AGS+
Sbjct: 1   MGLLAALAVNLVGGAIIYGTGGLLTPIVAPMLGFGSAGIAAGSTAAAAQAYYGNVVAGSV 60

Query: 220 ISKLTAAAMIAPTP 261
           IS+LT+AAM+APTP
Sbjct: 61  ISQLTSAAMLAPTP 74


>UniRef50_A5K998 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 665

 Score = 33.1 bits (72), Expect = 1.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 198 EFNGRKHYIKVDCRRHDSTNSISLSKTDNC 287
           EFNGR HY+ V  +  DST+++  +   NC
Sbjct: 593 EFNGRTHYVLVLSKGGDSTDAVHYTMRQNC 622


>UniRef50_Q0UVC6 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 887

 Score = 33.1 bits (72), Expect = 1.5
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -2

Query: 137 PSRGATIGIKNP-PMQRTAPPTMLTIRAV-KNPMILKSQ*LLT 15
           PS GA    ++P P    AP    T+R V KNP +LKS  LLT
Sbjct: 739 PSNGAAFAPRSPSPSPAPAPSLTATVRFVSKNPTLLKSSYLLT 781


>UniRef50_A4J380 Cluster: YD repeat protein; n=1; Desulfotomaculum
            reducens MI-1|Rep: YD repeat protein - Desulfotomaculum
            reducens MI-1
          Length = 2558

 Score = 31.9 bits (69), Expect = 3.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 40   IMGFFTALIVNIVGGAVLCMGGFLIPIVAPLLG 138
            + G  TAL V ++GGA +  G +  P+VA L G
Sbjct: 2255 LYGGLTALAVGLIGGAAVGTGDYASPVVAALAG 2287


>UniRef50_Q0IBD7 Cluster: Phosphatidate cytidylyltransferase; n=20;
           Cyanobacteria|Rep: Phosphatidate cytidylyltransferase -
           Synechococcus sp. (strain CC9311)
          Length = 306

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 185 WAEAAMLPAIIPDALKPSRGATI 117
           WA +  LPA++PDA+ P  GA I
Sbjct: 87  WANSGGLPALLPDAVLPLSGAAI 109


>UniRef50_A4XRA4 Cluster: Drug resistance transporter, Bcr/CflA
           subfamily precursor; n=1; Pseudomonas mendocina ymp|Rep:
           Drug resistance transporter, Bcr/CflA subfamily
           precursor - Pseudomonas mendocina ymp
          Length = 399

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 13/35 (37%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = +1

Query: 34  LRIMGFFTALIVN-IVGGAVLCMGGFLIPIVAPLL 135
           L ++G FTA++++ ++GG +   GG+  P+VA L+
Sbjct: 133 LTVLGMFTAIVLSPLLGGLLTQYGGWRAPLVASLV 167


>UniRef50_Q3IP42 Cluster: Putative uncharacterized protein; n=1;
           Natronomonas pharaonis DSM 2160|Rep: Putative
           uncharacterized protein - Natronomonas pharaonis (strain
           DSM 2160 / ATCC 35678)
          Length = 586

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 1   GIVYLVRSYCDLRIMGFFTALIVNIVGGAVLCMGG 105
           G+V+ VR   +L  +G+   +   +VGG VL  GG
Sbjct: 93  GVVFFVRLAIELGWLGYLGRVAAGVVGGGVLFFGG 127


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 386,874,896
Number of Sequences: 1657284
Number of extensions: 7546679
Number of successful extensions: 17326
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17320
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 12367962079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)