Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0092
         (373 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3LY11 Cluster: Predicted protein; n=1; Pichia stipitis...    31   6.7  
UniRef50_Q9D683 Cluster: 0 day neonate skin cDNA, RIKEN full-len...    31   8.8  

>UniRef50_A3LY11 Cluster: Predicted protein; n=1; Pichia
           stipitis|Rep: Predicted protein - Pichia stipitis
           (Yeast)
          Length = 248

 Score = 31.1 bits (67), Expect = 6.7
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -2

Query: 273 HHFLNTTAGSEPNI---H*EEPARNSVDICRMTLILHLSELNYNISFEV*SRLLKIKFY 106
           H F N     EPN+   H E P +  +D  +  LI H +  N+ I+ EV   L  ++FY
Sbjct: 6   HQFPNNDRNFEPNMPSKH-ESPRKKHIDHTKEDLI-HKNRSNFEITVEVKDELSYLRFY 62


>UniRef50_Q9D683 Cluster: 0 day neonate skin cDNA, RIKEN full-length
           enriched library, clone:4632404H12 product:hypothetical
           protein, full insert sequence; n=1; Mus musculus|Rep: 0
           day neonate skin cDNA, RIKEN full-length enriched
           library, clone:4632404H12 product:hypothetical protein,
           full insert sequence - Mus musculus (Mouse)
          Length = 128

 Score = 30.7 bits (66), Expect = 8.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 200 STEFLAGSSQWMLGSEPAVVFKKWCASVRVKSDNNKNQLK 319
           S  ++  S  W+  S P + F  WC S + +SD  K ++K
Sbjct: 14  SHPWICPSFSWIHLSNPFMRFAAWCDSYKPRSDEEKGRIK 53


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 280,586,264
Number of Sequences: 1657284
Number of extensions: 4022699
Number of successful extensions: 6280
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6280
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 13594373344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)