Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120059.Seq
(729 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 146 6e-34
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 144 3e-33
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 129 8e-29
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 126 3e-28
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 118 2e-25
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 111 2e-23
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 111 2e-23
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 109 9e-23
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 107 3e-22
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 101 1e-20
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 94 3e-18
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 76 1e-12
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 63 8e-09
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 62 1e-08
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 59 1e-07
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 58 2e-07
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 54 3e-06
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 54 3e-06
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 50 6e-05
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 49 1e-04
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 47 4e-04
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 46 7e-04
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 44 0.003
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 44 0.003
UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1; ... 44 0.005
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 43 0.009
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 43 0.009
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 42 0.015
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 42 0.020
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 41 0.036
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 40 0.062
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 40 0.062
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 38 0.33
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 37 0.44
UniRef50_UPI0000E814A8 Cluster: PREDICTED: similar to MEGF6; n=1... 34 3.1
UniRef50_A7CME0 Cluster: Putative uncharacterized protein precur... 34 3.1
UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tu... 34 4.1
UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1; ... 34 4.1
UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1; ... 34 4.1
UniRef50_Q0J8P0 Cluster: Os08g0101500 protein; n=1; Oryza sativa... 34 4.1
UniRef50_A6QCB1 Cluster: TonB-dependent copper receptor; n=1; Su... 33 7.2
UniRef50_A4X7G0 Cluster: Putative uncharacterized protein; n=1; ... 33 9.5
UniRef50_A2DLM0 Cluster: Ser/Thr protein phosphatase, putative; ... 33 9.5
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 146 bits (353), Expect = 6e-34
Identities = 63/86 (73%), Positives = 75/86 (87%)
Frame = +3
Query: 255 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 434
AGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTHD
Sbjct: 84 AGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHD 143
Query: 435 GRTIRYPDPLIKVNDSIQLDIATTKL 512
RTIRYPDPLIKVND+IQ+D+ T K+
Sbjct: 144 ARTIRYPDPLIKVNDTIQIDLETGKI 169
Score = 126 bits (305), Expect = 4e-28
Identities = 51/74 (68%), Positives = 67/74 (90%)
Frame = +2
Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685
+I DFIKF++GNLCM+TGG NLGR+G I +RERHPGSFD+VH+KD+ G++FAT+L+N+F+
Sbjct: 168 KITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFV 227
Query: 686 IGKGTKAYISLPRG 727
IGKG K +ISLPRG
Sbjct: 228 IGKGNKPWISLPRG 241
Score = 120 bits (289), Expect = 4e-26
Identities = 54/64 (84%), Positives = 59/64 (92%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 188 S*KL 199
K+
Sbjct: 61 VKKI 64
Score = 37.5 bits (83), Expect = 0.33
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +1
Query: 187 ILKIVKQRLIKVDGKVRTDPTYP 255
+ KI QR IK+DGKVRTD TYP
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYP 83
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 144 bits (348), Expect = 3e-33
Identities = 63/90 (70%), Positives = 75/90 (83%)
Frame = +3
Query: 243 PYLSAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 422
P AG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+L
Sbjct: 80 PTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFL 139
Query: 423 VTHDGRTIRYPDPLIKVNDSIQLDIATTKL 512
VTHDGRTIRYPDPLI NDS+Q+DIA+ K+
Sbjct: 140 VTHDGRTIRYPDPLIHANDSVQVDIASGKI 169
Score = 138 bits (334), Expect = 1e-31
Identities = 61/74 (82%), Positives = 68/74 (91%)
Frame = +2
Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685
+I D+IKF+SGNLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FAT+L NVFI
Sbjct: 168 KITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFI 227
Query: 686 IGKGTKAYISLPRG 727
IGKG K YISLP+G
Sbjct: 228 IGKGNKPYISLPKG 241
Score = 119 bits (286), Expect = 8e-26
Identities = 55/64 (85%), Positives = 58/64 (90%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60
Query: 188 S*KL 199
K+
Sbjct: 61 VTKI 64
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = +1
Query: 187 ILKIVKQRLIKVDGKVRTDPTYP 255
+ KIV QRL+KVDGKVRTDPTYP
Sbjct: 61 VTKIVMQRLVKVDGKVRTDPTYP 83
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 129 bits (311), Expect = 8e-29
Identities = 58/86 (67%), Positives = 69/86 (80%)
Frame = +3
Query: 255 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 434
AGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+D
Sbjct: 84 AGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYD 143
Query: 435 GRTIRYPDPLIKVNDSIQLDIATTKL 512
GRTIRYPDPLIK ND+I+LD+ K+
Sbjct: 144 GRTIRYPDPLIKPNDTIKLDLEENKI 169
Score = 112 bits (270), Expect = 7e-24
Identities = 47/74 (63%), Positives = 63/74 (85%)
Frame = +2
Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685
+I++FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FAT+L NV+
Sbjct: 168 KIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYT 227
Query: 686 IGKGTKAYISLPRG 727
IGKGTK ++SLP+G
Sbjct: 228 IGKGTKPWVSLPKG 241
Score = 109 bits (261), Expect = 9e-23
Identities = 48/60 (80%), Positives = 53/60 (88%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Score = 37.1 bits (82), Expect = 0.44
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +1
Query: 181 KRILKIVKQRLIKVDGKVRTDPTYP 255
+ ++ I+ QR I+VDGKVRTD TYP
Sbjct: 59 REVISILMQRHIQVDGKVRTDKTYP 83
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 126 bits (304), Expect = 6e-28
Identities = 50/74 (67%), Positives = 67/74 (90%)
Frame = +2
Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685
+I DFIKF++ N+CM+TGG NLGR+G I +RERHPGSFD+VH+KDSTG++FAT+L+N+F+
Sbjct: 200 KITDFIKFDTSNMCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFV 259
Query: 686 IGKGTKAYISLPRG 727
IGKG K ++SLPRG
Sbjct: 260 IGKGNKPWVSLPRG 273
Score = 118 bits (284), Expect = 1e-25
Identities = 53/63 (84%), Positives = 58/63 (92%)
Frame = +2
Query: 11 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 190
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 191 *KL 199
K+
Sbjct: 62 KKI 64
Score = 80.6 bits (190), Expect(2) = 3e-28
Identities = 32/50 (64%), Positives = 43/50 (86%)
Frame = +3
Query: 363 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKL 512
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T K+
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKI 201
Score = 67.7 bits (158), Expect(2) = 3e-28
Identities = 30/36 (83%), Positives = 33/36 (91%)
Frame = +3
Query: 258 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 365
GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 85 GFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 37.5 bits (83), Expect = 0.33
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +1
Query: 187 ILKIVKQRLIKVDGKVRTDPTYP 255
+ KI QR IK+DGKVRTD TYP
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYP 83
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 118 bits (283), Expect = 2e-25
Identities = 47/74 (63%), Positives = 63/74 (85%)
Frame = +2
Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685
+I DF KF++GNLCM+TGG NLGR+G I +RE HPGSFD+VH+KD+ G++FAT+L+N+F+
Sbjct: 140 KITDFFKFDTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLSNIFV 199
Query: 686 IGKGTKAYISLPRG 727
IGKG +ISLP G
Sbjct: 200 IGKGNIPWISLPHG 213
Score = 110 bits (265), Expect = 3e-23
Identities = 49/64 (76%), Positives = 55/64 (85%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 188 S*KL 199
K+
Sbjct: 61 VKKI 64
Score = 107 bits (256), Expect = 4e-22
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = +3
Query: 315 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 494
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 495 IATTKL 512
+ T K+
Sbjct: 136 LETGKI 141
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 111 bits (267), Expect = 2e-23
Identities = 48/94 (51%), Positives = 66/94 (70%)
Frame = +3
Query: 258 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 437
G MDVV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD
Sbjct: 197 GLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDS 256
Query: 438 RTIRYPDPLIKVNDSIQLDIATTKLWTSSSLSRG 539
RTIR+P+P IK+ D+++ D+ K+ + L G
Sbjct: 257 RTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESG 290
Score = 94.3 bits (224), Expect = 3e-18
Identities = 40/76 (52%), Positives = 55/76 (72%)
Frame = +2
Query: 500 NYEIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNV 679
N +I +F ESGN+C I G N+GRVG I E+H GSFDI H+KD+ G+ FAT+L N+
Sbjct: 278 NNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNI 337
Query: 680 FIIGKGTKAYISLPRG 727
F++G+G K++I LP G
Sbjct: 338 FVLGQGKKSWIELPSG 353
Score = 62.1 bits (144), Expect = 1e-08
Identities = 39/88 (44%), Positives = 48/88 (54%), Gaps = 29/88 (32%)
Frame = +2
Query: 11 ARGPKKHLKRLNAPKAWMLDKLGG-------------------------VYAPRPSTGP- 112
ARGPKKHLKR+NAPK+WML+KLGG +Y + +T P
Sbjct: 83 ARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPS 142
Query: 113 ---HKLRECLPLVIFLRNRLKYALTGNE 187
HKLRE LPL + L+ RL YAL G +
Sbjct: 143 QGPHKLRESLPLSVLLKERLNYALNGRD 170
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 111 bits (267), Expect = 2e-23
Identities = 54/99 (54%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
Frame = +3
Query: 255 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 434
AG MDV+SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHD
Sbjct: 84 AGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHD 143
Query: 435 GRTIRYPDPLIKVNDSIQLDIATTKLWTSSSLSRGT-CV 548
GRTIR+P+ LIK NDSI LD+ K+ S G+ CV
Sbjct: 144 GRTIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCV 182
Score = 89.4 bits (212), Expect = 8e-17
Identities = 38/61 (62%), Positives = 49/61 (80%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E
Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRE 60
Query: 188 S 190
S
Sbjct: 61 S 61
Score = 84.2 bits (199), Expect = 3e-15
Identities = 36/75 (48%), Positives = 54/75 (72%)
Frame = +2
Query: 500 NYEIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNV 679
N +++DFIKF G+LC++ G N+GR+G ++ GS IV +KD G +F+T+ N+
Sbjct: 166 NNKVIDFIKFSIGSLCVVIKGSNIGRIGVFINTIGGQGSDSIVCLKDFNGSSFSTQTKNL 225
Query: 680 FIIGKGTKAYISLPR 724
F+IGKGTK++ISLPR
Sbjct: 226 FVIGKGTKSFISLPR 240
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 109 bits (261), Expect = 9e-23
Identities = 51/104 (49%), Positives = 68/104 (65%)
Frame = +3
Query: 264 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 443
MDV+SI+K E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV HD T
Sbjct: 97 MDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVIHDIHT 156
Query: 444 IRYPDPLIKVNDSIQLDIATTKLWTSSSLSRGTCV*SREAVTWG 575
+R+PD LIKVND+IQ+D+ T K+ T+ G WG
Sbjct: 157 VRHPDSLIKVNDTIQIDLETGKI-TALKFDTGNLCLVTGGGNWG 199
Score = 96.7 bits (230), Expect = 5e-19
Identities = 47/64 (73%), Positives = 54/64 (84%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
+A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+E
Sbjct: 12 VAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALTGDE 70
Query: 188 S*KL 199
K+
Sbjct: 71 VKKI 74
Score = 83.0 bits (196), Expect = 7e-15
Identities = 35/67 (52%), Positives = 50/67 (74%)
Frame = +2
Query: 521 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFIIGKGT 700
+KF++GNLC++TGG N GR+G I +RERHP SFD H+KD+ ++F+ +F+I KG
Sbjct: 182 LKFDTGNLCLVTGGGNWGRIGVITNRERHPVSFDTFHVKDANSNSFSI----IFVIDKGN 237
Query: 701 KAYISLP 721
K +ISLP
Sbjct: 238 KPWISLP 244
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 107 bits (257), Expect = 3e-22
Identities = 45/72 (62%), Positives = 59/72 (81%)
Frame = +2
Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685
+I+DF+KF+ GN M+ GG +GRVG IV RE HPGSF+IVHIKD+ G+TF T+LNNVF+
Sbjct: 168 KIVDFVKFDIGNTAMMIGGNGMGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTRLNNVFV 227
Query: 686 IGKGTKAYISLP 721
IGKGT+ ++LP
Sbjct: 228 IGKGTETLVNLP 239
Score = 104 bits (250), Expect = 2e-21
Identities = 45/85 (52%), Positives = 65/85 (76%)
Frame = +3
Query: 258 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 437
GFMDV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDG
Sbjct: 85 GFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDG 144
Query: 438 RTIRYPDPLIKVNDSIQLDIATTKL 512
RTIRYP P ++ ND+I+L++ T K+
Sbjct: 145 RTIRYPHPELQANDTIKLNLETGKI 169
Score = 103 bits (248), Expect = 3e-21
Identities = 45/76 (59%), Positives = 57/76 (75%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
MARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G E
Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60
Query: 188 S*KL*NNAS*RLMGKL 235
+ N + ++ GK+
Sbjct: 61 VTMIVKNRTIKIDGKI 76
Score = 36.7 bits (81), Expect = 0.58
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1
Query: 181 KRILKIVKQRLIKVDGKVRTDPTYPL 258
+ + IVK R IK+DGK+RTD YP+
Sbjct: 59 REVTMIVKNRTIKIDGKIRTDTRYPV 84
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 101 bits (243), Expect = 1e-20
Identities = 42/82 (51%), Positives = 61/82 (74%)
Frame = +3
Query: 258 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 437
G MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTHDG
Sbjct: 99 GLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDG 158
Query: 438 RTIRYPDPLIKVNDSIQLDIAT 503
RTI Y DP ++V+D+++ +I T
Sbjct: 159 RTISYVDPSVRVHDALKFNIKT 180
Score = 85.0 bits (201), Expect = 2e-15
Identities = 39/61 (63%), Positives = 45/61 (73%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
M R + HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E
Sbjct: 15 MPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKE 74
Query: 188 S 190
+
Sbjct: 75 A 75
Score = 82.2 bits (194), Expect = 1e-14
Identities = 37/72 (51%), Positives = 51/72 (70%)
Frame = +2
Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685
E+ IKF+ G++ M+T G N+GRVGTI E+ SFDIVH+KD++G FAT++ NVF+
Sbjct: 182 EVESVIKFKVGDVAMVTAGGNVGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRIMNVFV 241
Query: 686 IGKGTKAYISLP 721
IG+ ISLP
Sbjct: 242 IGENEHPLISLP 253
Score = 38.3 bits (85), Expect = 0.19
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +1
Query: 181 KRILKIVKQRLIKVDGKVRTDPTYPLDLWMLSQLRRLMNCF 303
K + IVK+RL+KVDGKVRT+ YP L + +L + F
Sbjct: 73 KEAVAIVKRRLVKVDGKVRTNYRYPTGLMDVIELGKSNELF 113
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 94.3 bits (224), Expect = 3e-18
Identities = 41/55 (74%), Positives = 45/55 (81%)
Frame = +2
Query: 23 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNARE 57
Score = 90.2 bits (214), Expect = 4e-17
Identities = 43/85 (50%), Positives = 54/85 (63%)
Frame = +3
Query: 255 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 434
AGFMDVV I KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTHD
Sbjct: 81 AGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHD 140
Query: 435 GRTIRYPDPLIKVNDSIQLDIATTK 509
G IRYPDP + D+I ++ K
Sbjct: 141 GHRIRYPDPHTSIGDTIVYNVKEKK 165
Score = 73.7 bits (173), Expect = 4e-12
Identities = 31/61 (50%), Positives = 43/61 (70%)
Frame = +2
Query: 512 MDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFIIG 691
+D IK G ++TGG N GR+G IV E HPG+F+I H+KD++G FAT+ N+F+IG
Sbjct: 167 VDLIKNRQGKAVIVTGGANRGRIGEIVKVECHPGAFNIAHLKDASGAEFATRAANIFVIG 226
Query: 692 K 694
K
Sbjct: 227 K 227
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 75.8 bits (178), Expect = 1e-12
Identities = 37/89 (41%), Positives = 58/89 (65%)
Frame = +3
Query: 246 YLSAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLV 425
+ G DVVSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V
Sbjct: 81 HFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIV 139
Query: 426 THDGRTIRYPDPLIKVNDSIQLDIATTKL 512
+ G +IR+ DP I + +I++ T+K+
Sbjct: 140 SSCGLSIRFCDPAIDLGYTIKISNETSKV 168
Score = 68.1 bits (159), Expect = 2e-10
Identities = 29/55 (52%), Positives = 37/55 (67%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 172
M G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA
Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYA 55
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 62.9 bits (146), Expect = 8e-09
Identities = 28/62 (45%), Positives = 40/62 (64%)
Frame = +2
Query: 14 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES* 193
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E+
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 194 KL 199
K+
Sbjct: 64 KI 65
Score = 41.1 bits (92), Expect = 0.027
Identities = 22/62 (35%), Positives = 31/62 (50%)
Frame = +2
Query: 509 IMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFII 688
I + F G L ITGG+++G IV E DIV +++ G F T VFI+
Sbjct: 176 IAGHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIV 235
Query: 689 GK 694
G+
Sbjct: 236 GQ 237
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 62.5 bits (145), Expect = 1e-08
Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Frame = +2
Query: 17 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES* 193
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E+
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 194 KL 199
K+
Sbjct: 67 KI 68
Score = 44.0 bits (99), Expect = 0.004
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Frame = +3
Query: 243 PYLSAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 422
P G MDVV I +T + +R++ + R + I+ EEA+ K+C++K +
Sbjct: 84 PKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQI 143
Query: 423 VTHDGRT--IRYPDP------LIKVNDSIQLDI 497
HDG+ + DP + V DS+ L++
Sbjct: 144 TMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLEL 176
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 58.8 bits (136), Expect = 1e-07
Identities = 32/97 (32%), Positives = 50/97 (51%)
Frame = +3
Query: 258 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 437
GFMD++ I KT E++R++ D KGR +++I EE KLCK+ +T + HDG
Sbjct: 86 GFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDG 143
Query: 438 RTIRYPDPLIKVNDSIQLDIATTKLWTSSSLSRGTCV 548
+ + + V D I L + ++ L G CV
Sbjct: 144 KNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACV 180
Score = 46.8 bits (106), Expect = 5e-04
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +2
Query: 17 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*K 196
G +KHLK APK W + + +PS G H + L L + +R+ LK A E+ +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 197 L*NNAS*RLMGKL 235
+ N+ + + G++
Sbjct: 65 IINSGNVLVDGRV 77
Score = 34.7 bits (76), Expect = 2.3
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Frame = +2
Query: 500 NYEIMDFIKFESGNLCMITGGRNLGRVGT----IVSRERHPGSFDIVHIKDSTGHTFATK 667
++EI + + + G +ITGG++ G +GT IV+ +P + + I++S F T
Sbjct: 165 DHEINEVFELKEGACVLITGGKHTGELGTVSEIIVNESSNPNT---IIIENSAKDEFLTL 221
Query: 668 LNNVFIIGKGTKAYISL 718
+ F++G+ A ISL
Sbjct: 222 KDYAFVVGEDAPA-ISL 237
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 58.0 bits (134), Expect = 2e-07
Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = +2
Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSTGHTFATKLNNVF 682
EI IKF G + +I GGRN+GRVG + S ++ G +V ++D++G+ F T L+ VF
Sbjct: 177 EIKGHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVF 236
Query: 683 IIGKGTKAYISLPRG 727
+IG + ISLP G
Sbjct: 237 VIGL-DRPVISLPEG 250
Score = 50.8 bits (116), Expect = 3e-05
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +2
Query: 8 MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGN 184
MAR G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T
Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAR 60
Query: 185 ES*KL*NNAS*RLMG 229
E+ KL + R+ G
Sbjct: 61 EARKLISEGHFRVDG 75
Score = 44.4 bits (100), Expect = 0.003
Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +3
Query: 258 GFMDVVSIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 434
GFMDV+ + T E FR++ Y VK F +H I EE K +++ T L HD
Sbjct: 86 GFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHD 144
Query: 435 GRTI--RYPDPLIKVND 479
GR I R DP V D
Sbjct: 145 GRNILVRVKDPRNPVED 161
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 54.4 bits (125), Expect = 3e-06
Identities = 31/87 (35%), Positives = 44/87 (50%)
Frame = +3
Query: 252 SAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 431
+ GFMDV+ I E +R++Y+ +G + + T E A KL KV+ P N L TH
Sbjct: 79 AVGFMDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTH 136
Query: 432 DGRTIRYPDPLIKVNDSIQLDIATTKL 512
DGRT D KV D + + K+
Sbjct: 137 DGRTFITDDKSKKVGDVWAVSVPDMKI 163
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 54.4 bits (125), Expect = 3e-06
Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +2
Query: 29 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 190
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEA 57
Score = 39.1 bits (87), Expect = 0.11
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +3
Query: 258 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 437
G MDV+ I T E++R++ D + + I+ EEA KL +V+ L HDG
Sbjct: 81 GLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDG 140
Query: 438 R---TIRYPDPLIKVNDSIQLDI 497
R T IK DS+ D+
Sbjct: 141 RNLITTLEAGKQIKTFDSVLYDL 163
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 50.0 bits (114), Expect = 6e-05
Identities = 29/75 (38%), Positives = 40/75 (53%)
Frame = -3
Query: 727 AARQRDVRLRALADYEHVVQLRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDH 548
A +RD RL A D EHV + R + ++ GVL VHN EG + LA D V + DH
Sbjct: 40 ALGKRDHRLVARTDGEHVRRARRKLLTGGVLQVHNFEGTDVLLAALDHPDATGVVTTGDH 99
Query: 547 TQVPRLKLDEVHNFV 503
Q ++LD + + V
Sbjct: 100 AQSADVELDRIGDLV 114
Score = 35.9 bits (79), Expect = 1.0
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = -2
Query: 485 DGIVDFDKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID* 306
+G+ D + + +GAA+++ R+ L QLVL D V ES+L ++D
Sbjct: 121 NGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDE 180
Query: 305 TKQFISLLN*DNI 267
+ FI+L + D++
Sbjct: 181 PEVFIALFDGDDV 193
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 48.8 bits (111), Expect = 1e-04
Identities = 22/77 (28%), Positives = 43/77 (55%)
Frame = +2
Query: 488 VRHCNYEIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATK 667
++ N EI+ +KFE G+LC+IT G++LG + I + ++H++ G K
Sbjct: 162 IKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHLEKIDGKKLTKK 221
Query: 668 LNNVFIIGKGTKAYISL 718
+++ +IG+ + +SL
Sbjct: 222 CSDLLVIGESKTSILSL 238
Score = 46.0 bits (104), Expect = 0.001
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = +3
Query: 264 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 443
MD +S N+ +R++ G+ T++ I E K+CKV ++ ++T D R
Sbjct: 87 MDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRE 146
Query: 444 IRYPDPLIKVNDSI 485
++ IKV DS+
Sbjct: 147 LKINYAKIKVEDSL 160
Score = 32.7 bits (71), Expect = 9.5
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
MA+G KKH KR+++ K G++ + S+GPH + + L+ ++ A E
Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQE 60
Query: 188 S*KL 199
+ K+
Sbjct: 61 AQKV 64
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 47.2 bits (107), Expect = 4e-04
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +2
Query: 29 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 190
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E+
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREA 56
Score = 37.5 bits (83), Expect = 0.33
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = +3
Query: 258 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 437
G MDV+ + NE +R+I D RI EA K+C+++ L HDG
Sbjct: 80 GLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDG 139
Query: 438 RTI 446
R I
Sbjct: 140 RNI 142
Score = 32.7 bits (71), Expect = 9.5
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +2
Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685
++MD+ + + G N+GR GT+++ R D + + F T LN + +
Sbjct: 166 KLMDYYPMQPNQYVIAFNGVNVGRHGTLINWVRSFRKRDAIATVKAKDSEFRTVLNYLLV 225
Query: 686 IGK 694
IGK
Sbjct: 226 IGK 228
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 46.4 bits (105), Expect = 7e-04
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = +2
Query: 14 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 190
+G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E+
Sbjct: 6 KGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEA 64
Score = 42.3 bits (95), Expect = 0.012
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +3
Query: 258 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 437
G MDV+ I + +R++ D + I PEEA YKL +++R T HDG
Sbjct: 88 GLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDG 147
Query: 438 RTI 446
R +
Sbjct: 148 RNV 150
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 44.4 bits (100), Expect = 0.003
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +3
Query: 258 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHD 434
GFMDV+SI+ + ++YD KG+ I + P KL K VK+ G + L HD
Sbjct: 82 GFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHD 140
Query: 435 GRTIRYPDPLIKVNDSIQLDIATTKLWTSSSLSRG 539
G+TI I +D + + I ++ ++ G
Sbjct: 141 GKTIVTDRKDINTSDVLLMKIPDLEIENVLKIAEG 175
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 44.4 bits (100), Expect = 0.003
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 503 YEIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSF--DIVHIKDSTGHTFATKLNN 676
+ I+D + GN+ MI GG++ G+VG IV R S ++ DS G F T
Sbjct: 166 FRIVDHFPYAEGNVAMIVGGKHSGKVGRIVEIIRTASSVPNHVILTDDSAGERFETIEEY 225
Query: 677 VFIIGKGTKA 706
VF++G+ A
Sbjct: 226 VFMVGRSAIA 235
Score = 42.7 bits (96), Expect = 0.009
Identities = 26/85 (30%), Positives = 38/85 (44%)
Frame = +3
Query: 249 LSAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 428
+ G D+VSI K + +R+ DVKG I E AK +LCK++ T L
Sbjct: 77 MGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNF 136
Query: 429 HDGRTIRYPDPLIKVNDSIQLDIAT 503
G + D K DS+ + + T
Sbjct: 137 AFGANV-LADNTYKAKDSVVVTLGT 160
Score = 35.1 bits (77), Expect = 1.8
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +2
Query: 26 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 199
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +E K+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKI 59
>UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 186
Score = 43.6 bits (98), Expect = 0.005
Identities = 23/69 (33%), Positives = 39/69 (56%)
Frame = -3
Query: 721 RQRDVRLRALADYEHVVQLRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQ 542
R+R RL LA+ EH+ Q + + G+L+V ++G + L D ++T V ++ H
Sbjct: 108 RKRYPRLCPLANDEHIAQTSCKFMPSGILNVDGLKGPLVLLPVLDDSNTAPVPSTSHHDN 167
Query: 541 VPRLKLDEV 515
+P +K DEV
Sbjct: 168 IPNIKFDEV 176
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 42.7 bits (96), Expect = 0.009
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +2
Query: 29 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 172
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLA 52
Score = 40.3 bits (90), Expect = 0.047
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Frame = +3
Query: 258 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 437
G MDV+++ + + FR I DV G+ I+ + A KLC+V +T + HDG
Sbjct: 82 GLMDVLTVGEDS--FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDG 139
Query: 438 RTIRYPD-PLIKVNDSIQLDIATTKLWTSSSLSRG 539
R I D L D++ + + + S+G
Sbjct: 140 RNILVSDAKLYDSGDTLVISLPDQSVAGHHPFSKG 174
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 42.7 bits (96), Expect = 0.009
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +2
Query: 29 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL*NN 208
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E K+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 209 AS*RLMGKL 235
+ GK+
Sbjct: 65 GKVLVDGKV 73
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 41.9 bits (94), Expect = 0.015
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +2
Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRE-RHPGSFDIVHIKDSTGHTFATKLNNVF 682
EI+D +KF GN ITGG ++G + TI S E + ++VH+ + F+T + VF
Sbjct: 162 EIVDVLKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVHMNEG----FSTVSSYVF 217
Query: 683 IIGKGTKAYISLP 721
++G K S+P
Sbjct: 218 VMG-SPKYTFSMP 229
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 41.5 bits (93), Expect = 0.020
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 23 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 199
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A E L
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 200 *NN 208
NN
Sbjct: 66 LNN 68
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 40.7 bits (91), Expect = 0.036
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +2
Query: 35 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 199
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL E K+
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKI 58
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 39.9 bits (89), Expect = 0.062
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 29 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRL 163
H KR++ PK+W + K + GPH + +PL + LR+ L
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDML 48
Score = 34.3 bits (75), Expect = 3.1
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTI 589
+++ IK+E GNL MI GG + G VG+I
Sbjct: 162 KVVKHIKYEVGNLAMIVGGSHAGEVGSI 189
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 39.9 bits (89), Expect = 0.062
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 29 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLK 166
H KRL+ PK+W + + G + GPH LPL + +R+ LK
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLK 48
Score = 38.3 bits (85), Expect = 0.19
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +3
Query: 258 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 437
G DV+++ NE +R++ D KGR ++++ E KLC++ T L +DG
Sbjct: 80 GLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTVKGGKIQLNLNDG 138
Query: 438 RTI 446
I
Sbjct: 139 TNI 141
Score = 35.5 bits (78), Expect = 1.3
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 509 IMDFIKFESGNLCMITGGRNLGRVGTIVS-RERHPGSFDIVHIKDSTGHTFATKLNNVFI 685
++ +KFE GNL M+ GG++ G G I+ RE + V I T F T + V +
Sbjct: 162 VVKHLKFEVGNLAMVIGGQHSGETGKIMEIREVKSSRHNTVMISGET--DFETIEDYVIV 219
Query: 686 IGK 694
IG+
Sbjct: 220 IGE 222
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 37.5 bits (83), Expect = 0.33
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Frame = +3
Query: 258 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 437
G MDVV I + R+I D T I+ E+AKYK ++ T V L DG
Sbjct: 80 GLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDG 139
Query: 438 RTIRYP-DPLIKVN----DSIQLDIATTKLWTSSSLSRG 539
R I + L + N ++++++ K+ T+ ++ G
Sbjct: 140 RNILLKGEELSQYNLPTLTTLKIELPEQKITTAYTIKEG 178
Score = 35.1 bits (77), Expect = 1.8
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +2
Query: 29 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 190
H+ R AP + K + R GPHK++E +PL I L+ LK T E+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREA 56
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 37.1 bits (82), Expect = 0.44
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 29 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 172
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYA 50
>UniRef50_UPI0000E814A8 Cluster: PREDICTED: similar to MEGF6; n=1;
Gallus gallus|Rep: PREDICTED: similar to MEGF6 - Gallus
gallus
Length = 1119
Score = 34.3 bits (75), Expect = 3.1
Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = -2
Query: 698 CPCRL*TRCSTSWRRCVPWSP*CAQ----CRR-SRDVSRGTRWCPHAPSYGL 558
C CR R RRC PWSP CAQ C + RDV +G C P Y L
Sbjct: 144 CRCRRQYRLREDGRRCAPWSP-CAQRNGGCMQLCRDV-QGAARCECRPGYRL 193
>UniRef50_A7CME0 Cluster: Putative uncharacterized protein
precursor; n=1; Ralstonia pickettii 12D|Rep: Putative
uncharacterized protein precursor - Ralstonia pickettii
12D
Length = 533
Score = 34.3 bits (75), Expect = 3.1
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 556 GRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQ-RVHNRQGHEG 705
G+P + A HRV +E + R H+ + H+ EQ RVH R G EG
Sbjct: 317 GKPAVQALEAHRVDQERADRRRDAPHRNVQRFHVDARAEQERVHQRDGAEG 367
>UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium
tuberculosis complex|Rep: PROBABLE OXIDASE -
Mycobacterium bovis
Length = 504
Score = 33.9 bits (74), Expect = 4.1
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -2
Query: 140 PGASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAP 9
PG RAT GD + VSV T+R PTS+ W ++ N G P
Sbjct: 93 PGPLIRATVGDEIVVSV-TNRLGDPTSVHWHGIALRNDMDGTEP 135
>UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1;
Pedobacter sp. BAL39|Rep: Putative uncharacterized
protein - Pedobacter sp. BAL39
Length = 195
Score = 33.9 bits (74), Expect = 4.1
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -1
Query: 195 FQDSFPVKAYFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKRFK---CF 25
F F KA FR+ +RK+ G+H+ +D A+T PSL H KR++ F
Sbjct: 11 FLGRFFFKARFRKLIRKL--GRHTEVYLVDIDNTLAHTWPSLQQRHYSAENKRYRSLPIF 68
Query: 24 LGPRAML 4
+G R+ L
Sbjct: 69 IGMRSYL 75
>UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Putative
uncharacterized protein - marine gamma proteobacterium
HTCC2143
Length = 110
Score = 33.9 bits (74), Expect = 4.1
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 550 DHGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHE 702
DH R A HR R RL + H+G+ L+H++EQ +G +
Sbjct: 60 DHQRLFKAALARHRKSRRDQRLHKSLRHKGIAQAELQHKIEQDYQETKGQK 110
>UniRef50_Q0J8P0 Cluster: Os08g0101500 protein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Os08g0101500 protein -
Oryza sativa subsp. japonica (Rice)
Length = 477
Score = 33.9 bits (74), Expect = 4.1
Identities = 21/56 (37%), Positives = 23/56 (41%)
Frame = -3
Query: 700 RALADYEHVVQLRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPR 533
RA AD QL G GV V EG G DG+H P R H +PR
Sbjct: 283 RAAADPAVGAQLGGGGVQADARPVPGAEGVADVGVGDDGSHEPGGVLVRRHAVLPR 338
>UniRef50_A6QCB1 Cluster: TonB-dependent copper receptor; n=1;
Sulfurovum sp. NBC37-1|Rep: TonB-dependent copper
receptor - Sulfurovum sp. (strain NBC37-1)
Length = 670
Score = 33.1 bits (72), Expect = 7.2
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = -3
Query: 667 LRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPRLKLDEVHNFVVAMSN 488
LR E V+ D ++ + L G+ + DH +V + +D + + A+SN
Sbjct: 580 LRAEVVAASAWDDYDADNGEQYLPGYAVLNLKGSKTFADHFEVT-VGVDNLFDKTYAVSN 638
Query: 487 WMESLTLISGSG 452
E LTLISG G
Sbjct: 639 TYEDLTLISGGG 650
>UniRef50_A4X7G0 Cluster: Putative uncharacterized protein; n=1;
Salinispora tropica CNB-440|Rep: Putative
uncharacterized protein - Salinispora tropica CNB-440
Length = 295
Score = 32.7 bits (71), Expect = 9.5
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = -3
Query: 607 MSLAGHDGAHTPQVTASRDHTQVPRLKLDEVHNFV---VAMSNWM 482
+S+ HDG H Q TA+R + V L D H V V +NW+
Sbjct: 31 ISVTPHDGVHRVQATATRAYDLVDALTADAHHTAVVLNVGQNNWL 75
>UniRef50_A2DLM0 Cluster: Ser/Thr protein phosphatase, putative;
n=2; Trichomonas vaginalis G3|Rep: Ser/Thr protein
phosphatase, putative - Trichomonas vaginalis G3
Length = 475
Score = 32.7 bits (71), Expect = 9.5
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = -2
Query: 509 FRSCNV*LDGIVDFDKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCE 330
+ + NV + I + +WV G RY+ R R+ H + + +LL D VDCE
Sbjct: 396 YSASNVTRETINNAAEWVRTT-GEGQWRYRERIYTRADEHNAFYYCALKALLPDDIVDCE 454
Query: 329 SALNI 315
+ LNI
Sbjct: 455 NKLNI 459
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 809,081,611
Number of Sequences: 1657284
Number of extensions: 17663526
Number of successful extensions: 52045
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 49544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52005
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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