Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120005.Seq
(647 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P17500 Cluster: Major capsid protein; n=15; Nucleopolyh... 129 5e-29
UniRef50_P35840 Cluster: Major capsid protein; n=12; Nucleopolyh... 88 1e-16
UniRef50_Q0N423 Cluster: VP39; n=1; Clanis bilineata nucleopolyh... 81 3e-14
UniRef50_Q80LM9 Cluster: Major capsid protein VP39; n=1; Adoxoph... 79 7e-14
UniRef50_Q8QLD5 Cluster: Vp39 capsid; n=1; Mamestra configurata ... 76 9e-13
UniRef50_Q9DWZ8 Cluster: VP39; n=2; Nucleopolyhedrovirus|Rep: VP... 66 7e-10
UniRef50_Q6QXM6 Cluster: ORF086; n=1; Agrotis segetum granulovir... 52 1e-05
UniRef50_Q0ZNY8 Cluster: Major viral capsid protein 39; n=3; Nuc... 49 1e-04
UniRef50_Q9DVV4 Cluster: PxORF79 peptide; n=1; Plutella xylostel... 46 8e-04
UniRef50_Q7T9T4 Cluster: Vp39-capsid; n=5; Granulovirus|Rep: Vp3... 46 8e-04
UniRef50_P41477 Cluster: Late expression factor 4; n=13; Nucleop... 44 0.002
UniRef50_Q9PYT2 Cluster: ORF111; n=4; Granulovirus|Rep: ORF111 -... 41 0.022
UniRef50_Q8JRX1 Cluster: Capsid protein VP39; n=1; Phthorimaea o... 36 0.84
UniRef50_Q16SU8 Cluster: Vacuolar protein sorting-associated pro... 35 2.0
>UniRef50_P17500 Cluster: Major capsid protein; n=15;
Nucleopolyhedrovirus|Rep: Major capsid protein - Orgyia
pseudotsugata multicapsid polyhedrosis virus (OpMNPV)
Length = 351
Score = 129 bits (312), Expect = 5e-29
Identities = 61/85 (71%), Positives = 69/85 (81%)
Frame = +3
Query: 252 FKMSKMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQL 431
FKMSKMVLPI+DEDDNQ+K TIARHLVG+KERG+KRIL+P+ NY VFNL MM AEQL
Sbjct: 56 FKMSKMVLPIYDEDDNQYKRTIARHLVGHKERGVKRILVPTRANYMTVFNLPGMMLAEQL 115
Query: 432 IFHLIYNNEEAVNVICDNLKYTEVF 506
IFHLIY+N VN IC +LK E F
Sbjct: 116 IFHLIYDNRLEVNRICASLKNNENF 140
Score = 75.8 bits (178), Expect = 9e-13
Identities = 34/65 (52%), Positives = 43/65 (66%)
Frame = +1
Query: 85 MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYHDDGWFICNSHLIKRLKCQ 264
MAL+ G++ R+ N CIF +I FD+C+TY+SPCS DA DDGWFIC+ HL R K
Sbjct: 1 MALVSPGVSSRRS-TNHCIFGAIEPFDSCVTYRSPCSSDASVDDGWFICDYHLKLRFKMS 59
Query: 265 KWFCP 279
K P
Sbjct: 60 KMVLP 64
Score = 52.0 bits (119), Expect = 1e-05
Identities = 21/42 (50%), Positives = 30/42 (71%)
Frame = +2
Query: 500 SFHSGTQRVIHSVYATTRSILDTTNPNTFCSRVSRDELRFFD 625
+F T V+ SVY+ TR+IL T+P +CSRV+ D++RFFD
Sbjct: 139 NFIDNTYSVVESVYSATRNILSLTDPQAYCSRVANDDVRFFD 180
>UniRef50_P35840 Cluster: Major capsid protein; n=12;
Nucleopolyhedrovirus|Rep: Major capsid protein -
Lymantria dispar multicapsid nuclear polyhedrosis virus
(LdMNPV)
Length = 356
Score = 88.2 bits (209), Expect = 1e-16
Identities = 41/85 (48%), Positives = 56/85 (65%)
Frame = +3
Query: 252 FKMSKMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQL 431
FK+ KMVLPI D + N + T+ + LV +K G R+LIP+ NY+ V NLNSM AEQL
Sbjct: 56 FKIEKMVLPIPDAEGNIYNRTVGKSLVNHKTLGAARVLIPTRDNYKTVLNLNSMSLAEQL 115
Query: 432 IFHLIYNNEEAVNVICDNLKYTEVF 506
+ H+IY+N EA +C L++ E F
Sbjct: 116 VTHMIYDNVEAQGAVCKALQHNENF 140
Score = 65.7 bits (153), Expect = 9e-10
Identities = 28/65 (43%), Positives = 41/65 (63%)
Frame = +1
Query: 85 MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYHDDGWFICNSHLIKRLKCQ 264
MAL+ ++ ++R N C+F ++ FD C Y SPCSPD+ ++DGWFIC+ H R K +
Sbjct: 1 MALVSGALSTNRLR-NYCVFGAVQPFDNCRAYGSPCSPDSTNNDGWFICDYHSSIRFKIE 59
Query: 265 KWFCP 279
K P
Sbjct: 60 KMVLP 64
>UniRef50_Q0N423 Cluster: VP39; n=1; Clanis bilineata
nucleopolyhedrosis virus|Rep: VP39 - Clanis bilineata
nucleopolyhedrosis virus
Length = 350
Score = 80.6 bits (190), Expect = 3e-14
Identities = 40/85 (47%), Positives = 52/85 (61%)
Frame = +3
Query: 252 FKMSKMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQL 431
FKM KMVLPI D D T+AR LV +K G +RIL+P+ NY V N+ ++ AEQ
Sbjct: 56 FKMEKMVLPIPDADGTALNRTLARSLVNHKAIGDERILVPTKRNYMSVLNILALQLAEQY 115
Query: 432 IFHLIYNNEEAVNVICDNLKYTEVF 506
IFH+IY N+ IC L+ +E F
Sbjct: 116 IFHIIYENDVERERICQMLEISERF 140
Score = 70.9 bits (166), Expect = 2e-11
Identities = 33/65 (50%), Positives = 42/65 (64%)
Frame = +1
Query: 85 MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYHDDGWFICNSHLIKRLKCQ 264
MAL+ GMA ++ N CIF S+ FDAC Y+SPCS DA ++DGW IC+ HL R K +
Sbjct: 1 MALVVSGMATGRIN-NYCIFGSVQPFDACGPYRSPCSDDAKNNDGWLICDYHLSTRFKME 59
Query: 265 KWFCP 279
K P
Sbjct: 60 KMVLP 64
Score = 34.3 bits (75), Expect = 2.6
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 488 KIYRSFHSGTQRVIHSVYATTRSILDTTNPNTFCSRVSRDELRFFDVTNGPN 643
+I F + T +V+ ++ A T +I+ PN +CSR + R + VT+ N
Sbjct: 135 EISERFENDTYKVVDTINARTSAIMAMVTPNRYCSRPLYTDDRIWSVTDENN 186
>UniRef50_Q80LM9 Cluster: Major capsid protein VP39; n=1; Adoxophyes
honmai NPV|Rep: Major capsid protein VP39 - Adoxophyes
honmai nucleopolyhedrovirus
Length = 312
Score = 79.4 bits (187), Expect = 7e-14
Identities = 39/85 (45%), Positives = 50/85 (58%)
Frame = +3
Query: 252 FKMSKMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQL 431
FKM KM L I D D+ T+ R LV + E G RIL+P+ NY+ V N+ + AE L
Sbjct: 56 FKMEKMSLAIPDADNKVLFRTVGRSLVKHTEEGTARILVPNKNNYESVLNVQDLPLAEAL 115
Query: 432 IFHLIYNNEEAVNVICDNLKYTEVF 506
I H+IY N E IC+ LK+TE F
Sbjct: 116 IIHMIYENLEKQKEICERLKFTEHF 140
Score = 63.3 bits (147), Expect = 5e-09
Identities = 28/61 (45%), Positives = 36/61 (59%)
Frame = +1
Query: 85 MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYHDDGWFICNSHLIKRLKCQ 264
MAL+P G+ + N CIFA + SFDAC Y + CS DA +DGW+IC H K +
Sbjct: 1 MALVPAGLTSSRSNSN-CIFAGVQSFDACYRYPNECSKDADSNDGWYICEYHASVHFKME 59
Query: 265 K 267
K
Sbjct: 60 K 60
Score = 33.5 bits (73), Expect = 4.5
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 527 IHSVYATTRSILDTTNPNTFCSRVSRDELRFF--DVTNGP 640
+ +Y+ T S+L+ NP+ FC+ VS LR F ++ N P
Sbjct: 147 VQKLYSNTMSVLNMANPDHFCAEVSLTSLRQFSNEIGNEP 186
>UniRef50_Q8QLD5 Cluster: Vp39 capsid; n=1; Mamestra configurata
NPV-A|Rep: Vp39 capsid - Mamestra configurata NPV-A
Length = 325
Score = 75.8 bits (178), Expect = 9e-13
Identities = 37/85 (43%), Positives = 52/85 (61%)
Frame = +3
Query: 252 FKMSKMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQL 431
F+M KMVLPI D + + ++ + L+ E R+LIP+ TNY++V L SM EQL
Sbjct: 55 FRMEKMVLPIPDAEGTIYNRSVGKSLISGTESN--RVLIPTKTNYEDVLKLPSMSLPEQL 112
Query: 432 IFHLIYNNEEAVNVICDNLKYTEVF 506
IFH+IY+ + N IC L+Y E F
Sbjct: 113 IFHMIYDEPDKQNEICKLLQYNENF 137
Score = 70.1 bits (164), Expect = 4e-11
Identities = 33/65 (50%), Positives = 38/65 (58%)
Frame = +1
Query: 85 MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYHDDGWFICNSHLIKRLKCQ 264
MAL P G Q + N CIF +I FD C TY SPCS DA +DGWFIC HL R + +
Sbjct: 1 MALTPYGS--NQPQSNNCIFGAIRPFDTCRTYSSPCSNDASQEDGWFICEYHLSIRFRME 58
Query: 265 KWFCP 279
K P
Sbjct: 59 KMVLP 63
Score = 39.1 bits (87), Expect = 0.091
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 500 SFHSGTQRVIHSVYATTRSILDTTNPNTFCSRVSRDELRFF 622
+FHS +V+ VY T +L TNP FC+RV+ + R +
Sbjct: 136 NFHSDLYKVVERVYNKTAEVLAKTNPERFCARVNINNFRSY 176
>UniRef50_Q9DWZ8 Cluster: VP39; n=2; Nucleopolyhedrovirus|Rep: VP39
- Spodoptera litura multicapsid nucleopolyhedrovirus
(SpltMNPV)
Length = 302
Score = 66.1 bits (154), Expect = 7e-10
Identities = 33/85 (38%), Positives = 47/85 (55%)
Frame = +3
Query: 252 FKMSKMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQL 431
FK+ K + I D + + + LV + R RILIP+ NYQ V N++ + AE+L
Sbjct: 58 FKIEKTSIAIPDGTGQKLYRIVGKSLVSHNARANDRILIPTQENYQAVMNVSMLPPAERL 117
Query: 432 IFHLIYNNEEAVNVICDNLKYTEVF 506
+ HLIYNN A IC+ L+ E F
Sbjct: 118 VLHLIYNNRTAAAEICNQLRQQENF 142
Score = 54.0 bits (124), Expect = 3e-06
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Frame = +1
Query: 85 MALMPVGMAPRQMRVNRCIFASI--VSFDACITYKSPCSPDAYHDDGWFICNSHLIKRLK 258
MAL+ G A +M+ N CIF + + F+ C Y+SPCS DA +DG F+C HL + K
Sbjct: 1 MALVSGGNANSRMK-NYCIFQGVRPIEFNQCSNYRSPCSDDASQNDGVFMCQYHLSRFFK 59
Query: 259 CQK 267
+K
Sbjct: 60 IEK 62
>UniRef50_Q6QXM6 Cluster: ORF086; n=1; Agrotis segetum
granulovirus|Rep: ORF086 - Agrotis segetum granulosis
virus (AsGV) (Agrotis segetumgranulovirus)
Length = 292
Score = 52.0 bits (119), Expect = 1e-05
Identities = 25/86 (29%), Positives = 43/86 (50%)
Frame = +3
Query: 252 FKMSKMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQL 431
FKM KMV+ I +F M I + L+ +RI+IP +N+ + +M E+
Sbjct: 54 FKMEKMVVRIGSGVGPEFDMLIGKTLIQQNTEDARRIMIPLPSNFLTYLQVENMSATEKF 113
Query: 432 IFHLIYNNEEAVNVICDNLKYTEVFT 509
+F+ IY ++ + +C L E +T
Sbjct: 114 VFYSIYERQDLIAELCRGLVSQEYYT 139
Score = 40.3 bits (90), Expect = 0.039
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 130 NRCIFASIV--SFDACITYKSPCSPDAYHDDGWFICNSHLIKRLKCQK 267
N CIF + F C Y+ PC Y+DDG FIC HL K K +K
Sbjct: 12 NLCIFQGVQPPEFLNCRPYEPPCI-QPYNDDGTFICQYHLAKYFKMEK 58
>UniRef50_Q0ZNY8 Cluster: Major viral capsid protein 39; n=3;
Nucleopolyhedrovirus|Rep: Major viral capsid protein 39
- Neodiprion abietis nucleopolyhedrovirus
Length = 315
Score = 48.8 bits (111), Expect = 1e-04
Identities = 16/45 (35%), Positives = 33/45 (73%)
Frame = +3
Query: 357 RILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVICDNLK 491
R+++P+ NY+++F + + + QL+FHL+Y N+ A++ IC ++K
Sbjct: 104 RVIVPTRRNYEDIFKVAYLPISYQLVFHLLYQNQSAIDKICQDVK 148
>UniRef50_Q9DVV4 Cluster: PxORF79 peptide; n=1; Plutella xylostella
granulovirus|Rep: PxORF79 peptide - Plutella xylostella
granulovirus
Length = 320
Score = 46.0 bits (104), Expect = 8e-04
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Frame = +3
Query: 252 FKMSKMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQL 431
F + KM L I FK+ I + LV ++ + I+IPS NY + +N+M AE+
Sbjct: 54 FPLEKMTLEIPSGTGTSFKLLIGKSLV--QQDATRNIIIPSKANYIDYLRVNNMSPAEKF 111
Query: 432 IFHLIYNNEEA-----VNVICDNLKYTEVFT 509
I + IY + +C++L+ + +T
Sbjct: 112 IMYSIYGESATEPTGLITQLCESLRSQDFYT 142
Score = 40.7 bits (91), Expect = 0.030
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +1
Query: 106 MAPRQMRV-NRCIFASIVSFDA--CITYKSPCSPDAYHDDGWFICNSHL 243
M+ RQ RV N CIF ++ ++ C CS DA +DDG FICN HL
Sbjct: 2 MSLRQNRVYNNCIFQAVSYSNSSLCADPVLHCSKDASNDDGTFICNHHL 50
>UniRef50_Q7T9T4 Cluster: Vp39-capsid; n=5; Granulovirus|Rep:
Vp39-capsid - Adoxophyes orana granulovirus (AoGV)
Length = 291
Score = 46.0 bits (104), Expect = 8e-04
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Frame = +1
Query: 100 VGMAPRQMRVNRCIFASIVS----FDACITYKSPCSPDAYHD--DGWFICNSHLIKRLKC 261
+ + P ++ N CIF +V + C Y SPCSPDA + DG FICN HL K K
Sbjct: 4 INVGPCELN-NYCIFQGVVGMMPDYYRCENYSSPCSPDASNSNLDGTFICNYHLNKYFKI 62
Query: 262 QK 267
K
Sbjct: 63 LK 64
Score = 37.9 bits (84), Expect = 0.21
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = +3
Query: 252 FKMSKMVLPIFDEDDNQ-FKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQ 428
FK+ K I DN+ FKM + + L+ + + + +++ +S E+
Sbjct: 60 FKILKSSFRIPSGKDNKSFKMLVGQSLLQQTDNDTNKNKVLIPLDHELYLKTSSRNSVER 119
Query: 429 LIFHLIYNNEEAVNVICDNLKYTEVF 506
+I + IYN++E + +CD L E F
Sbjct: 120 MIIYTIYNDKEKIKDLCDILMKQEFF 145
>UniRef50_P41477 Cluster: Late expression factor 4; n=13;
Nucleopolyhedrovirus|Rep: Late expression factor 4 -
Autographa californica nuclear polyhedrosis virus
(AcMNPV)
Length = 464
Score = 44.4 bits (100), Expect = 0.002
Identities = 19/22 (86%), Positives = 22/22 (100%)
Frame = -3
Query: 66 MDHGNFMIEKEISYSINFSQDL 1
MD+G+F+IEKEISYSINFSQDL
Sbjct: 1 MDYGDFVIEKEISYSINFSQDL 22
>UniRef50_Q9PYT2 Cluster: ORF111; n=4; Granulovirus|Rep: ORF111 -
Xestia c-nigrum granulosis virus (XnGV) (Xestia
c-nigrumgranulovirus)
Length = 329
Score = 41.1 bits (92), Expect = 0.022
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 130 NRCIFASIV--SFDACITYKSPCSPDAYHDDGWFICNSHLIKRLKCQK 267
N CIF + F C Y PCS D + DG F+C+ HL + K +K
Sbjct: 16 NLCIFQGVQPPEFMNCGIYTPPCSDDCVNKDGTFVCSYHLARYFKLKK 63
Score = 38.3 bits (85), Expect = 0.16
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 252 FKMSKMVLPIFDEDDN-QFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQ 428
FK+ K V I +N FK + L+ RI IP+ NY N+ +M E+
Sbjct: 59 FKLKKEVFEIPSGVNNTSFKYLVGVSLIQQNVPTANRITIPAKDNYYSYLNVANMSSMEK 118
Query: 429 LIFHLIYNNEEAV 467
+F+ IY+ + V
Sbjct: 119 YVFYSIYDEPDTV 131
>UniRef50_Q8JRX1 Cluster: Capsid protein VP39; n=1; Phthorimaea
operculella granulovirus|Rep: Capsid protein VP39 -
Phthorimaea operculella granulovirus
Length = 293
Score = 35.9 bits (79), Expect = 0.84
Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 130 NRCIFASI-VSFDACITYKSPCSPDAYHD--DGWFICNSHLIKRLKCQK 267
N CIF + FD C Y CS DA + DG FICN HL K + K
Sbjct: 13 NYCIFQGVNYQFD-CDGYTRQCSEDARYSQLDGTFICNFHLGKYFRILK 60
>UniRef50_Q16SU8 Cluster: Vacuolar protein sorting-associated protein;
n=3; Fungi/Metazoa group|Rep: Vacuolar protein
sorting-associated protein - Aedes aegypti (Yellowfever
mosquito)
Length = 3659
Score = 34.7 bits (76), Expect = 2.0
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Frame = +3
Query: 270 VLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQLIFHLIY 449
VLPIF+ED K+ + R + N KRI I N+ FN+ + Q F+ +
Sbjct: 2252 VLPIFEEDVEDEKLFVVR--IENLSNAQKRITIEGQINF---FNMTTQRLKIQYKFYKVI 2306
Query: 450 NNEE----AVNVICDNLKYTEVFTAARNALYTAF 539
N E + + + D VF AA N +F
Sbjct: 2307 PNSEKHYVSTSFLIDGGSNANVFGAANNKNQQSF 2340
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 622,104,374
Number of Sequences: 1657284
Number of extensions: 11675696
Number of successful extensions: 28219
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 27320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28210
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -