Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0112
         (672 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q234N3 Cluster: Putative uncharacterized protein; n=1; ...    33   4.8  
UniRef50_Q74MX0 Cluster: NEQ518; n=1; Nanoarchaeum equitans|Rep:...    33   6.3  
UniRef50_Q8I2B2 Cluster: Putative uncharacterized protein PFA014...    33   8.3  

>UniRef50_Q234N3 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1073

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 19/77 (24%), Positives = 40/77 (51%)
 Frame = +2

Query: 272  LKSQHFCLSYTASLKCSSVPSFLEAIFICPVYILGYI*KKLEKNVNYLRKYKKTCFVREP 451
            L S ++CL+YT     + + S + A+F   +Y + +     +K++NY+  +     +   
Sbjct: 903  LFSIYYCLAYTQEKYYAVIQSIIHAVFFILIYCISF-----KKDINYIESFLPNFALN-- 955

Query: 452  LNTRNRYINTTLRLSFV 502
            +NT+ +  NT L  S++
Sbjct: 956  INTKAKGWNTYLLASYL 972


>UniRef50_Q74MX0 Cluster: NEQ518; n=1; Nanoarchaeum equitans|Rep:
           NEQ518 - Nanoarchaeum equitans
          Length = 261

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 15/66 (22%), Positives = 34/66 (51%)
 Frame = +2

Query: 317 CSSVPSFLEAIFICPVYILGYI*KKLEKNVNYLRKYKKTCFVREPLNTRNRYINTTLRLS 496
           C+++PS+++   +  + IL YI     +  N L+ YKK  +    +NT+   +N  +  +
Sbjct: 45  CTNIPSYVKRRALTDIDILFYINDIAFEKKNLLQGYKKIVYEEADVNTKESQLNELINTA 104

Query: 497 FVATLQ 514
            +  ++
Sbjct: 105 AITIMK 110


>UniRef50_Q8I2B2 Cluster: Putative uncharacterized protein PFA0140c;
           n=3; Plasmodium|Rep: Putative uncharacterized protein
           PFA0140c - Plasmodium falciparum (isolate 3D7)
          Length = 563

 Score = 32.7 bits (71), Expect = 8.3
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 473 YIGFVYSRV-PLQNMFFYIFVSNLHFSLIFFKYILKYI 363
           Y+ F+Y  +     +FFYIFV  L F LIFF  IL +I
Sbjct: 515 YVNFIYYYMYNYPFVFFYIFVFFLSFILIFFNTILFFI 552


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 610,900,390
Number of Sequences: 1657284
Number of extensions: 11201634
Number of successful extensions: 23849
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23842
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)