Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0070
         (609 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6CTL2 Cluster: Similar to ca|CA1311|IPF14233 Candida a...    35   1.7  
UniRef50_Q21IU7 Cluster: Putative uncharacterized protein; n=1; ...    33   4.0  
UniRef50_Q92AU9 Cluster: Lin1820 protein; n=12; Listeria|Rep: Li...    32   9.3  
UniRef50_A4M624 Cluster: ABC transporter related; n=3; Petrotoga...    32   9.3  

>UniRef50_Q6CTL2 Cluster: Similar to ca|CA1311|IPF14233 Candida
           albicans Putative transthyretin; n=1; Kluyveromyces
           lactis|Rep: Similar to ca|CA1311|IPF14233 Candida
           albicans Putative transthyretin - Kluyveromyces lactis
           (Yeast) (Candida sphaerica)
          Length = 145

 Score = 34.7 bits (76), Expect = 1.7
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = +1

Query: 220 DMGIINSSKTSIHRNDRRRNVFQLIFHQSNN-KKKKKPSFYN--DMTLKVGCTRQYTFAM 390
           ++G++ +S   +     +   +++ FH  N  K+KK+PSF+   D+  +V  TR Y   +
Sbjct: 73  ELGVVETSTGKLEWQSLKPGTYKIRFHTGNYFKQKKEPSFFPFVDIVFEVSDTRHYHIPL 132

Query: 391 CLFEFEMS 414
            L  +  S
Sbjct: 133 LLSNYGYS 140


>UniRef50_Q21IU7 Cluster: Putative uncharacterized protein; n=1;
           Saccharophagus degradans 2-40|Rep: Putative
           uncharacterized protein - Saccharophagus degradans
           (strain 2-40 / ATCC 43961 / DSM 17024)
          Length = 168

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 367 YSQLLKSCHCKRTVFFFFYYCFDEISIGTRFCDDRFYELM 248
           YS  LK C    TVFF  Y C+++++IG   C    Y L+
Sbjct: 34  YSSTLKKCGDGLTVFFGAYICYEDVAIGND-CTIEEYSLL 72


>UniRef50_Q92AU9 Cluster: Lin1820 protein; n=12; Listeria|Rep:
           Lin1820 protein - Listeria innocua
          Length = 268

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = +1

Query: 187 KTFTIALKLIFDMGIINSSKTSIHRNDRRRNVFQLIFHQS 306
           K + ++ K+I   G+ N++ TS+H  + R NVF LI +Q+
Sbjct: 163 KLYQLSAKIIL-FGVDNNNNTSLHLAEERSNVFPLIENQA 201


>UniRef50_A4M624 Cluster: ABC transporter related; n=3; Petrotoga
           mobilis SJ95|Rep: ABC transporter related - Petrotoga
           mobilis SJ95
          Length = 597

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 16/31 (51%), Positives = 23/31 (74%)
 Frame = +3

Query: 48  IKHMSDSIISNSCYAQITMVPFVLLFNLVIL 140
           IK++ D II N  ++QI  +PFV+LF +VIL
Sbjct: 69  IKYLIDDIIGNHEFSQI--LPFVILFTIVIL 97


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 534,825,290
Number of Sequences: 1657284
Number of extensions: 10078732
Number of successful extensions: 22085
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22073
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)