Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D02
         (561 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IDG7 Cluster: Putative uncharacterized protein PF13_0...    34   2.6  
UniRef50_Q4XP84 Cluster: Putative uncharacterized protein; n=1; ...    34   2.6  
UniRef50_Q7RI77 Cluster: Bromodomain, putative; n=9; cellular or...    32   8.0  

>UniRef50_Q8IDG7 Cluster: Putative uncharacterized protein PF13_0277;
            n=4; Plasmodium|Rep: Putative uncharacterized protein
            PF13_0277 - Plasmodium falciparum (isolate 3D7)
          Length = 2068

 Score = 33.9 bits (74), Expect = 2.6
 Identities = 23/73 (31%), Positives = 36/73 (49%)
 Frame = +3

Query: 144  NNNV*KEFLFSTSF*NTYRLYINIVIRFNY*YFEYFYSKLLLYFINVKF*YSCKF*IIFK 323
            NNN   + ++S SF +  R+Y NI   +   +  YF  K +   I  KF Y+  F  I+ 
Sbjct: 1843 NNNTFFKNIYSDSFESKIRVYFNIKSLYEK-WKIYFEDKQIDISIQDKFLYNLSF--IYN 1899

Query: 324  MYYYKFKEYVYIF 362
            +Y Y    Y+Y +
Sbjct: 1900 VYNYLILIYIYTY 1912


>UniRef50_Q4XP84 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 71

 Score = 33.9 bits (74), Expect = 2.6
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 216 VIRFNY*YFEYFYSKLLLYFINVKF*YSCKF*IIFKMYYYKFKEYVYIF 362
           +I FN+ Y  +F+  L +Y   + F +S    I+F++   +F  Y+Y F
Sbjct: 23  IIMFNFCYCVFFFIILFIYSFTIFFFFSICLHILFELIISQFLIYIYAF 71


>UniRef50_Q7RI77 Cluster: Bromodomain, putative; n=9; cellular
            organisms|Rep: Bromodomain, putative - Plasmodium yoelii
            yoelii
          Length = 3182

 Score = 32.3 bits (70), Expect = 8.0
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +3

Query: 189  NTYRLYINIVIRFNY*YFEYFYSKLLLYFINVKF*YSCKF*IIFKMYYYKFKEYVY 356
            N   +YI+++  +NY    ++    + YF+ +K+  SC   II K Y   F    Y
Sbjct: 1841 NKEDIYIDMIDNYNYVGSHFYDKNFINYFLYIKYLISCSPWIILKDYSNNFSTSKY 1896


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 400,978,067
Number of Sequences: 1657284
Number of extensions: 6749146
Number of successful extensions: 12375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12265
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37488397230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)