Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_D14
(843 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5K671 Cluster: Reverse transcriptase; n=2; Bombyx mori... 345 6e-94
UniRef50_Q03278 Cluster: Retrovirus-related Pol polyprotein from... 126 5e-28
UniRef50_Q49P02 Cluster: Reverse transcriptase-like protein; n=1... 126 9e-28
UniRef50_O44320 Cluster: Reverse transcriptase; n=1; Hippodamia ... 124 2e-27
UniRef50_Q49P04 Cluster: Reverse transcriptase-like protein; n=2... 123 6e-27
UniRef50_Q3C2H3 Cluster: Reverse transcriptase; n=1; Eptatretus ... 121 3e-26
UniRef50_Q76IP1 Cluster: Reverse transcriptase; n=1; Ciona intes... 121 3e-26
UniRef50_Q3C2G5 Cluster: Reverse transcriptase; n=1; Procambarus... 111 3e-23
UniRef50_Q76IP0 Cluster: Reverse transcriptase; n=1; Ciona intes... 109 9e-23
UniRef50_Q3C2G7 Cluster: Reverse transcriptase; n=1; Metacrinus ... 109 9e-23
UniRef50_P16423 Cluster: Retrovirus-related Pol polyprotein from... 103 4e-21
UniRef50_O44319 Cluster: Reverse transcriptase; n=1; Anurida mar... 95 2e-18
UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx mori... 94 5e-18
UniRef50_Q4QQD8 Cluster: Polyprotein; n=1; Schistosoma mansoni|R... 94 5e-18
UniRef50_Q03279 Cluster: Retrovirus-related Pol polyprotein from... 93 8e-18
UniRef50_Q76IN9 Cluster: Reverse transcriptase; n=1; Ciona intes... 89 2e-16
UniRef50_O44323 Cluster: Reverse transcriptase; n=1; Forficula a... 88 2e-16
UniRef50_UPI0000D57891 Cluster: PREDICTED: similar to Hypothetic... 83 1e-14
UniRef50_Q3C2G4 Cluster: Reverse transcriptase; n=1; Triops long... 81 3e-14
UniRef50_Q8MY33 Cluster: Reverse transcriptase; n=9; Obtectomera... 80 8e-14
UniRef50_Q03274 Cluster: Retrovirus-related Pol polyprotein from... 80 8e-14
UniRef50_Q05118 Cluster: Retrovirus-related Pol polyprotein from... 78 3e-13
UniRef50_Q76IN6 Cluster: Reverse transcriptase; n=5; Rasborinae|... 77 7e-13
UniRef50_O44318 Cluster: Reverse transcriptase; n=1; Limulus pol... 75 2e-12
UniRef50_Q3C2H0 Cluster: Reverse transcriptase; n=3; Mauremys re... 74 4e-12
UniRef50_Q3C2H1 Cluster: Reverse transcriptase; n=1; Oryzias lat... 74 5e-12
UniRef50_Q03275 Cluster: Retrovirus-related Pol polyprotein from... 73 9e-12
UniRef50_O44321 Cluster: Reverse transcriptase; n=1; Tenebrio mo... 71 4e-11
UniRef50_Q76IN7 Cluster: Reverse transcriptase; n=1; Ciona savig... 60 7e-08
UniRef50_Q76IN8 Cluster: Reverse transcriptase; n=1; Ciona intes... 59 2e-07
UniRef50_O44324 Cluster: Reverse transcriptase; n=1; Tenebrio mo... 56 1e-06
UniRef50_Q9U8F6 Cluster: Reverse transcriptase; n=1; Nasonia vit... 56 1e-06
UniRef50_Q3C2G6 Cluster: Reverse transcriptase; n=1; Hasarius ad... 54 6e-06
UniRef50_A7SWI8 Cluster: Predicted protein; n=1; Nematostella ve... 41 0.034
UniRef50_A2QKI9 Cluster: Putative uncharacterized protein precur... 37 0.55
UniRef50_UPI00004991CA Cluster: hypothetical protein 202.t00004;... 37 0.73
UniRef50_Q9N9Z1 Cluster: Endonuclease/reverse transcriptase; n=1... 36 0.96
UniRef50_A7RJ85 Cluster: Predicted protein; n=1; Nematostella ve... 36 0.96
UniRef50_Q76IM9 Cluster: Reverse transcriptase; n=1; Ciona intes... 36 1.7
UniRef50_A7IJE3 Cluster: Flavoprotein involved in K+ transport-l... 35 2.9
UniRef50_A1VX42 Cluster: Putative uncharacterized protein; n=1; ... 35 2.9
UniRef50_UPI0000D5776D Cluster: PREDICTED: similar to Hypothetic... 34 3.9
UniRef50_Q76IN3 Cluster: Reverse transcriptase; n=142; Entamoeba... 34 3.9
UniRef50_Q2H912 Cluster: Putative uncharacterized protein; n=1; ... 34 3.9
UniRef50_Q9LCC4 Cluster: Beta-1,4-endoglucanase VII; n=1; Rumino... 34 5.1
UniRef50_A1FRD4 Cluster: Outer membrane efflux protein precursor... 34 5.1
UniRef50_UPI0000D9EC0F Cluster: PREDICTED: hypothetical protein;... 33 6.8
UniRef50_Q6A960 Cluster: Phosphoribosyltransferase; n=2; Actinom... 33 6.8
UniRef50_A7MAH4 Cluster: TrbL protein; n=1; Pseudomonas aerugino... 33 6.8
UniRef50_Q6WKY8 Cluster: Guanine nucleotide exchange factor; n=2... 33 9.0
UniRef50_Q0V1F2 Cluster: Putative uncharacterized protein; n=1; ... 33 9.0
>UniRef50_Q5K671 Cluster: Reverse transcriptase; n=2; Bombyx mori|Rep:
Reverse transcriptase - Bombyx mori (Silk moth)
Length = 1114
Score = 345 bits (849), Expect = 6e-94
Identities = 163/164 (99%), Positives = 163/164 (99%)
Frame = +1
Query: 13 GGKPLRQVSCVERWRYLGVDFEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIP 192
GGKPLRQVSCVERWRYLGVDFEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIP
Sbjct: 688 GGKPLRQVSCVERWRYLGVDFEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIP 747
Query: 193 RFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATI 372
RFQHGFV GNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATI
Sbjct: 748 RFQHGFVLGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATI 807
Query: 373 PDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAWKQLRRFSR 504
PDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAWKQLRRFSR
Sbjct: 808 PDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAWKQLRRFSR 851
>UniRef50_Q03278 Cluster: Retrovirus-related Pol polyprotein from
type-1 retrotransposable element R2 (Retrovirus-related
Pol polyprotein from type I retrotransposable element R2)
[Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease]; n=1; Nasonia vitripennis|Rep:
Retrovirus-related Pol polyprotein from type-1
retrotransposable element R2 (Retrovirus-related Pol
polyprotein from type I retrotransposable element R2)
[Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease] - Nasonia vitripennis (Parasitic wasp)
Length = 1025
Score = 126 bits (305), Expect = 5e-28
Identities = 60/154 (38%), Positives = 92/154 (59%)
Frame = +1
Query: 13 GGKPLRQVSCVERWRYLGVDFEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIP 192
G + + Q+ ++W+YLGV + + G + ++ +I+ L ++ APLKPQQR+ IL LIP
Sbjct: 615 GNQEITQLGHADQWKYLGVVYNSYGPIQVKINIAGDLQRVTAAPLKPQQRMAILGMFLIP 674
Query: 193 RFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATI 372
RF H V G S+ +R D IRK V WLRLP D P Y+HA +++GGL IP+ + I
Sbjct: 675 RFIHKLVLGRTSNADVRKGDKIIRKTVRGWLRLPHDTPIGYFHAPIKEGGLGIPAFESRI 734
Query: 373 PDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRW 474
P+L+ R L +S AR+ D + ++ +W
Sbjct: 735 PELLKSRIEALGASNMQTARSLLGGDWVAERKKW 768
>UniRef50_Q49P02 Cluster: Reverse transcriptase-like protein; n=1;
Ixodes scapularis|Rep: Reverse transcriptase-like
protein - Ixodes scapularis (Black-legged tick) (Deer
tick)
Length = 513
Score = 126 bits (303), Expect = 9e-28
Identities = 68/157 (43%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Frame = +1
Query: 16 GKPLRQVSCVERWRYLGVDFEASGC-VTLEHSISSALNNISRAPLKPQQRLEILRAHLIP 192
G PL RW+YLGV+F +G V L ++S L +++APLKPQQRL ILR +LIP
Sbjct: 96 GIPLPACGIEARWKYLGVEFSPNGRNVPLTKDVASMLERVAKAPLKPQQRLVILRFYLIP 155
Query: 193 RFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATI 372
R H V G + L+ LDVQIR AV +W+ LP D P YYHA V +GGL + S I
Sbjct: 156 RLYHRLVLGRWNRKLLKRLDVQIRDAVRKWMALPHDTPLGYYHAPVAEGGLGVGSFSTAI 215
Query: 373 PDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAWK 483
P + V+R + +S + R AA + ++ L A K
Sbjct: 216 PWMQVQRLPRMATSSSPICRQAADTYMVKTALDRAKK 252
>UniRef50_O44320 Cluster: Reverse transcriptase; n=1; Hippodamia
convergens|Rep: Reverse transcriptase - Hippodamia
convergens (Convergent lady beetle)
Length = 493
Score = 124 bits (300), Expect = 2e-27
Identities = 66/176 (37%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Frame = +1
Query: 16 GKPLRQVSCVERWRYLGVDFEASGCVTL-EHSISSALNNISRAPLKPQQRLEILRAHLIP 192
G L QV W+YLG+ F G ++ L ++RAPLKPQQR+ +LR L+P
Sbjct: 65 GSWLSQVDGTTFWKYLGLQFRGCGMAGCGSDDVAECLERLTRAPLKPQQRMHLLRVFLLP 124
Query: 193 RFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATI 372
RF H + FG ++ LR LD+++R A+ +RLP DVP Y+HA GGL IP + I
Sbjct: 125 RFYHVWTFGRLNAGILRRLDIRVRNAIRTSVRLPHDVPVGYFHAPTNAGGLGIPQLSRFI 184
Query: 373 PDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAWKQLRRFSRRHKDPTAGTRRW 540
P L ++RF L S R A+++ K+RW ++L R D T R +
Sbjct: 185 PLLRLKRFERLAHSSVESVRECARTEPAVAKVRWCRERLADVVDRVADGTQSLREF 240
>UniRef50_Q49P04 Cluster: Reverse transcriptase-like protein; n=2;
Ixodidae|Rep: Reverse transcriptase-like protein -
Amblyomma americanum (lone star tick)
Length = 510
Score = 123 bits (296), Expect = 6e-27
Identities = 65/179 (36%), Positives = 94/179 (52%), Gaps = 2/179 (1%)
Frame = +1
Query: 16 GKPLRQVSCVERWRYLGVDFEASGCVT--LEHSISSALNNISRAPLKPQQRLEILRAHLI 189
GK + +C WRYLGV F A+G + + +++ L +S APLKPQQRL +LR +L+
Sbjct: 96 GKDMTSQNCTSLWRYLGVTFSATGRIQGPIRFELAALLQRVSSAPLKPQQRLVVLRYYLM 155
Query: 190 PRFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRAT 369
PR H G IS L +D IR + +WL LP DVP +++A ++ GGL I +R T
Sbjct: 156 PRLTHRLTLGPISAKTLTAIDRTIRSNIRRWLALPLDVPMGFFYAQIEQGGLGINCLRTT 215
Query: 370 IPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAWKQLRRFSRRHKDPTAGTRRWRS 546
IP L +RRF + S S AA + + A + + ++P R W S
Sbjct: 216 IPSLRLRRFAKMTHSSNSACTFAATRRTVTDSIHQAERLCVFKGQTLRNPKESGRFWSS 274
>UniRef50_Q3C2H3 Cluster: Reverse transcriptase; n=1; Eptatretus
burgeri|Rep: Reverse transcriptase - Eptatretus burgeri
(Inshore hagfish)
Length = 486
Score = 121 bits (291), Expect = 3e-26
Identities = 63/146 (43%), Positives = 81/146 (55%), Gaps = 1/146 (0%)
Frame = +1
Query: 13 GGKPLRQVSCVERWRYLGVDFEASGCVTLEHS-ISSALNNISRAPLKPQQRLEILRAHLI 189
G + L + + +YLG+ F G + S + L N+ RAP+KPQQR+ +LR HLI
Sbjct: 66 GQQNLGVLDAASQLKYLGIQFLPRGAAPSDGSALEKGLRNLRRAPIKPQQRMFMLRDHLI 125
Query: 190 PRFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRAT 369
P+ QHG V G LR LDVQ+R WLRLP D P AY+HA DGGL +P T
Sbjct: 126 PQLQHGLVLGAARRGTLRKLDVQMRHHTRLWLRLPKDTPVAYFHARSADGGLGLPQFSVT 185
Query: 370 IPDLIVRRFGGLDSSPWSVARAAAKS 447
IP L RR GL+ S RA ++
Sbjct: 186 IPILRERRMRGLEQSDSPYVRAVIRT 211
>UniRef50_Q76IP1 Cluster: Reverse transcriptase; n=1; Ciona
intestinalis|Rep: Reverse transcriptase - Ciona
intestinalis (Transparent sea squirt)
Length = 998
Score = 121 bits (291), Expect = 3e-26
Identities = 69/161 (42%), Positives = 93/161 (57%), Gaps = 2/161 (1%)
Frame = +1
Query: 13 GGKPLRQVSCVERWRYLGVDFEASGC-VTLEHSISSALNNISRAPLKPQQRLEILRAHLI 189
GG + V+ +RYLGV+ A+G V S++S L N+SRAPLKPQQRL IL HL+
Sbjct: 581 GGVRIPAVAVSGSYRYLGVNISAAGMRVDAADSLASKLANLSRAPLKPQQRLYILCTHLL 640
Query: 190 PRFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRAT 369
P H V + S L+ LD +R AV +WLRLP D PKAY+HA DGGL +P ++
Sbjct: 641 PSIYHQLVLSSTSKKFLKYLDRCVRVAVRRWLRLPKDTPKAYFHAKCNDGGLGVPELQRV 700
Query: 370 IPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKL-RWAWKQL 489
IP R+ + S V +AA + +K L RW+ +L
Sbjct: 701 IPLQKAGRWLKMTRSQDPVVQAAVGLEYFQKLLERWSTPEL 741
>UniRef50_Q3C2G5 Cluster: Reverse transcriptase; n=1; Procambarus
clarkii|Rep: Reverse transcriptase - Procambarus clarkii
(Red swamp crayfish)
Length = 480
Score = 111 bits (266), Expect = 3e-23
Identities = 66/183 (36%), Positives = 93/183 (50%), Gaps = 1/183 (0%)
Frame = +1
Query: 1 YWIFGGKPLRQVSCVERWRYLGVDFEASGCVTLEHSI-SSALNNISRAPLKPQQRLEILR 177
Y++ G + +S + ++YLG+ A G S+ L NI++APLKPQQRL +L+
Sbjct: 63 YYV-GDDAIGTMSVADEYKYLGILIGAGGRRLSYGSLFEDGLTNITKAPLKPQQRLYLLK 121
Query: 178 AHLIPRFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPS 357
HLIP+ H V G+++ L LD ++R A WLRLP D P A+ HA V+DGGL IP
Sbjct: 122 HHLIPKMNHRLVLGHVAKTELARLDRRLRHATRGWLRLPHDTPNAFIHADVKDGGLGIPD 181
Query: 358 VRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAWKQLRRFSRRHKDPTAGTRR 537
+I +R G L S V AAA + ++R T RR
Sbjct: 182 FATSIRLQKNKRLGALTGSADPVVVAAALLPAFQARMRRWVDPATAAGTPSSRTTECARR 241
Query: 538 WRS 546
WR+
Sbjct: 242 WRA 244
>UniRef50_Q76IP0 Cluster: Reverse transcriptase; n=1; Ciona
intestinalis|Rep: Reverse transcriptase - Ciona
intestinalis (Transparent sea squirt)
Length = 1104
Score = 109 bits (262), Expect = 9e-23
Identities = 51/117 (43%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Frame = +1
Query: 34 VSCVERWRYLGVDFEASGCVT-LEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGF 210
+S ++++YLG++ +A G ++ L +SRAPLKPQQRL +LR HL+P+ QHG
Sbjct: 692 LSITQQYKYLGINIDAQGARNDAARILTEGLAELSRAPLKPQQRLYLLRVHLLPKLQHGL 751
Query: 211 VFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDL 381
V + + L LD +R A+ +WL LP D P A+YHA DGGL I + TIP L
Sbjct: 752 VLSSCAKRALTYLDKSVRSAIRRWLTLPKDTPTAFYHAKACDGGLGITRLEHTIPIL 808
>UniRef50_Q3C2G7 Cluster: Reverse transcriptase; n=1; Metacrinus
rotundus|Rep: Reverse transcriptase - Metacrinus
rotundus
Length = 492
Score = 109 bits (262), Expect = 9e-23
Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 1/163 (0%)
Frame = +1
Query: 1 YWIFGGKPLRQVSCVERWRYLGVDFEASGC-VTLEHSISSALNNISRAPLKPQQRLEILR 177
Y G+ + +S + ++YLG+ A G ++ + + L N++RAPLKP QRL ILR
Sbjct: 64 YLSVDGENVPAISITKTYKYLGIQVGAHGTRAEVKEKLVAGLANLTRAPLKPFQRLHILR 123
Query: 178 AHLIPRFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPS 357
L+P H V ++ L+ LD +R A WL+LP D P A+ HA +DGGL+I S
Sbjct: 124 VQLMPSLTHQLVLAGVTKGYLKDLDRLVRAASRSWLKLPHDTPNAFLHANYKDGGLSIDS 183
Query: 358 VRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAWKQ 486
+ TIP L +RFG L S AA +++ K++ W++
Sbjct: 184 LSLTIPFLKGKRFGKLTVSSDDTVLAATETNSF-KRMHKKWRE 225
>UniRef50_P16423 Cluster: Retrovirus-related Pol polyprotein from
type-2 retrotransposable element R2DM (Retrovirus-related
Pol polyprotein from type II retrotransposable element
R2DM) [Includes: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]; n=26;
Drosophila|Rep: Retrovirus-related Pol polyprotein from
type-2 retrotransposable element R2DM (Retrovirus-related
Pol polyprotein from type II retrotransposable element
R2DM) [Includes: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease] - Drosophila
melanogaster (Fruit fly)
Length = 1057
Score = 103 bits (248), Expect = 4e-21
Identities = 54/133 (40%), Positives = 74/133 (55%), Gaps = 2/133 (1%)
Frame = +1
Query: 13 GGKPLRQVSCVERWRYLGVDFEASGCVTLE--HSISSALNNISRAPLKPQQRLEILRAHL 186
G + + + W+YLG++F A+G V I L +++APLKPQQRL LR L
Sbjct: 640 GSSEIPSLKRTDEWKYLGINFTATGRVRCNPAEDIGPKLQRLTKAPLKPQQRLFALRTVL 699
Query: 187 IPRFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRA 366
IP+ H G+++ LR D IR V +WL LP DVP A+ HA + GGL IPS+R
Sbjct: 700 IPQLYHKLALGSVAIGVLRKTDKLIRYYVRRWLNLPLDVPIAFVHAPPKSGGLGIPSLRW 759
Query: 367 TIPDLIVRRFGGL 405
P L +RR +
Sbjct: 760 VAPMLRLRRLSNI 772
>UniRef50_O44319 Cluster: Reverse transcriptase; n=1; Anurida
maritima|Rep: Reverse transcriptase - Anurida maritima
Length = 1151
Score = 95.1 bits (226), Expect = 2e-18
Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 3/164 (1%)
Frame = +1
Query: 13 GGKPLRQVSCVERWRYLGVDFEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIP 192
GG + V E W+YLG G S+ + L I+++PLKPQQ+L ++R HL+P
Sbjct: 726 GGGFMTPVGVTETWKYLGAYLGQIGIQPARLSLQTFLERIAKSPLKPQQKLYLIRVHLLP 785
Query: 193 RFQHGFVFGNISDDRLRMLDVQIRKAV-GQ--WLRLPADVPKAYYHAAVQDGGLAIPSVR 363
+ + V I L LD +R A+ G+ L LP VP A+++A + +GGL + +R
Sbjct: 786 KLIYPLVMAPIRASMLNKLDRMVRVALTGKDGILHLPQSVPSAFFYAPIGEGGLGLMELR 845
Query: 364 ATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAWKQLRR 495
+IP ++ RF + +S RAAAK ++ A + LR+
Sbjct: 846 TSIPAMVKARFERMMNSTCHHVRAAAKGAANSNRIALANRFLRK 889
>UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx
mori|Rep: Reverse transcriptase - Bombyx mori (Silk
moth)
Length = 1076
Score = 93.9 bits (223), Expect = 5e-18
Identities = 48/89 (53%), Positives = 54/89 (60%)
Frame = +3
Query: 537 VALDKTQALLFHGPGRAPPLGAHXXXXXXXXXXXXXXXXXXXXELDGRWNFRAHFAKLGP 716
VAL+K++AL FHGP RAPP+ H LD RW FRAHFA+L P
Sbjct: 726 VALNKSEALWFHGPRRAPPVDTHIVVGGVRIGVGVQLKYLGLV-LDSRWAFRAHFAELVP 784
Query: 717 RLMATXGSLXRLLPNVXGPDQVARRLXXG 803
RLM T GSL RLLPN+ GPDQV RRL G
Sbjct: 785 RLMGTAGSLSRLLPNIGGPDQVVRRLYAG 813
>UniRef50_Q4QQD8 Cluster: Polyprotein; n=1; Schistosoma mansoni|Rep:
Polyprotein - Schistosoma mansoni (Blood fluke)
Length = 1144
Score = 93.9 bits (223), Expect = 5e-18
Identities = 50/136 (36%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Frame = +1
Query: 16 GKPLRQVSCVERWRYLGVDFEASGCVTLEHS--ISSALNNISRAPLKPQQRLEILRAHLI 189
G + +S + + YLG+ F G + H +++ L IS APLKPQQR++IL+ +L+
Sbjct: 731 GMRIPPLSAADTFDYLGIKFNFKGRCPVAHIDLLNNYLTEISCAPLKPQQRMKILKDNLL 790
Query: 190 PRFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRAT 369
PR + G + L+ +D I A+ +WLRLP+D P AY+H+ V GGL I + ++
Sbjct: 791 PRLLYPLTLGIVHLKTLKSMDRNIHTAIRKWLRLPSDTPLAYFHSPVAAGGLGILHLSSS 850
Query: 370 IPDLIVRRFGGLDSSP 417
+P +R L SSP
Sbjct: 851 VPFHRRKRLETLLSSP 866
>UniRef50_Q03279 Cluster: Retrovirus-related Pol polyprotein from
type-1 retrotransposable element R2 (Retrovirus-related
Pol polyprotein from type I retrotransposable element
R2) [Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease]; n=1; Bradysia coprophila|Rep:
Retrovirus-related Pol polyprotein from type-1
retrotransposable element R2 (Retrovirus-related Pol
polyprotein from type I retrotransposable element R2)
[Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease] - Sciara coprophila (Fungus gnat)
Length = 869
Score = 93.1 bits (221), Expect = 8e-18
Identities = 44/117 (37%), Positives = 71/117 (60%)
Frame = +1
Query: 25 LRQVSCVERWRYLGVDFEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQH 204
L+ ++ + W+YLGV + SG + S+ L+ +++ PLKPQQR+ +L+ +IP+ +
Sbjct: 459 LKPLTISDLWKYLGVVYTTSGPEVAKVSMDDDLSKLTKGPLKPQQRIHLLKTFVIPKHLN 518
Query: 205 GFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIP 375
V + L +D+ IRK V +WLRLP DVP A+ +A V+ GG IP ++ IP
Sbjct: 519 RLVLSRTTATGLCKMDLLIRKYVRRWLRLPGDVPVAFLYAPVKAGGKGIPCLKQWIP 575
>UniRef50_Q76IN9 Cluster: Reverse transcriptase; n=1; Ciona
intestinalis|Rep: Reverse transcriptase - Ciona
intestinalis (Transparent sea squirt)
Length = 779
Score = 88.6 bits (210), Expect = 2e-16
Identities = 49/129 (37%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Frame = +1
Query: 52 WRYLGVDFEASGC-VTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVFGNIS 228
++YLGV A + + S L + APLKPQQR+ ILR +++PR H F N +
Sbjct: 405 YKYLGVRVGAGDTRAECKEKLMSDLKETTEAPLKPQQRIFILRNYILPRSLHILTFTNTT 464
Query: 229 DDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLD 408
L+ LD IR V +WL+LP D P Y ++ +DGGL +P + + +P L +RR +
Sbjct: 465 ARLLKQLDSAIRIHVRRWLKLPKDTPLGYLYSDYKDGGLGVPRLLSRVPLLRIRRMAKYN 524
Query: 409 SS--PWSVA 429
+S P +VA
Sbjct: 525 TSEDPTTVA 533
>UniRef50_O44323 Cluster: Reverse transcriptase; n=1; Forficula
auricularia|Rep: Reverse transcriptase - Forficula
auricularia (European earwig)
Length = 1033
Score = 88.2 bits (209), Expect = 2e-16
Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +1
Query: 52 WRYLGVDFEASG-CV--TLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVFGN 222
+ YLGV F A G C T+ H + ++ +++APLKPQQRL LR ++P H G
Sbjct: 628 FHYLGVPFTAEGRCRDDTIAH-LKRKIDVLTKAPLKPQQRLFALRVVILPSCYHILTLGG 686
Query: 223 ISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIP 375
+ L+ +D+ +R A +W LP D P AY+HA+ +DGGL +PS+R IP
Sbjct: 687 SNLSLLKKIDLMVRAAGRKWCCLPKDTPNAYFHASSRDGGLGLPSMRWLIP 737
>UniRef50_UPI0000D57891 Cluster: PREDICTED: similar to Hypothetical
115 kDa protein in type I retrotransposable element R1DM
(ORF 2), partial; n=1; Tribolium castaneum|Rep:
PREDICTED: similar to Hypothetical 115 kDa protein in
type I retrotransposable element R1DM (ORF 2), partial -
Tribolium castaneum
Length = 2033
Score = 82.6 bits (195), Expect = 1e-14
Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Frame = +1
Query: 22 PLRQVSCVERWRYLGVDFEASGCVTLE-HSISSALNNISRAPLKPQQRLEILRAHLIPRF 198
P+ V ++ ++YLG++F +G H++S LNN+ RAPLKP Q+ +R ++IPR
Sbjct: 1809 PIPNVDALDAFKYLGLEFGHNGVERPTIHNLSVWLNNLRRAPLKPDQKCLFIRQYVIPRL 1868
Query: 199 QHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPD 378
+G ++ LR D IR+ + + L P + HA+V DGGL I +R IP
Sbjct: 1869 LYGMQNPQVTSRVLREADRLIRRHLKTYCHLNVHTPDSLIHASVSDGGLGIMELRKAIPR 1928
Query: 379 LIVRRFGG-LDSSPWSVARAAAKSDKIR 459
+ + R L+ + S + +S+++R
Sbjct: 1929 IFLGRLVKLLNKNKNSYLSSVLQSNRVR 1956
>UniRef50_Q3C2G4 Cluster: Reverse transcriptase; n=1; Triops
longicaudatus|Rep: Reverse transcriptase - Triops
longicaudatus
Length = 491
Score = 81.0 bits (191), Expect = 3e-14
Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Frame = +1
Query: 19 KPLRQVSCVERWRYLGVDFEASGCVTLEHSISS---ALNNISRAPLKPQQRLEILRAHLI 189
+P+R + E+ +YLG+ + G V S+S AL ++ +APLKPQQ++ +LR HLI
Sbjct: 72 EPIRLLGVNEQCKYLGIHYTPLGAVDTRASVSKLRLALTSLMKAPLKPQQKVVMLRMHLI 131
Query: 190 PRFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAI 351
PRF H F + L LD +R+ + L+LP + +++ +++GGL I
Sbjct: 132 PRFIHTFTYSECYPKLLSQLDRLVRRWLKTALKLPTSLSSDFFYLPIKEGGLGI 185
>UniRef50_Q8MY33 Cluster: Reverse transcriptase; n=9;
Obtectomera|Rep: Reverse transcriptase - Papilio xuthus
Length = 1053
Score = 79.8 bits (188), Expect = 8e-14
Identities = 41/90 (45%), Positives = 47/90 (52%)
Frame = +3
Query: 534 KVALDKTQALLFHGPGRAPPLGAHXXXXXXXXXXXXXXXXXXXXELDGRWNFRAHFAKLG 713
+VAL K++AL FHGP PP GAH LDGRW F HF +LG
Sbjct: 703 EVALQKSEALYFHGPRSRPPPGAHIVVGGVNINIQSHIRYLGLM-LDGRWTFEGHFRQLG 761
Query: 714 PRLMATXGSLXRLLPNVXGPDQVARRLXXG 803
P+LM T +L LLPNV GP RRL G
Sbjct: 762 PKLMRTAAALGSLLPNVGGPKAACRRLFTG 791
>UniRef50_Q03274 Cluster: Retrovirus-related Pol polyprotein from
type-1 retrotransposable element R2 (Retrovirus-related
Pol polyprotein from type I retrotransposable element
R2) [Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease]; n=1; Popillia japonica|Rep:
Retrovirus-related Pol polyprotein from type-1
retrotransposable element R2 (Retrovirus-related Pol
polyprotein from type I retrotransposable element R2)
[Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease] - Popillia japonica (Japanese beetle)
Length = 711
Score = 79.8 bits (188), Expect = 8e-14
Identities = 48/145 (33%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Frame = +1
Query: 43 VERWRYLGVDFEASGCVT-LEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVFG 219
++ +RYLG F SG +++S L + APLKP+Q+L ++R H++P+ +G
Sbjct: 313 MQTFRYLGHFFGLSGAAKPTVYNLSRWLKCVEAAPLKPEQKLSLIREHVVPKLLYGLQNP 372
Query: 220 NISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFG 399
+++ LR D IR V + L L P ++A V+DGGL + +R +IP +++ R
Sbjct: 373 SVTARTLRDADKLIRTTVKRCLHLHLHTPNQCFYARVRDGGLGLTDLRRSIPRIMLDRIN 432
Query: 400 GLDSS-PWSVARAAAKS-DKIRKKL 468
SS P +VA + S D +R +L
Sbjct: 433 ARRSSDPMAVALFSCPSFDHLRGRL 457
>UniRef50_Q05118 Cluster: Retrovirus-related Pol polyprotein from
type-1 retrotransposable element R2 (Retrovirus-related
Pol polyprotein from type I retrotransposable element
R2) [Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease]; n=2; Popillia japonica|Rep:
Retrovirus-related Pol polyprotein from type-1
retrotransposable element R2 (Retrovirus-related Pol
polyprotein from type I retrotransposable element R2)
[Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease] - Popillia japonica (Japanese beetle)
Length = 606
Score = 77.8 bits (183), Expect = 3e-13
Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 5/141 (3%)
Frame = +1
Query: 16 GKPLRQVSCVERWRYLGVDFEASGCVT-LEHSISSALNNISRAPLKPQQRLEILRAHLIP 192
G+ ++ + + ++YLG+ F ++G ++++ L N+ +APLKP Q+ IL+ HL+P
Sbjct: 189 GRYIKPLGGINTFKYLGLTFSSTGVAKPTVYNLTRWLRNLEKAPLKPNQKFYILKTHLLP 248
Query: 193 RFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATI 372
R +G ++ L+ D R+ + L + HA ++DGGL + +R I
Sbjct: 249 RLFYGLQSPGVTAGILQECDRLARRTTRKIFHLNVHTGSQFLHARIRDGGLGLVQMRYRI 308
Query: 373 PDLIVRRFGGL----DSSPWS 423
P ++ +R G L D++ WS
Sbjct: 309 PCILSKRLGSLKQGNDTTNWS 329
>UniRef50_Q76IN6 Cluster: Reverse transcriptase; n=5; Rasborinae|Rep:
Reverse transcriptase - Danio rerio (Zebrafish)
(Brachydanio rerio)
Length = 1193
Score = 76.6 bits (180), Expect = 7e-13
Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 3/162 (1%)
Frame = +1
Query: 4 WIFGGKPLRQVSCVERWRYLGVDFEASGCVT---LEHSISSALNNISRAPLKPQQRLEIL 174
W+ GGK L+ + +YLGV + L ++ I ++ LKP Q++ IL
Sbjct: 750 WVLGGKALQLTNIENSIKYLGVKVNPWAGIEKPDLTVALDRWCKRIGKSLLKPSQKVYIL 809
Query: 175 RAHLIPRFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIP 354
IPR + G D L+ LD IRKAV +WL LP +A +GGL I
Sbjct: 810 NQFAIPRLFYLADHGGAGDVMLQNLDGTIRKAVKKWLHLPPSTCNGLLYARNCNGGLGIC 869
Query: 355 SVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAW 480
+ IP + RR L +S + +A + ++ +K + AW
Sbjct: 870 KLTRHIPSMQARRMFRLANSSDPLMKAMMRGSRVEQKFKKAW 911
>UniRef50_O44318 Cluster: Reverse transcriptase; n=1; Limulus
polyphemus|Rep: Reverse transcriptase - Limulus
polyphemus (Atlantic horseshoe crab)
Length = 1168
Score = 75.4 bits (177), Expect = 2e-12
Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 3/152 (1%)
Frame = +1
Query: 4 WIFGGKPLRQVSCVERWRYLGVD---FEASGCVTLEHSISSALNNISRAPLKPQQRLEIL 174
W+ G+ L + + +RYLG + ++ ++ + NI+ +PLKP QR++IL
Sbjct: 737 WLVNGETLPMIGPEQTYRYLGASICPWTGINSGPVKPTLEKWIANITESPLKPHQRVDIL 796
Query: 175 RAHLIPRFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIP 354
+ +PR + G ++ L+ LD +++AV +W LPA ++ +DGGLA+
Sbjct: 797 CKYALPRLFYQLELGTLNFKELKELDSMVKQAVKRWCHLPACTADGLLYSRHRDGGLAVV 856
Query: 355 SVRATIPDLIVRRFGGLDSSPWSVARAAAKSD 450
+ + +P L ++ L S V + A+SD
Sbjct: 857 KLESLVPCLKIKTNLRLVHSTDPVISSLAESD 888
>UniRef50_Q3C2H0 Cluster: Reverse transcriptase; n=3; Mauremys
reevesii|Rep: Reverse transcriptase - Chinemys reevesii
(Reeve's turtle)
Length = 535
Score = 74.1 bits (174), Expect = 4e-12
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 3/162 (1%)
Frame = +1
Query: 4 WIFGGKPLRQVSCVERWRYLGVDFE---ASGCVTLEHSISSALNNISRAPLKPQQRLEIL 174
W G L + E +YLGV + L + + L I+RAPLKP +L +L
Sbjct: 61 WKIGDDTLNMIIPGESEKYLGVKVDPWIGFAKPALSEKLDTWLERINRAPLKPSPKLAML 120
Query: 175 RAHLIPRFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIP 354
+ R + + L LD +IR+AV +WL LPA+ + +A +DGGL +
Sbjct: 121 NTFTVSRVIYLADHTDCKIAHLSTLDDKIRRAVKEWLHLPANTCNGFLYARSRDGGLGVT 180
Query: 355 SVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAW 480
+ + IP + RR + S R A ++ I + R W
Sbjct: 181 RLASLIPSIQARRLHRIAHSKDETIRCIALANDIESEYRKLW 222
>UniRef50_Q3C2H1 Cluster: Reverse transcriptase; n=1; Oryzias
latipes|Rep: Reverse transcriptase - Oryzias latipes
(Medaka fish) (Japanese ricefish)
Length = 512
Score = 73.7 bits (173), Expect = 5e-12
Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 8/157 (5%)
Frame = +1
Query: 4 WIFGGKPLRQVSCVERWRYLGVDFEASGCVT---LEHSISSALNNISRAPLKPQQRLEIL 174
W G P+ + E RYLGV V L ++ + + IS APLKP QR+ +L
Sbjct: 57 WEICGSPIHMIPPGESVRYLGVQVGPGRGVMEPDLIPTVHTWIERISEAPLKPSQRMRVL 116
Query: 175 RAHLIPRFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIP 354
+ +PR + G ++ +L +D +RKAV +WL L ++ +DGGL +
Sbjct: 117 NSFALPRIIYQADLGKVTVTKLAQIDGIVRKAVKKWLHLSPSTCNGLLYSRNRDGGLGLL 176
Query: 355 SVRATIPDLIVRRFGGLDSSP--WS---VARAAAKSD 450
+ IP + +R + SP W+ + + +KSD
Sbjct: 177 KLERLIPSVRTKRIYRMSRSPDIWTRRMTSHSVSKSD 213
>UniRef50_Q03275 Cluster: Retrovirus-related Pol polyprotein from
type-1 retrotransposable element R2 (Retrovirus-related
Pol polyprotein from type I retrotransposable element
R2) [Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease]; n=1; Popillia japonica|Rep:
Retrovirus-related Pol polyprotein from type-1
retrotransposable element R2 (Retrovirus-related Pol
polyprotein from type I retrotransposable element R2)
[Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease] - Popillia japonica (Japanese beetle)
Length = 482
Score = 72.9 bits (171), Expect = 9e-12
Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Frame = +1
Query: 13 GGKPLRQVSCVERWRYLGVDFEASGCVTLE-HSISSALNNISRAPLKPQQRLEILRAHLI 189
GGK + Q++ + ++YLG + SG V + + L + APLKP Q+L ++R H++
Sbjct: 64 GGKAIPQLTPDDYFKYLGSRYNFSGQVRPSVELLKTQLARVQSAPLKPAQKLTMIRDHVV 123
Query: 190 PRFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRAT 369
RF ++ L+ D +R +V + L L P AY HA +++GGL I S+RA
Sbjct: 124 ARFLSCLQSVRVTLKALKDADRLVRLSVRKVLHLNKSSPDAYIHAPIREGGLGIISLRAH 183
Query: 370 IPDLIVRR 393
IP ++ R
Sbjct: 184 IPAIMRSR 191
>UniRef50_O44321 Cluster: Reverse transcriptase; n=1; Tenebrio
molitor|Rep: Reverse transcriptase - Tenebrio molitor
(Yellow mealworm)
Length = 469
Score = 70.9 bits (166), Expect = 4e-11
Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
Frame = +1
Query: 19 KPLRQVSCVERWRYLGVDFEASGCVTLE-HSISSALNNISRAPLKPQQRLEILRAHLIPR 195
+P++ + + ++YLG F +G +S L I +APLKPQQ++ I++ +L+P
Sbjct: 66 EPIKPIEVGKAFKYLGQQFTCTGSTNCSTKDLSEQLLRIKKAPLKPQQKINIIKTYLMPA 125
Query: 196 FQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIP 375
+ H ++ LR +D +IR V L LP + +A + GGL + S IP
Sbjct: 126 YIHSMQNPAVNKKILREVDRKIRMVVKGILHLPLHLSNTAIYAPAKMGGLGMFSFSRKIP 185
Query: 376 DLIVRRFGGL 405
++++R L
Sbjct: 186 IIVLKRLNNL 195
>UniRef50_Q76IN7 Cluster: Reverse transcriptase; n=1; Ciona
savignyi|Rep: Reverse transcriptase - Ciona savignyi
(Pacific transparent sea squirt)
Length = 445
Score = 60.1 bits (139), Expect = 7e-08
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Frame = +1
Query: 55 RYLGVDFEASGCVTLE-HSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVFGNISD 231
++LG+ G L+ ++IS AL + A LKPQQ++ +L+ HLIPR+++ +
Sbjct: 49 KFLGIMIGPHGSCRLQRNTISEALKRLMGAKLKPQQKIYMLKNHLIPRWRYSLSISEQTQ 108
Query: 232 DRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSV 360
L +D ++R+ V + L P + + H ++GGL I S+
Sbjct: 109 QTLYWVDREVRRTVKKILHAPGCLSDNFIHLDSRNGGLGICSM 151
>UniRef50_Q76IN8 Cluster: Reverse transcriptase; n=1; Ciona
intestinalis|Rep: Reverse transcriptase - Ciona
intestinalis (Transparent sea squirt)
Length = 806
Score = 58.8 bits (136), Expect = 2e-07
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Frame = +1
Query: 55 RYLGVDFEASG-CVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVFGNISD 231
RYLG+ F G C I +L ++ + LKP+Q++ +LR+ LIPR+++ ++
Sbjct: 661 RYLGIHFGMVGSCRIRRREIRESLLRLASSALKPEQKVFMLRSFLIPRWRYSVTLTRVTV 720
Query: 232 DRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIP 354
L +D +R V L P ++ + H ++ GGL IP
Sbjct: 721 SFLSWIDRVVRMRVRAILHAPHNLSSEWLHLSIAKGGLGIP 761
>UniRef50_O44324 Cluster: Reverse transcriptase; n=1; Tenebrio
molitor|Rep: Reverse transcriptase - Tenebrio molitor
(Yellow mealworm)
Length = 488
Score = 56.0 bits (129), Expect = 1e-06
Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 14/149 (9%)
Frame = +1
Query: 1 YWIFGGKPLRQVSCVERWRYLGVDFEASGC--VTLEH-----------SISSALNNISRA 141
Y G +RQV+ + ++YLG F G ++LE ++S +NN+ +A
Sbjct: 60 YSRLNGAHIRQVAIGDVFKYLGNHFAFDGVSDISLEELNSQINNLMKAPLNSQINNLMKA 119
Query: 142 PLKPQQRLEILR-AHLIPRFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYY 318
PLKP Q+ +ILR + H ++S+ LR D +I++AV L LP + +
Sbjct: 120 PLKPWQKFKILRQTSDTIGWIHCLQSPSVSNKVLREADRKIKRAVKSILHLPVTIADSSI 179
Query: 319 HAAVQDGGLAIPSVRATIPDLIVRRFGGL 405
+A+ +DGGL + IP ++ R+ L
Sbjct: 180 YASQRDGGLGVFCFSRKIPVILRSRWESL 208
>UniRef50_Q9U8F6 Cluster: Reverse transcriptase; n=1; Nasonia
vitripennis|Rep: Reverse transcriptase - Nasonia
vitripennis (Parasitic wasp)
Length = 1265
Score = 55.6 bits (128), Expect = 1e-06
Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 3/155 (1%)
Frame = +1
Query: 16 GKPLRQVSCVERWRYLGVDFEA-SGCVTLEHS--ISSALNNISRAPLKPQQRLEILRAHL 186
G + +S E ++YLG G + S ++ + R PLKP Q++++L+ ++
Sbjct: 852 GNTVPSISPSETFKYLGAKVSPWKGLLEGFESDAFREVISRVQRLPLKPMQKVDLLQMYI 911
Query: 187 IPRFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRA 366
PR+ +G + + L+ +D IR + + L LP V ++ + + GGL + V
Sbjct: 912 FPRYTYGLITSPPAKAVLKTIDRIIRTRIKEILHLPESVSSSFLYTPRKQGGLGLLEVEK 971
Query: 367 TIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLR 471
+ +R S V RAA S+ +L+
Sbjct: 972 MVLIPALRNGLRARQSHDPVTRAAMNSNAADDRLK 1006
>UniRef50_Q3C2G6 Cluster: Reverse transcriptase; n=1; Hasarius
adansoni|Rep: Reverse transcriptase - Hasarius adansoni
Length = 484
Score = 53.6 bits (123), Expect = 6e-06
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 3/126 (2%)
Frame = +1
Query: 7 IFGGKPLRQVSCVERWRYLGVDFE---ASGCVTLEHSISSALNNISRAPLKPQQRLEILR 177
IFGG + + + RYLG+ + + L + AL + A LKP Q+L + +
Sbjct: 62 IFGGA-IPGLRSDQSLRYLGISYSPWRGFDALDLPANFEDALGRVKGAALKPYQKLHLWQ 120
Query: 178 AHLIPRFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPS 357
A++ P F H L LDV +R V LP + + +DGGL +
Sbjct: 121 AYIQPHFLHQLALAMPPRGALERLDVAVRAMVKSIFHLPRCITDGVLYCRPRDGGLGLQR 180
Query: 358 VRATIP 375
+ +P
Sbjct: 181 LSQLVP 186
>UniRef50_A7SWI8 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 182
Score = 41.1 bits (92), Expect = 0.034
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 13 GGKPLRQVSCVERWRYLGVDFEASGCVTLEHSI-SSALNNISRAPLKPQQRL 165
GGK +R ++ E +YL + A G E+ + AL N+SRA LKPQQRL
Sbjct: 27 GGK-IRSLAANETNKYLSISIGAQGAKAAEYKVLKEALYNLSRARLKPQQRL 77
>UniRef50_A2QKI9 Cluster: Putative uncharacterized protein
precursor; n=1; Aspergillus niger|Rep: Putative
uncharacterized protein precursor - Aspergillus niger
Length = 201
Score = 37.1 bits (82), Expect = 0.55
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Frame = -3
Query: 391 ASQ*GPGWSLAPMGSLSRRPELRRDNMPWA----HPPVALATVRLLSGFGHRAFSIGHPR 224
AS GP S P + P+ R+ +PW HPP T+ + F H+A S+ PR
Sbjct: 78 ASFYGPSSSGIPSPLKHKIPQCSRNTLPWTRKKIHPPGTYNTINKQAWFMHQAHSLARPR 137
Query: 223 -CFQ-TQNRAGISESDELSKS 167
C R G+ E++ +K+
Sbjct: 138 ICSSWASARNGVRENETSTKT 158
>UniRef50_UPI00004991CA Cluster: hypothetical protein 202.t00004;
n=2; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 202.t00004 - Entamoeba histolytica HM-1:IMSS
Length = 410
Score = 36.7 bits (81), Expect = 0.73
Identities = 20/92 (21%), Positives = 42/92 (45%)
Frame = +1
Query: 88 CVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVFGNISDDRLRMLDVQIRK 267
C + + +SS L++++ + + +I + ++GF L +D QIRK
Sbjct: 219 CTRILNDVSSILSSLNTMKYSILNTIRKINNDIISKLRYGFSIVKYKLGELEKIDKQIRK 278
Query: 268 AVGQWLRLPADVPKAYYHAAVQDGGLAIPSVR 363
+ Q ++PK+ + + + GL + S R
Sbjct: 279 LLIQLQLYSRNIPKSRLYVKINELGLGLMSAR 310
>UniRef50_Q9N9Z1 Cluster: Endonuclease/reverse transcriptase; n=1;
Drosophila melanogaster|Rep: Endonuclease/reverse
transcriptase - Drosophila melanogaster (Fruit fly)
Length = 989
Score = 36.3 bits (80), Expect = 0.96
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 669 LDGRWNFRAHFAKLGPRLMATXGSLXRLLPNVXGPDQVARRL 794
+D R +F+AH + T +L R++PNV GP ARRL
Sbjct: 724 IDRRLSFKAHARYASKKAAMTAAALARIMPNVGGPRLPARRL 765
>UniRef50_A7RJ85 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 466
Score = 36.3 bits (80), Expect = 0.96
Identities = 25/81 (30%), Positives = 35/81 (43%)
Frame = +1
Query: 364 ATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAWKQLRRFSRRHKDPTAGTRRWR 543
+T + V R+ GL +PW RA K+R+ R +LRR R + PT R+ R
Sbjct: 312 STAGNYYVGRYDGLHRTPW---RATLSLRKLRRHKRAPTLRLRRLRRHKRAPTLSLRKLR 368
Query: 544 STKPRPCCFTGRDERRLWVPT 606
K P + R PT
Sbjct: 369 RHKRVPTLSLRKLRRHKRAPT 389
>UniRef50_Q76IM9 Cluster: Reverse transcriptase; n=1; Ciona
intestinalis|Rep: Reverse transcriptase - Ciona
intestinalis (Transparent sea squirt)
Length = 1540
Score = 35.5 bits (78), Expect = 1.7
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Frame = +1
Query: 145 LKPQQRLEILRAHLIPRFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHA 324
L P Q+L L+ L+P I+ L LD ++R+ + RL +A +H
Sbjct: 1117 LTPHQKLIALKRFLLPSLSFHLRVRPIARSELIALDRRVRECLRVAFRLTKPSCQAVFHT 1176
Query: 325 AVQDGGLAIPSVRATIPDL-IVRRFGGLDSSPWSVARAAAKSDKI 456
GL +PSV + L I + F L S +V+ A+ K+
Sbjct: 1177 PTDMDGLGVPSVCSESSILTIAQGFKVLTSPDGTVSATASARVKL 1221
>UniRef50_A7IJE3 Cluster: Flavoprotein involved in K+ transport-like
protein; n=1; Xanthobacter autotrophicus Py2|Rep:
Flavoprotein involved in K+ transport-like protein -
Xanthobacter sp. (strain Py2)
Length = 219
Score = 34.7 bits (76), Expect = 2.9
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -3
Query: 325 RRDNMP-WAHPPVALATVRLLSGFGHRAFSIGHP 227
RRD +P WAHPP A A ++LL G H A+ + P
Sbjct: 120 RRDGLPEWAHPPDAAALLKLLVG-PHEAYGLETP 152
>UniRef50_A1VX42 Cluster: Putative uncharacterized protein; n=1;
Polaromonas naphthalenivorans CJ2|Rep: Putative
uncharacterized protein - Polaromonas naphthalenivorans
(strain CJ2)
Length = 269
Score = 34.7 bits (76), Expect = 2.9
Identities = 20/50 (40%), Positives = 23/50 (46%)
Frame = +2
Query: 440 PNLIRFVRNCGGPGNSSAGSAVVTRIRRLGLEGGARQNPGPVVSRAGTSA 589
P I FVR G + + R+ EGG RQNP PV RAG A
Sbjct: 208 PRQIGFVRRLADVGQPWSDLMKAVKHERVQEEGGNRQNPVPVPRRAGPKA 257
>UniRef50_UPI0000D5776D Cluster: PREDICTED: similar to Hypothetical
115 kDa protein in type I retrotransposable element R1DM
(ORF 2); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to Hypothetical 115 kDa protein in type I
retrotransposable element R1DM (ORF 2) - Tribolium
castaneum
Length = 973
Score = 34.3 bits (75), Expect = 3.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 669 LDGRWNFRAHFAKLGPRLMATXGSLXRLLPNVXGPDQVARRLXXG 803
+D F H AK + T +L R++PN+ GP R+L G
Sbjct: 706 IDQACTFSDHLAKTAAKAEGTISALSRIMPNIGGPGSNRRKLLAG 750
>UniRef50_Q76IN3 Cluster: Reverse transcriptase; n=142; Entamoeba
histolytica|Rep: Reverse transcriptase - Entamoeba
histolytica
Length = 801
Score = 34.3 bits (75), Expect = 3.9
Identities = 20/92 (21%), Positives = 42/92 (45%)
Frame = +1
Query: 88 CVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVFGNISDDRLRMLDVQIRK 267
C + + +SS L++++ + + + +I + ++GF L +D QIRK
Sbjct: 397 CTRILNDVSSILSSLNTMKYSSLNTIRKINSDIISKLRYGFCIVPWKLGELEKIDKQIRK 456
Query: 268 AVGQWLRLPADVPKAYYHAAVQDGGLAIPSVR 363
++ Q ++PK+ + GL + S R
Sbjct: 457 SLIQLQLYSRNIPKSRLFVKKNELGLGLMSPR 488
>UniRef50_Q2H912 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 488
Score = 34.3 bits (75), Expect = 3.9
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 8/128 (6%)
Frame = -1
Query: 741 KSRPSPSVEGPTSQSERGSSTDH--PVRGRGTEDXXXXXXXXXXXXXXGHPEAA--LVPA 574
+ P P T+QS +ST H V+ T + GHPE++ + A
Sbjct: 210 RHNPHPLTRHITNQSSNLASTSHIHHVQATQTNNRLPPIADVFGQGLSGHPESSGHAMFA 269
Query: 573 RETTGP----GFCRAPPSSPSRRILVTTAEPAELFPGPPQFLTNLIRFGGGSCH*PW*RV 406
++ P P S+ SR AEL G P+ L L+R+GG H P
Sbjct: 270 NQSRAPLPSPHHPPMPQSARSREYKSAEEAQAELAGGRPELLPKLVRYGG---HQPPTPP 326
Query: 405 EPPETPHN 382
PP+ P +
Sbjct: 327 SPPQAPRD 334
>UniRef50_Q9LCC4 Cluster: Beta-1,4-endoglucanase VII; n=1;
Ruminococcus albus|Rep: Beta-1,4-endoglucanase VII -
Ruminococcus albus
Length = 753
Score = 33.9 bits (74), Expect = 5.1
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 443 NLIRFVRNCGGPGNSSAGSAVVTRIRRLGLEGGARQNPGPVVSRAGTSAASG 598
N+ R N GG G + A +T + + L GG + +++GTSA++G
Sbjct: 560 NMCRVTYNLGGSGVNVPYKATITNLSLIKLSGGGSSSSSSSSTQSGTSASTG 611
>UniRef50_A1FRD4 Cluster: Outer membrane efflux protein precursor;
n=1; Stenotrophomonas maltophilia R551-3|Rep: Outer
membrane efflux protein precursor - Stenotrophomonas
maltophilia R551-3
Length = 510
Score = 33.9 bits (74), Expect = 5.1
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +1
Query: 298 DVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWA 477
DV KA G + + RA +P L + FGG+ + S+ ++AK +L+W
Sbjct: 306 DVAKADARLRASLGNVVLAE-RAHLPRLTLNVFGGILAPFGSLGDSSAKRFSAGPELQWE 364
Query: 478 WKQLRRFSRRHKDPTAGT-RRWRS 546
W R R + AG+ + W +
Sbjct: 365 WLSFGRKKAREEAARAGSDQNWHA 388
>UniRef50_UPI0000D9EC0F Cluster: PREDICTED: hypothetical protein;
n=1; Macaca mulatta|Rep: PREDICTED: hypothetical protein
- Macaca mulatta
Length = 219
Score = 33.5 bits (73), Expect = 6.8
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -3
Query: 352 GSLSRRPELRRDNMPWAHPPVALATVRLLSGFGHRAFSIGHP 227
GS SR PE+R+ ++ ALA VR LS HR + P
Sbjct: 14 GSRSRLPEVRKSSLSQPLEVPALAPVRALSALAHRQLRVDRP 55
>UniRef50_Q6A960 Cluster: Phosphoribosyltransferase; n=2;
Actinomycetales|Rep: Phosphoribosyltransferase -
Propionibacterium acnes
Length = 588
Score = 33.5 bits (73), Expect = 6.8
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = -3
Query: 442 WRRLLP-LTMVTSRAPRNASQ*GPGWSLAPM--GSLSRRPELRRDNMPWAHPPVALATVR 272
W R +P + TS A R A+ GWSL L + RRD + H V V
Sbjct: 14 WDRPIPRIGDTTSSATRAAAP--TGWSLGDQVQQGLDTAIDTRRDIRRYRHDDVPKELVN 71
Query: 271 LLSGFGHRAFSIGH 230
+ GHRA S+GH
Sbjct: 72 TVLWAGHRAPSVGH 85
>UniRef50_A7MAH4 Cluster: TrbL protein; n=1; Pseudomonas
aeruginosa|Rep: TrbL protein - Pseudomonas aeruginosa
Length = 553
Score = 33.5 bits (73), Expect = 6.8
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +2
Query: 458 VRNCGGPGNSSAGSAVVTRIRRLGLEGGARQNPGPVVSRAGTSAASG 598
V N GG GN AG+A+ + + GA G V TSAA G
Sbjct: 281 VGNAGGIGNFGAGAAIGAAMGAASMAAGAASVAGAAVMGGATSAAGG 327
>UniRef50_Q6WKY8 Cluster: Guanine nucleotide exchange factor; n=2;
Entamoeba histolytica|Rep: Guanine nucleotide exchange
factor - Entamoeba histolytica
Length = 630
Score = 33.1 bits (72), Expect = 9.0
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 4 WIFGGKPLRQVSCVERWRYLGVDFEASGCVTLEHS-ISSALNNISRAPLKPQQRL 165
W+ GK + Q+SCVE+WR L + + S HS ++S+++ P+ +Q L
Sbjct: 552 WLERGKSVAQMSCVEKWR-LAQEAKQSMAEAAVHSRVNSSIDMTVSTPVCSKQHL 605
>UniRef50_Q0V1F2 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 1201
Score = 33.1 bits (72), Expect = 9.0
Identities = 21/88 (23%), Positives = 39/88 (44%)
Frame = -2
Query: 665 EAEVPKTGHPDPDADASDHEVGTQRRRSSRPVKQQGLGFVERHLRVPAVGSL*RRLNLRS 486
E ++P+ P P A+ S T R R+ + +++ R + + S
Sbjct: 419 ERDIPEAQAPAPKAERSPPRKPTLRERAEQEKRRRAGSVASDQQRAESPAEPAPAPSAFS 478
Query: 485 CFQAHRSFLRILSDLAAALATDHGDESS 402
FQA S +++ + A A+DH D++S
Sbjct: 479 RFQAAASQMKVSGPASPAAASDHSDQAS 506
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 887,071,202
Number of Sequences: 1657284
Number of extensions: 19410779
Number of successful extensions: 65843
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 61264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65758
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 73783549980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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