Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D13
         (793 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-l...   180   5e-44
UniRef50_Q8UZB5 Cluster: Coat protein; n=1; Grapevine fleck viru...    49   2e-04
UniRef50_Q71EB5 Cluster: 25kDa coat protein; n=1; Grapevine Red ...    40   0.072
UniRef50_Q5BEH5 Cluster: Putative uncharacterized protein; n=2; ...    34   4.7  

>UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-like
           latent virus|Rep: Coat protein - Bombyx mori Macula-like
           latent virus
          Length = 237

 Score =  180 bits (437), Expect = 5e-44
 Identities = 96/132 (72%), Positives = 96/132 (72%)
 Frame = +1

Query: 28  MEEIVPLXVSAASAIPSLVNAFSSSKPPQTDNPSARSMDMQXXXXXXXXXXXXXXXXXXX 207
           MEEIVPL VSAASAIPSLVNAFSSSKPPQTDNPSARSMDMQ                   
Sbjct: 1   MEEIVPLVVSAASAIPSLVNAFSSSKPPQTDNPSARSMDMQPLPSSDSVVLSSQPLPPAP 60

Query: 208 XXXXXXXXXXXXQRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLX 387
                       QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNL 
Sbjct: 61  PPPLGSSLGRSPQRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLE 120

Query: 388 AVVFPXAPXLXI 423
           AVVFP AP L I
Sbjct: 121 AVVFPSAPSLKI 132


>UniRef50_Q8UZB5 Cluster: Coat protein; n=1; Grapevine fleck
           virus|Rep: Coat protein - Grapevine fleck virus
          Length = 230

 Score = 48.8 bits (111), Expect = 2e-04
 Identities = 22/51 (43%), Positives = 34/51 (66%)
 Frame = +1

Query: 256 IPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLXAVVFPXA 408
           +PFQ L++D+TGTE+   S+++ S P V ++ + YR A L +L A V P A
Sbjct: 68  LPFQFLWYDITGTESSYTSLSIASRPEVVTVARPYRHARLTSLEAFVQPTA 118


>UniRef50_Q71EB5 Cluster: 25kDa coat protein; n=1; Grapevine Red
           Globe virus|Rep: 25kDa coat protein - Grapevine Red
           Globe virus
          Length = 235

 Score = 39.9 bits (89), Expect = 0.072
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = +1

Query: 256 IPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLXAVVFPXAP 411
           +PFQ +++DLT  ET   S+ + S P   S+   Y  A L +L   VFP  P
Sbjct: 71  LPFQFIFYDLTNAETGFTSLDLASKPPFLSLTSPYAYAVLQSLELTVFPKNP 122


>UniRef50_Q5BEH5 Cluster: Putative uncharacterized protein; n=2;
           Trichocomaceae|Rep: Putative uncharacterized protein -
           Emericella nidulans (Aspergillus nidulans)
          Length = 558

 Score = 33.9 bits (74), Expect = 4.7
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +1

Query: 577 PXFLXQPPQIKXHFXKPLNPXXKGFPPGVKTPXFFKRAXXGFFPPPXXG 723
           P    Q PQ + ++  P  P    FPPG   P     A  G++PPP  G
Sbjct: 146 PPGYPQQPQFQGYY-NPYGPRYPPFPPGPGYPAMPYGAPPGWYPPPGQG 193


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 583,243,315
Number of Sequences: 1657284
Number of extensions: 9527910
Number of successful extensions: 16944
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16906
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67496806780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)