Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_D04
(863 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 426 e-118
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 392 e-108
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 306 5e-82
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 262 1e-68
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 245 1e-63
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 163 5e-39
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 130 3e-29
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 124 4e-27
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 120 6e-26
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 117 4e-25
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 114 3e-24
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 109 7e-23
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 108 2e-22
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 103 4e-21
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 102 1e-20
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 101 2e-20
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 101 2e-20
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 101 3e-20
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 100 4e-20
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 96 1e-18
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 95 2e-18
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 93 1e-17
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 89 1e-16
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 89 1e-16
UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN full-le... 40 0.081
UniRef50_A7TI46 Cluster: Putative uncharacterized protein; n=1; ... 37 0.76
UniRef50_Q69NC6 Cluster: Putative uncharacterized protein OJ1742... 36 1.7
UniRef50_Q1EYM9 Cluster: Purine catabolism PurC-like; n=2; Clost... 35 3.1
UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1; ... 34 4.0
UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to ENSANGP000... 34 5.3
UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1; ... 34 5.3
UniRef50_Q9MAP1 Cluster: Putative F-box protein At1g33020; n=4; ... 33 7.1
UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsi... 33 9.3
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 426 bits (1050), Expect = e-118
Identities = 188/273 (68%), Positives = 222/273 (81%)
Frame = +3
Query: 33 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 212
MSHRKFSAPRHGS+GF P+KRS RHRGKVK+FPKDDPSKPVHLTAF+GYKAGMTH+VRE
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 392
DRPGSK+NKKE+VEAVTI+ETPPMV VG+VGY+ETP GLR TV+AEH+S++C+RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 393 NWYXXXXXXXXXXXXXWQDKLGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 572
NW+ WQD+ G+K +EKDF M +YC V+RVIAHTQM+LL RQKKAH+
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 573 MEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXL 752
MEIQ+NGGT+ +K+ WARE LE+ +PV+ VF QDEMID I SRWHTK L
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 753 PRKTHKGLXKVACIGAWHPSRVSFTVXRAGQKG 851
PRKTH+GL KVACIGAWHP+RV+F+V RAGQKG
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKG 273
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 392 bits (964), Expect = e-108
Identities = 176/273 (64%), Positives = 210/273 (76%)
Frame = +3
Query: 33 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 212
MSHRKFSAPRHG +GF P KRS RHRGKVK +P+DDPS+PVHLTAF+GYKAGMTH +RE
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 392
RPG KI+K+E VEAVTI+ETPP+V VGVVGY+ TP GLR+ T++AEH+S++CRRRFYK
Sbjct: 61 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
Query: 393 NWYXXXXXXXXXXXXXWQDKLGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 572
+W+ W+D G+K ++KDF M +YC V+RVI HTQMKLL RQKKAHI
Sbjct: 121 DWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHI 180
Query: 573 MEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXL 752
MEIQLNGGT+ +KV WA+ LEK +PV SVF+Q E+ID I SRWHTK L
Sbjct: 181 MEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKL 240
Query: 753 PRKTHKGLXKVACIGAWHPSRVSFTVXRAGQKG 851
PRKTHKGL KVACIGAWHP+RV ++ RAGQKG
Sbjct: 241 PRKTHKGLRKVACIGAWHPARVGCSIARAGQKG 273
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 306 bits (751), Expect = 5e-82
Identities = 144/278 (51%), Positives = 185/278 (66%), Gaps = 3/278 (1%)
Frame = +3
Query: 27 SSMSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVR 206
++MSH KF PRHG +GF P+KRSR+ RG+ ++FPKDDPS+ HLT+F+ YKAGMTH+VR
Sbjct: 50 TNMSHCKFEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVR 109
Query: 207 EPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF 386
+ DRPGSK+NKKE+VE VTI+E PPMV VG+VGY +TP G + + TVWA H S + RRRF
Sbjct: 110 DVDRPGSKVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRF 169
Query: 387 YKNWYXXXXXXXXXXXXXWQDKLGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQ--- 557
YKNW + GR + + K + ++RV+AHTQ++ L+ +
Sbjct: 170 YKNWKQSAQLAFTKRKQFARTTEGRLAEARTLKAFEKKADIIRVVAHTQLRKLRNNRVGV 229
Query: 558 KKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRW 737
KKAH+ EIQ+NGGTI K++ A+ LEK + +DSVF Q E D RW
Sbjct: 230 KKAHVSEIQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRW 289
Query: 738 HTKXLPRKTHKGLXKVACIGAWHPSRVSFTVXRAGQKG 851
LPRKTH+GL KVACIGAWHPSRV +TV RAGQ G
Sbjct: 290 GVACLPRKTHRGLRKVACIGAWHPSRVMYTVARAGQHG 327
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 262 bits (641), Expect = 1e-68
Identities = 114/168 (67%), Positives = 135/168 (80%)
Frame = +3
Query: 33 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 212
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 392
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 393 NWYXXXXXXXXXXXXXWQDKLGRKSIEKDFKKMIRYCSVVRVIAHTQM 536
NW WQD+ G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
Score = 93.1 bits (221), Expect = 8e-18
Identities = 43/64 (67%), Positives = 45/64 (70%)
Frame = +3
Query: 660 VFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPRKTHKGLXKVACIGAWHPSRVSFTVXRA 839
V A +MID I SRWHTK LPRKTHKGL KVACIGAWHPSRV+FTV RA
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARA 221
Query: 840 GQKG 851
GQKG
Sbjct: 222 GQKG 225
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 245 bits (600), Expect = 1e-63
Identities = 128/273 (46%), Positives = 170/273 (62%)
Frame = +3
Query: 33 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 212
MS+R FSAPRHGS+GF P+K S H GKVK FPKDD SKPVHLT F+ +KA MTH++++
Sbjct: 1 MSYRNFSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKV 60
Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 392
DRP SK+NKKE+VE V I+ETPPMV +G+VGYIE P GL V+AEH+S ++ FYK
Sbjct: 61 DRPESKMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAEHISGKSKKCFYK 120
Query: 393 NWYXXXXXXXXXXXXXWQDKLGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 572
NW+ +G++ +E +FK M +YC V+ ++AHTQM LL QKKAH+
Sbjct: 121 NWHSEKKASTKYF------DMGKRQLEMEFKSMKKYCQVICIVAHTQMCLLSLHQKKAHL 174
Query: 573 MEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXL 752
MEIQ+ G + W RE + QDE+ID I +
Sbjct: 175 MEIQVMG---HCGLSW-REAVN----------QDEIIDVIKETKGNGYKGVTRVDIQRNC 220
Query: 753 PRKTHKGLXKVACIGAWHPSRVSFTVXRAGQKG 851
P + +G K+ C+GAWHP+RV+F+V + GQKG
Sbjct: 221 PERPIEGCPKL-CVGAWHPARVTFSVAQVGQKG 252
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 163 bits (396), Expect = 5e-39
Identities = 96/235 (40%), Positives = 132/235 (56%)
Frame = +3
Query: 90 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTII 269
K S +H+GKV FPKD SKPV+L+AF+GY+AGMTHVVR+ DRPGSK++KKE+VE VTI+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFLGYQAGMTHVVRKVDRPGSKVHKKEVVEVVTIV 60
Query: 270 ETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQD 449
ET P + VG VG ET GL+ +V+A+H+S +C+R K Y W+
Sbjct: 61 ETMPFMTVGTVGCTETIWGLQTFKSVFAKHISNECKRTGIK--YKTNTSPNTKARSSWR- 117
Query: 450 KLGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWARE 629
G ++ TQM LL QKKAH+ E Q+N G + K+ WA +
Sbjct: 118 --GTSAL-------------------TQMCLLPLCQKKAHLTESQVNRGPVA-KLDWAHK 155
Query: 630 HLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPRKTHKGLXKVACI 794
LE+ +PV+ +F + I S W+TK +P KTH+ + ACI
Sbjct: 156 KLEQQVPVNHIFRVRRLF-VIGTTKGKHYKGISSHWYTKKVPWKTHQEFHEAACI 209
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 130 bits (315), Expect = 3e-29
Identities = 90/279 (32%), Positives = 132/279 (47%), Gaps = 10/279 (3%)
Frame = +3
Query: 45 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 224
K PR GS+GF P+KR++ +++++PK+ V + F GYKAGMTH++ D PG
Sbjct: 3 KVHRPRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
Query: 225 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSED---CRRRFYK- 392
N KEI VTIIETPP+ G+ Y GL V D + R K
Sbjct: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRMGYLGLETATEVIVPDFPLDNYPAKERKGKP 118
Query: 393 ----NWYXXXXXXXXXXXXXWQDKLGRKSIEKDFKKMIRYCSVV--RVIAHTQMKLLKQR 554
+Y + ++ + + + + MI+ +V R I TQ ++K +
Sbjct: 119 KPKMTFYKLLERRIATLPKNYTQEMFEQKLGQ-LEDMIKEGEIVDVRAIVATQPWVIKLK 177
Query: 555 QKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSR 734
KK +ME + G ++E+K + +E L K + V V + E++D I R
Sbjct: 178 -KKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKR 236
Query: 735 WHTKXLPRKTHKGLXKVACIGAWHPSRVSFTVXRAGQKG 851
W K K KG KV IG WHP+RV +TV AGQ G
Sbjct: 237 WGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMG 275
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 124 bits (298), Expect = 4e-27
Identities = 85/269 (31%), Positives = 135/269 (50%), Gaps = 4/269 (1%)
Frame = +3
Query: 57 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 236
PR GS+ F P+KR++R +++++P++D V L AF YKAGM+H + D P S
Sbjct: 8 PRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPKSPNA 64
Query: 237 KKEIVEAVTIIETPPM-VC-VGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXX 410
+E+ +TI+E PP+ VC + V G E + L L VWA+++ ++ R+
Sbjct: 65 GQEVFTPITILEAPPINVCAIRVYGRNERNY-LTTLTEVWADNLDKELERKI-------- 115
Query: 411 XXXXXXXXXXWQDKLGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLN 590
K RK++E D + + VRV+ HT KL +KK I+EI++
Sbjct: 116 ---------KLPKKEDRKTVE-DLEALKDKIEDVRVLVHTNPKLTCLPKKKPEILEIRIG 165
Query: 591 GGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTK-XLPRKTH 767
G IE+++ +A+E L K + + VF + E++D I RW K +
Sbjct: 166 GKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRWGVKIQFGKHAR 225
Query: 768 KGLXK-VACIGAWHPSRVSFTVXRAGQKG 851
KG+ + V IG W P V ++V GQ G
Sbjct: 226 KGVGRHVGSIGPWQPKMVMWSVPMPGQMG 254
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 120 bits (288), Expect = 6e-26
Identities = 101/278 (36%), Positives = 138/278 (49%), Gaps = 5/278 (1%)
Frame = +3
Query: 33 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 212
M RK APR GS+GF P+KR+ R +VK +P+ D KPV L AF+GY+AGMTHV
Sbjct: 1 MGARKKRAPRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVD 59
Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPH-GLRALLTVWAEHMSE-DCRRRF 386
DRPG + KEI VTI+ETPPM V Y P+ G +L WA+ E + +RR
Sbjct: 60 DRPGRPTSGKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRRI 119
Query: 387 YKNWYXXXXXXXXXXXXXWQDKLGRKSIEKDFKKMIRYCSVVRVIAHTQMKLL-KQRQKK 563
DK+ KS+E+ K VR+IA +Q KL +KK
Sbjct: 120 ------------STLGSFDTDKM-LKSLEERLDK----AEDVRLIAASQPKLAGGLSKKK 162
Query: 564 AHIMEIQLNGGTIEDKV-KWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWH 740
++EI++ G + K+ +A++ L I V+ VF + +++D I RW
Sbjct: 163 PDLLEIKVGGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIKRWG 222
Query: 741 TKXLPRKTHKGLXKVACIGAWHPSRVSF-TVXRAGQKG 851
K LPR HK IGA R +F +AGQ G
Sbjct: 223 VKELPR-WHKHRKGSRRIGARSHGRSTFWETPQAGQTG 259
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 117 bits (281), Expect = 4e-25
Identities = 80/272 (29%), Positives = 129/272 (47%), Gaps = 7/272 (2%)
Frame = +3
Query: 57 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 236
P+ GSMGF P+KR+ R G++ ++P+ + S+ + + F G+KAGMTHV+ P S
Sbjct: 7 PKRGSMGFSPRKRAIRPFGRITSWPETESSE-IRVQGFAGWKAGMTHVLMRDTNPHSTSA 65
Query: 237 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMS--EDCRRRFYKNWYXXX 410
+EI +AVT++E PPM + V GY TP+G++ +WA+ S + RF
Sbjct: 66 GQEIRKAVTVVEVPPMKVLAVRGYHMTPYGMQTAGEIWADSSSGPDGLMPRFANQTRGDR 125
Query: 411 XXXXXXXXXXWQDKLGRK--SIEKDFKKMIRYCSV--VRVIAHTQMKLLKQRQKKAH-IM 575
++ + + D + ++ VR+I TQ L+K K IM
Sbjct: 126 DIEEGRKPAKRAGRIPVREGGMNGDALAALTDSNLCEVRLIVATQPALVKSVPSKTPVIM 185
Query: 576 EIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLP 755
E+ L GG K++WA E L I +D V+ + +D + R+ K L
Sbjct: 186 EVGLVGGDTGAKLEWAHERLGGEIGIDDVYEAGKELDVVGITKGKGWQGVIKRFGVKLLS 245
Query: 756 RKTHKGLXKVACIGAWHPSRVSFTVXRAGQKG 851
K K ++ +G + V T+ +AGQ G
Sbjct: 246 HKNSKRRRQIGNMGDFGTGYVRKTIRQAGQMG 277
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 114 bits (274), Expect = 3e-24
Identities = 83/266 (31%), Positives = 121/266 (45%), Gaps = 1/266 (0%)
Frame = +3
Query: 57 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 236
P+ GSMGF P+KR+ R G+VK++P+ D S V + F G+KAGMTHV+ PGS
Sbjct: 7 PKKGSMGFGPRKRANRPYGRVKSWPETD-SDEVRVQGFAGWKAGMTHVMMRDLNPGSPSA 65
Query: 237 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 416
E+ +AVT++E PPM + V GY TP+G + WA S D +
Sbjct: 66 GAEVRKAVTVVEVPPMRVLAVRGYKMTPYGKQTAGEAWA---SADKLSDVIPSLPRRIPE 122
Query: 417 XXXXXXXXWQDKLGRKSIEKDFKKMIRYCSVVRVIAHTQM-KLLKQRQKKAHIMEIQLNG 593
DKL + + VR+I +Q K+ K IME+ L G
Sbjct: 123 RKEHDANAHLDKLRESDLAE-----------VRLIVSSQPDKVSAVGSKSPEIMEMGLTG 171
Query: 594 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPRKTHKG 773
G + ++ WA E L + + ++ VF ID I R+ K L K K
Sbjct: 172 GDLGAQLDWAAEKLGEELGIEDVFESGSDIDVIGVTKGYGNQGVVRRFGVKLLSHKNSKR 231
Query: 774 LXKVACIGAWHPSRVSFTVXRAGQKG 851
++ +G + V T+ +AGQ G
Sbjct: 232 RRQIGNMGDFGTGYVRKTIRQAGQTG 257
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 109 bits (263), Expect = 7e-23
Identities = 80/268 (29%), Positives = 119/268 (44%), Gaps = 3/268 (1%)
Frame = +3
Query: 57 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 236
PR GS+ F P+KR+ R +++++P ++ V + F GYKAGMTH + D P S
Sbjct: 12 PRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTE 68
Query: 237 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 416
+EI VTI++ PPM + Y TP G R + WAE E R +
Sbjct: 69 GEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAEIPEELEMDRV----FTVPKD 124
Query: 417 XXXXXXXXWQDKLGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 596
++ + +E+ +RVI TQ K +KK +ME ++ G
Sbjct: 125 GEAGDLDKIEELVDEGIVEE-----------IRVIVATQPKKAGVPKKKPDVMEYRIGGK 173
Query: 597 TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPRKT---H 767
+ ++ ++A E L + I VF + E++D RW RKT
Sbjct: 174 DVRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQRKQ 233
Query: 768 KGLXKVACIGAWHPSRVSFTVXRAGQKG 851
KG + IG PSRV +TV AGQ G
Sbjct: 234 KG-RHIGSIGPITPSRVRWTVPMAGQVG 260
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 108 bits (260), Expect = 2e-22
Identities = 77/274 (28%), Positives = 126/274 (45%), Gaps = 1/274 (0%)
Frame = +3
Query: 33 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 212
M RK +PR GS+ + P+ R++ +++A+PK D +P + A G+KAG +V
Sbjct: 1 MGARKRHSPRRGSLAYSPRVRAKSMEARIRAWPKLDSEEP-KILAHCGFKAGCVQIVSID 59
Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF-Y 389
DR K++V T++ TPP++ +G+ GY + GL A V+AE + + +
Sbjct: 60 DREKVPNAGKQLVSLGTVLVTPPVLILGIRGYSKDHDGLHAEFDVYAEDIPKSIAKEISL 119
Query: 390 KNWYXXXXXXXXXXXXXWQDKLGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAH 569
KN + + + EK KK+ ++V I+ + L QKK +
Sbjct: 120 KN----------------KQENALDNAEKSLKKIKEIFAIV-AISPSAAGL---EQKKPY 159
Query: 570 IMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKX 749
I E ++GG I + +E L K I +D +F +D RW+ K
Sbjct: 160 IFEASVSGGDIPKQFAHVKELLGKEIKIDQIFETGASVDVAAITKGKGWQGVLKRWNVKK 219
Query: 750 LPRKTHKGLXKVACIGAWHPSRVSFTVXRAGQKG 851
K+ K + +V +G P V +TV RAGQ G
Sbjct: 220 KQHKSRKTVREVGSLGPISPQSVMYTVPRAGQFG 253
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 103 bits (248), Expect = 4e-21
Identities = 85/294 (28%), Positives = 135/294 (45%), Gaps = 43/294 (14%)
Frame = +3
Query: 33 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFP------------------KDDPSKPVH 158
M HRK+SAPRHGS+G P+KR+ + +++++P K KPV
Sbjct: 1 MGHRKYSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV- 59
Query: 159 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGY-IETPHGLRA 335
L ++ YKAGM+H + DRP + + KEI VT+++ PP++ +G+ GY I HGL +
Sbjct: 60 LLGYVAYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLS 119
Query: 336 LLTVW---AEHMSEDCRRRFYKNWYXXXXXXXXXXXXXW--------------QDKLGRK 464
VW E + E + + N + + G K
Sbjct: 120 FGEVWRSPVEALKELYEKIYSDNPFINLGAKDIVRKYLKGLRKVNPGLVKPEPHSEYGFK 179
Query: 465 SIEKDFKKMIRYCSV-----VRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWARE 629
+E ++K+ + +RVIA T L +KK I+EI++ GGT+ +++ +A +
Sbjct: 180 FLENNWKEKLERLKAAELADIRVIASTIPVLSGIGKKKPEIIEIKIGGGTLSERIDYAEK 239
Query: 630 HLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPR--KTHKGLXKV 785
L + VD VF + + ID I R+ K LPR K KG K+
Sbjct: 240 LLGNYVTVDQVFREGQFIDIIGVTKGKGFQGVIKRFGVKELPRWHKHRKGSRKI 293
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 102 bits (244), Expect = 1e-20
Identities = 60/157 (38%), Positives = 82/157 (52%)
Frame = -1
Query: 806 MPSSNAGNFXKTLVCLTG*XLCVPTRSDTFVSFALGDTNAVNHFILGKHRIDRDRFLQMF 627
MPS+N N +T V L+ L P+ DT + GD+N +NHFIL ++R++R+ F ++F
Sbjct: 19 MPSTNTSNLSQTSVGLSWQFLGTPSVGDTLETVTFGDSNDINHFILFENRVNRNFFFKVF 78
Query: 626 SGPFHFVLDGTTVKLDFHNVXXXXXXXXXXXXSVGNDSYNTTVADHLLEIFFY*FASKLI 447
GP +FV DGTTV LDF V V DS N +V + F F +
Sbjct: 79 FGPVNFVGDGTTVDLDFSQVSFLLRQWSLLDLGVSQDSDNRSVLLDSGQFSFNLFGVSGV 138
Query: 446 LPFLTGFSESLLLAFVPVFVEATSTVFRHMLRPDSQQ 336
F F E LL F+PV VE++S F + PDS Q
Sbjct: 139 --FTRVFGEGFLLGFIPVLVESSSDFFTQVFSPDSGQ 173
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 101 bits (243), Expect = 2e-20
Identities = 75/262 (28%), Positives = 121/262 (46%), Gaps = 7/262 (2%)
Frame = +3
Query: 33 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 212
M HRK ++PR GS G P+KRS + +P+ + P L F+GYK GMTHV
Sbjct: 1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMID 59
Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLT-VWAEHMSE--DCRRR 383
D P S N KEI VT++E PP++ + + Y G ++T W+ + D RR
Sbjct: 60 DWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAIDGKGEPNVITEYWSSSSLQFLDITRR 119
Query: 384 FYK-NWYXXXXXXXXXXXXXWQDKLGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQK 560
+ + + + KL I+ + +++ + R++ TQ + + K
Sbjct: 120 IHSISSFLKDDESKKKFDERFNTKL--DLIKSNLDRIVYF----RLLVSTQPRKIPSLGK 173
Query: 561 KA-HIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRW 737
KA ++EIQ+ GG + ++ +A L K I + VF + ++ID + R+
Sbjct: 174 KAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRY 233
Query: 738 HTKXLPR--KTHKGLXKVACIG 797
LPR K KG K+ G
Sbjct: 234 SVVELPRWHKHRKGSRKIGTRG 255
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 101 bits (242), Expect = 2e-20
Identities = 78/267 (29%), Positives = 121/267 (45%), Gaps = 2/267 (0%)
Frame = +3
Query: 57 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 236
PR GS +YP+KR+R +V+ +P++ F GYK GM HV+ S
Sbjct: 7 PRRGSRAYYPRKRARSIVARVRRWPQNREG----FLGFAGYKVGMLHVIGVEMNKNSPFY 62
Query: 237 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 416
+E A T+IE PP+ V V Y +TP+G + L VWA+ + +D R F
Sbjct: 63 GQERFYAATVIEVPPLKVVAVRVYEKTPYGKKTLCEVWAKDLPKDLERVF---------- 112
Query: 417 XXXXXXXXWQDKLGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 596
+D+ + K +++ S VRV+A TQ +L +KK ++EI + GG
Sbjct: 113 ------PLPKDQSYHEEQLKKLEEVKSRVSEVRVLAATQPRLSGLGKKKPELIEIAV-GG 165
Query: 597 TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPR--KTHK 770
E + A E L K + + VF + + ID I R+ + +PR K K
Sbjct: 166 PPEKALSLALEKLGKDLTISDVFKEGDYIDVIAVTKGKGFQGSVKRFGVEEMPRWHKHRK 225
Query: 771 GLXKVACIGAWHPSRVSFTVXRAGQKG 851
G ++ +G P+ + F GQ G
Sbjct: 226 GHSRIGSVGPQKPA-IMFYTPFPGQLG 251
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 101 bits (241), Expect = 3e-20
Identities = 71/266 (26%), Positives = 122/266 (45%)
Frame = +3
Query: 54 APRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKI 233
APR GSMGF+P+KR+ R ++K +PK + KP+ AF YK GMTH + I
Sbjct: 8 APRRGSMGFWPRKRASRIYPRIKTWPKIEEIKPL---AFAAYKVGMTHTI-------LNI 57
Query: 234 NKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXX 413
N + + VT++E P ++ +G Y + L+ + +++ + + R+ K
Sbjct: 58 NGERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPK------- 110
Query: 414 XXXXXXXXXWQDKLGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNG 593
+++K ++ F V++I TQ +K + K I +I + G
Sbjct: 111 ----LKNYNFEEK------KEQFLSKADNADEVKIIVSTQPWKIKLK-KTPEIFDIPIGG 159
Query: 594 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPRKTHKG 773
+ K+++A L K + ++ VF + + +D I R+H K+ KG
Sbjct: 160 SDVNKKLEYALSLLGKELSINDVFKEGQYVDVIAVTKGKGFQGVIKRFHVHRRQHKSEKG 219
Query: 774 LXKVACIGAWHPSRVSFTVXRAGQKG 851
+ KV IG+ P R+ TV GQ G
Sbjct: 220 VRKVGAIGSRGPGRIFPTVPMPGQMG 245
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 100 bits (240), Expect = 4e-20
Identities = 83/270 (30%), Positives = 119/270 (44%), Gaps = 5/270 (1%)
Frame = +3
Query: 57 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 236
PR GSMGF P+KR+ + ++P DD V L F GYKAGMTHVV D+ +
Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTE 64
Query: 237 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 416
E VT++ETPPM V Y +TP+G + L VWA+ E R
Sbjct: 65 GMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL---------- 114
Query: 417 XXXXXXXXWQDKLGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKK-AHIMEIQLNG 593
D+L ++++ + IR VI HT KK +ME ++ G
Sbjct: 115 -SVPDEGGDTDEL-IEALDTEEIADIR------VITHTVPGDTAGVPKKNPDVMETRVGG 166
Query: 594 GTIEDKVKWAREHLEK--PIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHT-KXLPRKT 764
GT+ D++++A + +E VF E D RW K +
Sbjct: 167 GTLADRLEFAADLIEDGGVHAFGDVFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHA 226
Query: 765 HKG-LXKVACIGAWHPSRVSFTVXRAGQKG 851
+G ++ +G W+PSRV TV + GQ G
Sbjct: 227 RQGWRRRIGNLGPWNPSRVRSTVPQQGQTG 256
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 95.9 bits (228), Expect = 1e-18
Identities = 83/286 (29%), Positives = 132/286 (46%), Gaps = 13/286 (4%)
Frame = +3
Query: 33 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 212
M RK APR GS G P+KR+ +V+++P D KP+ AF+GYK GMTHV+
Sbjct: 1 MGARKKEAPRRGSAGLRPRKRAASIVPRVRSWPSIDEVKPL---AFLGYKVGMTHVIMID 57
Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVG--VVGYIETPHGLRALLTVW-------AEHMS 365
DR +EI VT+IETPPMV +G V GY + G AL VW E +
Sbjct: 58 DREHVDTAGQEIFVPVTVIETPPMVVLGARVYGY-DPNRGRYALTEVWRNPSDTIKEKLG 116
Query: 366 EDCRRRFY--KNWYXXXXXXXXXXXXXWQDKLGRKSIEKDFKKMIRYCSVVRVIAHTQMK 539
E+ R++ + ++ K+ K ++ D +K++ ++ I
Sbjct: 117 EEVLRKYLLGMSKRLPHMVEELGPGKGFEFKVPEKELDVDPEKVVGVGLIMSSIPFLAGG 176
Query: 540 LLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXX 719
+ K K I+E+++ G +E +++A+ L + + V+ V + +D I
Sbjct: 177 VSK---KAPDILEVKVGGSPVE-ALEYAKGKLGQLVDVEEVIEAGKFVDVIGVTKGKGFQ 232
Query: 720 XXXSRWHTKXLPR--KTHKGLXKVACIGAWHPSRVSFTVXRAGQKG 851
R+ K LP+ K KG +V +W S+ V + GQ G
Sbjct: 233 GVIKRFGVKELPKWHKHRKGSRRVGA-RSWGKGTSSY-VPQPGQMG 276
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 95.1 bits (226), Expect = 2e-18
Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 5/271 (1%)
Frame = +3
Query: 54 APRHGSMGFYPKKRSRRHRGKVKAFPK--DDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 227
APR GS+G+ P+ R+R + K++ + + D P + F+G+KAGM+H+V DRP S
Sbjct: 6 APRRGSLGYSPRVRARSQKPKMRNWAELGDQPK----IQGFVGFKAGMSHIVMVDDRPHS 61
Query: 228 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSE-DCRRRFYKNWYX 404
EI VTI+E P M G+ Y ++P+G + + W + + KN Y
Sbjct: 62 ATEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAWISDLKMLESLTHLPKNGYK 121
Query: 405 XXXXXXXXXXXXWQDKLGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQ 584
D+ K E K ++ V+ V +++ + +K +ME +
Sbjct: 122 -------------TDEQLAKIAELVKKGVVADLRVMTVTLTSEVSGIP--KKVPELMENR 166
Query: 585 LNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPRKT 764
+ GG + + ++A+ + K + + VFA E++D RW RK
Sbjct: 167 IAGGDMAKRFEFAKSLMGKAVGIKDVFAPGELVDVSAITKGYGTQGPVVRWGIATQKRKH 226
Query: 765 HKGLXK--VACIGAWHPSRVSFTVXRAGQKG 851
+ K V +G W+P R+ + V + GQ G
Sbjct: 227 ARTGKKRHVGNLGPWNPHRIRWQVPQLGQTG 257
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 92.7 bits (220), Expect = 1e-17
Identities = 70/265 (26%), Positives = 116/265 (43%), Gaps = 1/265 (0%)
Frame = +3
Query: 60 RHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINK 239
R GSM +YP+ R++ +++++P + S PV + F G+K GMTHV R S
Sbjct: 8 RRGSMAYYPRVRAKSIEPRIRSWP--EISGPVKVQGFAGFKVGMTHVEMVDYRKTSVTAG 65
Query: 240 KEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXX 419
+ I VT+IE PP+ +G+ Y E G + V E +++ + +K
Sbjct: 66 QPIFVPVTVIEVPPLDVIGIRLYDEDEEGN---MVVVYEKWTQNLDKELFK--------- 113
Query: 420 XXXXXXXWQDKLGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG- 596
K+ K+ Y V ++A + KK I E+++ GG
Sbjct: 114 ----------KITTFKEVKEKPVPETYADVRLIVATRNKDVPGIPSKKPEIFELRIGGGN 163
Query: 597 TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPRKTHKGL 776
+++++ ++A HL K I + + +D + R+ K LPRK K
Sbjct: 164 SVKERFEYATAHLGKTIRFEDFSKPGKFVDVLSVTKGKGFTGHVQRFGVKLLPRKNRKHR 223
Query: 777 XKVACIGAWHPSRVSFTVXRAGQKG 851
+ +G WHP V TV +AGQ G
Sbjct: 224 RMIGTLGPWHPDWVRNTVPQAGQMG 248
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 89.4 bits (212), Expect = 1e-16
Identities = 66/273 (24%), Positives = 119/273 (43%)
Frame = +3
Query: 33 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 212
M HRKFS PR GS+ + P+ R+R +++ +P+ +P L A G+KAG +V
Sbjct: 1 MGHRKFSQPRRGSLAYSPRGRARSMEARIRGWPERQ-GEP-RLLAHAGFKAGCIQIVSID 58
Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 392
DR + K++V T++ TPP+ +G+ GY + +G V+AE + + +
Sbjct: 59 DREHTPNAGKQLVSLGTVLVTPPLHVLGMRGYSKGHYGRHVKFDVFAEDLPREVAKYIVL 118
Query: 393 NWYXXXXXXXXXXXXXWQDKLGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 572
+ GR + E+ + M+ + + I + QK+ +I
Sbjct: 119 -------------------RNGRLNAER-AETMLGGTAEIYGILGVSPRSAGLEQKRPYI 158
Query: 573 MEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXL 752
E + GG+++++ + ++ L K + V +D R K
Sbjct: 159 FEAPVRGGSMKERFAYLKDLLGKTVKASDVLEPGAGVDVAAITKGKGWQGVIQRMGAKRK 218
Query: 753 PRKTHKGLXKVACIGAWHPSRVSFTVXRAGQKG 851
K+ K + ++ +G P V +TV RAGQ G
Sbjct: 219 QHKSRKTVRELGSLGPISPQNVMYTVPRAGQMG 251
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 89.0 bits (211), Expect = 1e-16
Identities = 46/121 (38%), Positives = 72/121 (59%)
Frame = +3
Query: 489 MIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFA 668
+I++ + R + T +K +KK + E + GG+ + K+++ + K I ++S+F
Sbjct: 136 IIKHSVIFRFLCCTFIKTNSMIKKK-YFFETDIIGGSPKMKLEFWLKLNNKKIYINSIFH 194
Query: 669 QDEMIDCIXXXXXXXXXXXXSRWHTKXLPRKTHKGLXKVACIGAWHPSRVSFTVXRAGQK 848
++++ID I SRW LPRKTH+GL KVACIG W PSRV++T+ RAGQK
Sbjct: 195 ENDIIDAIGITKGHGTKGVVSRWGITRLPRKTHRGLRKVACIGPWTPSRVAWTISRAGQK 254
Query: 849 G 851
G
Sbjct: 255 G 255
Score = 68.5 bits (160), Expect = 2e-10
Identities = 39/105 (37%), Positives = 56/105 (53%)
Frame = +3
Query: 33 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 212
MSHRKF PR GS+GF PKKRS R K + + +++ F K THV+R
Sbjct: 1 MSHRKFEHPRIGSLGFLPKKRSNRIFPSSKTYKEIIHIYYPYISQFASLKVASTHVLRIC 60
Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTV 347
+ SK + I++ VT++E PP+ VG+ Y + L L T+
Sbjct: 61 NIVSSKSYQNPIIDEVTLMECPPIEVVGLCAYALSSGHLVKLKTI 105
>UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3; n=1;
Mus musculus|Rep: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3 - Mus
musculus (Mouse)
Length = 109
Score = 39.9 bits (89), Expect = 0.081
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +3
Query: 105 HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKK 242
HR + K FPK+D K HL F+ +A MT+ V E +R G K +K
Sbjct: 8 HRIQAKDFPKEDLPKSAHLIVFLVSRAVMTYFVWEINRSGPKWTRK 53
>UniRef50_A7TI46 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 253
Score = 36.7 bits (81), Expect = 0.76
Identities = 21/77 (27%), Positives = 41/77 (53%)
Frame = +3
Query: 453 LGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREH 632
L RKSIE + + IR+ +V I +K++++++ + E +L GT + + A
Sbjct: 135 LARKSIEYNTYQSIRFKTVFPDIVEENIKVIEEKKNNQNEKEDELLAGTKKQEDAIANAA 194
Query: 633 LEKPIPVDSVFAQDEMI 683
EKPI ++ + ++ I
Sbjct: 195 KEKPISLEEILDPEDRI 211
>UniRef50_Q69NC6 Cluster: Putative uncharacterized protein
OJ1742_G01.32; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1742_G01.32 - Oryza sativa subsp. japonica (Rice)
Length = 100
Score = 35.5 bits (78), Expect = 1.7
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +2
Query: 239 ERDRGGCHHHRDSSDGLCRCCWIH*DPSWTTRSVD 343
E DRG CHH+ S GLCR C + P+ T V+
Sbjct: 36 EGDRGCCHHYLTGSPGLCRRCPLRAHPAATGFEVE 70
>UniRef50_Q1EYM9 Cluster: Purine catabolism PurC-like; n=2;
Clostridiaceae|Rep: Purine catabolism PurC-like -
Clostridium oremlandii OhILAs
Length = 551
Score = 34.7 bits (76), Expect = 3.1
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +3
Query: 504 SVVRVIAHTQMKLLKQRQKKAH--IMEIQLNGGTIEDKVKWAREHLEKPI 647
SV + I + Q LL QR +K H +M + L GG+IED + RE+L P+
Sbjct: 126 SVFKEIFNKQTSLL-QRLEKVHEQLMNVVLEGGSIEDIGRVTRENLRNPL 174
>UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1205
Score = 34.3 bits (75), Expect = 4.0
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 90 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH--VVREPDRPGSKINKKEIVEAVT 263
K +++ K+K +++ K + AFI A ++ +R DR ++N I + T
Sbjct: 19 KANKKKAAKLKKLEQNEALKGRNPKAFISQAAYASNRLTIRNLDREAKRVNLPVIDRSGT 78
Query: 264 IIETPPMVCVGVVG 305
+ETPP V + VVG
Sbjct: 79 AVETPPYV-IAVVG 91
>UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to
ENSANGP00000006197; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000006197 - Nasonia
vitripennis
Length = 1307
Score = 33.9 bits (74), Expect = 5.3
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -3
Query: 417 PSSCICTSFCRSDVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSEESR 268
PS+ I T SD++ L P QS+ V+ +GS+ HR K SEE R
Sbjct: 840 PSASINTKKYESDIEILSN---PSQSSIEVLDDGSKSTTPHRKKSSEERR 886
>UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1;
Sulfurovum sp. NBC37-1|Rep: Putative uncharacterized
protein - Sulfurovum sp. (strain NBC37-1)
Length = 135
Score = 33.9 bits (74), Expect = 5.3
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 441 WQDKLGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 596
WQD K I+KD+ + YC +R+ H +L ++ K HI+ + G
Sbjct: 29 WQDNSDAKYIQKDWNGAMLYCRQLRLAGHNDWRLPSIKELK-HILSTEPRDG 79
>UniRef50_Q9MAP1 Cluster: Putative F-box protein At1g33020; n=4;
Arabidopsis thaliana|Rep: Putative F-box protein
At1g33020 - Arabidopsis thaliana (Mouse-ear cress)
Length = 518
Score = 33.5 bits (73), Expect = 7.1
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -2
Query: 658 ESTGIGFSRCSLAHFTLSSMVPPLSWISIM*AFFCRCFNSFI 533
E TG+ S+C +H +S + PL W+SI+ F + SF+
Sbjct: 474 EFTGVKTSKCDTSHLQVSCELSPLCWLSIL-LFLVMVYMSFM 514
>UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsis
invicta virus 1|Rep: Structural polyprotein - Solenopsis
invicta virus 1
Length = 1137
Score = 33.1 bits (72), Expect = 9.3
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 284 HRRSLDDGDSLHDLFLVDF*TGTVRFSNHVGHTGLITDKSSQMNRFARVV 135
HRR + ++ D+ LVD T++ VG GLITD +S ++ A V
Sbjct: 475 HRRDVTAARAIADMILVDERDATMQVQAEVGGQGLITDIASTVSAVAGAV 524
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 865,428,970
Number of Sequences: 1657284
Number of extensions: 17798879
Number of successful extensions: 42307
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 40625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42267
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76652910257
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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