Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_C01
(841 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 355 8e-97
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 327 2e-88
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 257 3e-67
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 248 2e-64
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 219 7e-56
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 141 2e-32
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 98 2e-19
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 94 3e-18
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 92 2e-17
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 90 6e-17
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 89 1e-16
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 87 4e-16
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 87 7e-16
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 79 1e-13
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 75 3e-12
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 75 3e-12
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 72 2e-11
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 71 3e-11
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 71 4e-11
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 70 8e-11
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 68 3e-10
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 68 3e-10
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 63 1e-08
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 62 2e-08
UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN full-le... 40 0.078
UniRef50_Q69NC6 Cluster: Putative uncharacterized protein OJ1742... 35 2.2
UniRef50_Q1EYM9 Cluster: Purine catabolism PurC-like; n=2; Clost... 35 2.9
UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1; ... 34 3.9
UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1; ... 34 5.1
UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to ENSANGP000... 33 6.8
UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsi... 33 8.9
UniRef50_A7TI46 Cluster: Putative uncharacterized protein; n=1; ... 33 8.9
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 355 bits (873), Expect = 8e-97
Identities = 162/271 (59%), Positives = 202/271 (74%)
Frame = +2
Query: 29 VAQKNFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
++ + F P HGS+GF P+KRS RHRGKVK+FPKDDPSKPVHLTAF+GYKAGMTH+VRE
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 388
DRPGSK+NKKE+VEAVTI+ETPPMV VG+VGY+ETP GLR TV+AEH+S++C+RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 389 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 568
NW+ WQDE G+K +EKDF M +YC V+RVIAHTQM+LL RQKKAH+
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 569 MEIQLNGGTIEDKVKWAREHLEKPIPGRFCVCPR*NG*LHWCHQGQRIQRCHFSLAHKEA 748
MEIQ+NGGT+ +K+ WARE LE+ +P + +G+ + K+
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 749 TRKTHKGLXKVACIGAWHPSRVSXTVXRAGQ 841
RKTH+GL KVACIGAWHP+RV+ +V RAGQ
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQ 271
Score = 43.2 bits (97), Expect = 0.008
Identities = 21/48 (43%), Positives = 26/48 (54%)
Frame = +3
Query: 648 VDSVFAQDEMVDCIXXXXXXXXXXXXSRWHTKKLPVRHTRVLXKLPAL 791
V+ VF QDEM+D I SRWHTKKLP + R L K+ +
Sbjct: 207 VNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACI 254
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 327 bits (804), Expect = 2e-88
Identities = 151/271 (55%), Positives = 192/271 (70%)
Frame = +2
Query: 29 VAQKNFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
++ + F P HG +GF P KRS RHRGKVK +P+DDPS+PVHLTAF+GYKAGMTH +RE
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 388
RPG KI+K+E VEAVTI+ETPP+V VGVVGY+ TP GLR+ T++AEH+S++CRRRFYK
Sbjct: 61 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
Query: 389 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 568
+W+ W+D G+K ++KDF M +YC V+RVI HTQMKLL RQKKAHI
Sbjct: 121 DWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHI 180
Query: 569 MEIQLNGGTIEDKVKWAREHLEKPIPGRFCVCPR*NG*LHWCHQGQRIQRCHFSLAHKEA 748
MEIQLNGGT+ +KV WA+ LEK +P + +G+ ++ K+
Sbjct: 181 MEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKL 240
Query: 749 TRKTHKGLXKVACIGAWHPSRVSXTVXRAGQ 841
RKTHKGL KVACIGAWHP+RV ++ RAGQ
Sbjct: 241 PRKTHKGLRKVACIGAWHPARVGCSIARAGQ 271
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 257 bits (629), Expect = 3e-67
Identities = 131/271 (48%), Positives = 172/271 (63%), Gaps = 5/271 (1%)
Frame = +2
Query: 44 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 223
F+HP HG +GF P+KRSR+ RG+ ++FPKDDPS+ HLT+F+ YKAGMTH+VR+ DRPGS
Sbjct: 57 FEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVRDVDRPGS 116
Query: 224 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 403
K+NKKE+VE VTI+E PPMV VG+VGY +TP G + + TVWA H S + RRRFYKNW
Sbjct: 117 KVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRFYKNWKQS 176
Query: 404 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQ---KKAHIME 574
+ GR + + K + ++RV+AHTQ++ L+ + KKAH+ E
Sbjct: 177 AQLAFTKRKQFARTTEGRLAEARTLKAFEKKADIIRVVAHTQLRKLRNNRVGVKKAHVSE 236
Query: 575 IQLNGGTIEDKVKWAREHLEKPIPGRFCVCPR*NG*LHWC--HQGQRIQRCHFSLAHKEA 748
IQ+NGGTI K++ A+ LEK + R + + C +G
Sbjct: 237 IQINGGTIAQKIELAKSLLEKEV--RIDSVFQQSEACDVCAVTKGHGFTGVVKRWGVACL 294
Query: 749 TRKTHKGLXKVACIGAWHPSRVSXTVXRAGQ 841
RKTH+GL KVACIGAWHPSRV TV RAGQ
Sbjct: 295 PRKTHRGLRKVACIGAWHPSRVMYTVARAGQ 325
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 248 bits (606), Expect = 2e-64
Identities = 107/168 (63%), Positives = 130/168 (77%)
Frame = +2
Query: 29 VAQKNFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
++ + F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 388
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 389 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 532
NW WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
Score = 62.1 bits (144), Expect = 2e-08
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = +2
Query: 740 KEATRKTHKGLXKVACIGAWHPSRVSXTVXRAGQ 841
K+ RKTHKGL KVACIGAWHPSRV+ TV RAGQ
Sbjct: 190 KKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQ 223
Score = 33.1 bits (72), Expect = 8.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 657 VFAQDEMVDCIXXXXXXXXXXXXSRWHTKKLPVRHTRVLXKLPAL 791
V A +M+D I SRWHTKKLP + + L K+ +
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACI 206
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 219 bits (535), Expect = 7e-56
Identities = 117/271 (43%), Positives = 166/271 (61%)
Frame = +2
Query: 29 VAQKNFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
++ +NF P HGS+GF P+K S H GKVK FPKDD SKPVHLT F+ +KA MTH++++
Sbjct: 1 MSYRNFSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKV 60
Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 388
DRP SK+NKKE+VE V I+ETPPMV +G+VGYIE P GL V+AEH+S ++ FYK
Sbjct: 61 DRPESKMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAEHISGKSKKCFYK 120
Query: 389 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 568
NW+ ++G++ +E +FK M +YC V+ ++AHTQM LL QKKAH+
Sbjct: 121 NWHSEKKASTKYF------DMGKRQLEMEFKSMKKYCQVICIVAHTQMCLLSLHQKKAHL 174
Query: 569 MEIQLNGGTIEDKVKWAREHLEKPIPGRFCVCPR*NG*LHWCHQGQRIQRCHFSLAHKEA 748
MEIQ+ G + W RE + + + NG ++G + R +
Sbjct: 175 MEIQVMG---HCGLSW-REAVNQDEIIDVIKETKGNG-----YKG--VTRVDI---QRNC 220
Query: 749 TRKTHKGLXKVACIGAWHPSRVSXTVXRAGQ 841
+ +G K+ C+GAWHP+RV+ +V + GQ
Sbjct: 221 PERPIEGCPKL-CVGAWHPARVTFSVAQVGQ 250
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 141 bits (341), Expect = 2e-32
Identities = 82/187 (43%), Positives = 111/187 (59%)
Frame = +2
Query: 86 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTII 265
K S +H+GKV FPKD SKPV+L+AF+GY+AGMTHVVR+ DRPGSK++KKE+VE VTI+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFLGYQAGMTHVVRKVDRPGSKVHKKEVVEVVTIV 60
Query: 266 ETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQD 445
ET P + VG VG ET GL+ +V+A+H+S +C+R K Y W+
Sbjct: 61 ETMPFMTVGTVGCTETIWGLQTFKSVFAKHISNECKRTGIK--YKTNTSPNTKARSSWR- 117
Query: 446 ELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWARE 625
G ++ TQM LL QKKAH+ E Q+N G + K+ WA +
Sbjct: 118 --GTSAL-------------------TQMCLLPLCQKKAHLTESQVNRGPVA-KLDWAHK 155
Query: 626 HLEKPIP 646
LE+ +P
Sbjct: 156 KLEQQVP 162
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 98.3 bits (234), Expect = 2e-19
Identities = 83/273 (30%), Positives = 124/273 (45%), Gaps = 10/273 (3%)
Frame = +2
Query: 53 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 232
P GS+GF P+KR++ +++++PK+ V + F GYKAGMTH++ D PG N
Sbjct: 7 PRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG-LTN 62
Query: 233 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSED---CRRRFYK----- 388
KEI VTIIETPP+ G+ Y GL V D + R K
Sbjct: 63 GKEIFMPVTIIETPPLRVFGIRAYRMGYLGLETATEVIVPDFPLDNYPAKERKGKPKPKM 122
Query: 389 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSV--VRVIAHTQMKLLKQRQKKA 562
+Y + E+ + + + + MI+ + VR I TQ ++K + KK
Sbjct: 123 TFYKLLERRIATLPKNYTQEMFEQKLGQ-LEDMIKEGEIVDVRAIVATQPWVIKLK-KKP 180
Query: 563 HIMEIQLNGGTIEDKVKWAREHLEKPIPGRFCVCPR*NG*LHWCHQGQRIQRCHFSLAHK 742
+ME + G ++E+K + +E L K + + + +G+ Q K
Sbjct: 181 EVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIK 240
Query: 743 EATRKTHKGLXKVACIGAWHPSRVSXTVXRAGQ 841
K KG KV IG WHP+RV TV AGQ
Sbjct: 241 LRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQ 273
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 94.3 bits (224), Expect = 3e-18
Identities = 64/200 (32%), Positives = 99/200 (49%), Gaps = 7/200 (3%)
Frame = +2
Query: 53 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 232
P GSMGF P+KR+ R G++ ++P+ + S+ + + F G+KAGMTHV+ P S
Sbjct: 7 PKRGSMGFSPRKRAIRPFGRITSWPETESSE-IRVQGFAGWKAGMTHVLMRDTNPHSTSA 65
Query: 233 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMS--EDCRRRFYKNWYXXX 406
+EI +AVT++E PPM + V GY TP+G++ +WA+ S + RF
Sbjct: 66 GQEIRKAVTVVEVPPMKVLAVRGYHMTPYGMQTAGEIWADSSSGPDGLMPRFANQTRGDR 125
Query: 407 XXXXXXXXXXWQDELGRK--SIEKDFKKMIRYCSV--VRVIAHTQMKLLKQRQKKAH-IM 571
+ + + D + ++ VR+I TQ L+K K IM
Sbjct: 126 DIEEGRKPAKRAGRIPVREGGMNGDALAALTDSNLCEVRLIVATQPALVKSVPSKTPVIM 185
Query: 572 EIQLNGGTIEDKVKWAREHL 631
E+ L GG K++WA E L
Sbjct: 186 EVGLVGGDTGAKLEWAHERL 205
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 91.9 bits (218), Expect = 2e-17
Identities = 64/203 (31%), Positives = 106/203 (52%), Gaps = 2/203 (0%)
Frame = +2
Query: 41 NFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 220
N P GS+ F P+KR++R +++++P++D V L AF YKAGM+H + D P
Sbjct: 4 NINRPRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPK 60
Query: 221 SKINKKEIVEAVTIIETPPM-VC-VGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 394
S +E+ +TI+E PP+ VC + V G E + L L VWA+++ ++ R+
Sbjct: 61 SPNAGQEVFTPITILEAPPINVCAIRVYGRNERNY-LTTLTEVWADNLDKELERKI---- 115
Query: 395 YXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIME 574
+ RK++E D + + VRV+ HT KL +KK I+E
Sbjct: 116 -------------KLPKKEDRKTVE-DLEALKDKIEDVRVLVHTNPKLTCLPKKKPEILE 161
Query: 575 IQLNGGTIEDKVKWAREHLEKPI 643
I++ G IE+++ +A+E L K +
Sbjct: 162 IRIGGKDIEERLNYAKEILGKQL 184
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 90.2 bits (214), Expect = 6e-17
Identities = 45/99 (45%), Positives = 61/99 (61%)
Frame = +2
Query: 53 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 232
P GSMGF P+KR+ R G+VK++P+ D S V + F G+KAGMTHV+ PGS
Sbjct: 7 PKKGSMGFGPRKRANRPYGRVKSWPETD-SDEVRVQGFAGWKAGMTHVMMRDLNPGSPSA 65
Query: 233 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWA 349
E+ +AVT++E PPM + V GY TP+G + WA
Sbjct: 66 GAEVRKAVTVVEVPPMRVLAVRGYKMTPYGKQTAGEAWA 104
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 89.0 bits (211), Expect = 1e-16
Identities = 52/111 (46%), Positives = 67/111 (60%), Gaps = 2/111 (1%)
Frame = +2
Query: 53 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 232
P GS+GF P+KR+ R +VK +P+ D KPV L AF+GY+AGMTHV DRPG +
Sbjct: 9 PRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRPGRPTS 67
Query: 233 KKEIVEAVTIIETPPMVCVGVVGYIETPH-GLRALLTVWAEHMSE-DCRRR 379
KEI VTI+ETPPM V Y P+ G +L WA+ E + +RR
Sbjct: 68 GKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRR 118
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 87.4 bits (207), Expect = 4e-16
Identities = 77/273 (28%), Positives = 121/273 (44%), Gaps = 4/273 (1%)
Frame = +2
Query: 35 QKNFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDR 214
++N P GS+ F P+KR+ R +++++P ++ V + F GYKAGMTH + D
Sbjct: 6 RRNPGRPRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDW 62
Query: 215 PGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 394
P S +EI VTI++ PPM + Y TP G R + WAE E R +
Sbjct: 63 PNSPTEGEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAEIPEELEMDRVF--- 119
Query: 395 YXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIME 574
+EL + I ++ +RVI TQ K +KK +ME
Sbjct: 120 --TVPKDGEAGDLDKIEELVDEGIVEE----------IRVIVATQPKKAGVPKKKPDVME 167
Query: 575 IQLNGGTIEDKVKWAREHLEKPIPGRFCVCPR*NG*LHWCHQGQRIQ----RCHFSLAHK 742
++ G + ++ ++A E L + I + + +G+ Q R ++ +
Sbjct: 168 YRIGGKDVRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDR 227
Query: 743 EATRKTHKGLXKVACIGAWHPSRVSXTVXRAGQ 841
+ RK KG + IG PSRV TV AGQ
Sbjct: 228 KTQRK-QKG-RHIGSIGPITPSRVRWTVPMAGQ 258
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 86.6 bits (205), Expect = 7e-16
Identities = 78/268 (29%), Positives = 116/268 (43%), Gaps = 5/268 (1%)
Frame = +2
Query: 53 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 232
P GSMGF P+KR+ + ++P DD V L F GYKAGMTHVV D+ +
Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTE 64
Query: 233 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 412
E VT++ETPPM V Y +TP+G + L VWA+ E R
Sbjct: 65 GMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL---------- 114
Query: 413 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHT-QMKLLKQRQKKAHIMEIQLNG 589
DEL IE + I + +RVI HT +K +ME ++ G
Sbjct: 115 -SVPDEGGDTDEL----IEALDTEEI---ADIRVITHTVPGDTAGVPKKNPDVMETRVGG 166
Query: 590 GTIEDKVKWAREHLEKPIPGRFCVCPR*NG*LHWC----HQGQRIQRCHFSLAHKEATRK 757
GT+ D++++A + +E F R +G + + + ++
Sbjct: 167 GTLADRLEFAADLIEDGGVHAFGDVFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHA 226
Query: 758 THKGLXKVACIGAWHPSRVSXTVXRAGQ 841
++ +G W+PSRV TV + GQ
Sbjct: 227 RQGWRRRIGNLGPWNPSRVRSTVPQQGQ 254
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 79.0 bits (186), Expect = 1e-13
Identities = 60/197 (30%), Positives = 92/197 (46%)
Frame = +2
Query: 53 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 232
P GS +YP+KR+R +V+ +P++ F GYK GM HV+ S
Sbjct: 7 PRRGSRAYYPRKRARSIVARVRRWPQNREG----FLGFAGYKVGMLHVIGVEMNKNSPFY 62
Query: 233 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 412
+E A T+IE PP+ V V Y +TP+G + L VWA+ + +D R F
Sbjct: 63 GQERFYAATVIEVPPLKVVAVRVYEKTPYGKKTLCEVWAKDLPKDLERVF---------- 112
Query: 413 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 592
+D+ + K +++ S VRV+A TQ +L +KK ++EI + GG
Sbjct: 113 ------PLPKDQSYHEEQLKKLEEVKSRVSEVRVLAATQPRLSGLGKKKPELIEIAV-GG 165
Query: 593 TIEDKVKWAREHLEKPI 643
E + A E L K +
Sbjct: 166 PPEKALSLALEKLGKDL 182
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 74.5 bits (175), Expect = 3e-12
Identities = 44/100 (44%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Frame = +2
Query: 53 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 232
P GS G P+KR+ +V+++P D KP+ AF+GYK GMTHV+ DR
Sbjct: 9 PRRGSAGLRPRKRAASIVPRVRSWPSIDEVKPL---AFLGYKVGMTHVIMIDDREHVDTA 65
Query: 233 KKEIVEAVTIIETPPMVCVG--VVGYIETPHGLRALLTVW 346
+EI VT+IETPPMV +G V GY + G AL VW
Sbjct: 66 GQEIFVPVTVIETPPMVVLGARVYGY-DPNRGRYALTEVW 104
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 74.5 bits (175), Expect = 3e-12
Identities = 70/264 (26%), Positives = 117/264 (44%), Gaps = 1/264 (0%)
Frame = +2
Query: 53 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 232
P GS+ + P+ R++ +++A+PK D +P + A G+KAG +V DR
Sbjct: 9 PRRGSLAYSPRVRAKSMEARIRAWPKLDSEEP-KILAHCGFKAGCVQIVSIDDREKVPNA 67
Query: 233 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF-YKNWYXXXX 409
K++V T++ TPP++ +G+ GY + GL A V+AE + + + KN
Sbjct: 68 GKQLVSLGTVLVTPPVLILGIRGYSKDHDGLHAEFDVYAEDIPKSIAKEISLKN------ 121
Query: 410 XXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNG 589
+ E + EK KK+ ++V I+ + L QKK +I E ++G
Sbjct: 122 ----------KQENALDNAEKSLKKIKEIFAIV-AISPSAAGL---EQKKPYIFEASVSG 167
Query: 590 GTIEDKVKWAREHLEKPIPGRFCVCPR*NG*LHWCHQGQRIQRCHFSLAHKEATRKTHKG 769
G I + +E L K I + + +G+ Q K+ K+ K
Sbjct: 168 GDIPKQFAHVKELLGKEIKIDQIFETGASVDVAAITKGKGWQGVLKRWNVKKKQHKSRKT 227
Query: 770 LXKVACIGAWHPSRVSXTVXRAGQ 841
+ +V +G P V TV RAGQ
Sbjct: 228 VREVGSLGPISPQSVMYTVPRAGQ 251
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 71.7 bits (168), Expect = 2e-11
Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 5/210 (2%)
Frame = +2
Query: 29 VAQKNFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
+ + P GS G P+KRS + +P+ + P L F+GYK GMTHV
Sbjct: 1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMID 59
Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLT-VWAEHMSE--DCRRR 379
D P S N KEI VT++E PP++ + + Y G ++T W+ + D RR
Sbjct: 60 DWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAIDGKGEPNVITEYWSSSSLQFLDITRR 119
Query: 380 FYK-NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQK 556
+ + + + +L I+ + +++ + R++ TQ + + K
Sbjct: 120 IHSISSFLKDDESKKKFDERFNTKL--DLIKSNLDRIVYF----RLLVSTQPRKIPSLGK 173
Query: 557 KA-HIMEIQLNGGTIEDKVKWAREHLEKPI 643
KA ++EIQ+ GG + ++ +A L K I
Sbjct: 174 KAPDLVEIQIGGGEKKSQLDYALNILGKEI 203
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 71.3 bits (167), Expect = 3e-11
Identities = 67/265 (25%), Positives = 112/265 (42%), Gaps = 1/265 (0%)
Frame = +2
Query: 50 HPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKI 229
H GSM +YP+ R++ +++++P + S PV + F G+K GMTHV R S
Sbjct: 6 HSRRGSMAYYPRVRAKSIEPRIRSWP--EISGPVKVQGFAGFKVGMTHVEMVDYRKTSVT 63
Query: 230 NKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXX 409
+ I VT+IE PP+ +G+ Y E G + V E +++ + +K
Sbjct: 64 AGQPIFVPVTVIEVPPLDVIGIRLYDEDEEG---NMVVVYEKWTQNLDKELFKK------ 114
Query: 410 XXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNG 589
E+ K + + Y V ++A + KK I E+++ G
Sbjct: 115 -------ITTFKEVKEKPVPE------TYADVRLIVATRNKDVPGIPSKKPEIFELRIGG 161
Query: 590 G-TIEDKVKWAREHLEKPIPGRFCVCPR*NG*LHWCHQGQRIQRCHFSLAHKEATRKTHK 766
G +++++ ++A HL K I P + +G+ K RK K
Sbjct: 162 GNSVKERFEYATAHLGKTIRFEDFSKPGKFVDVLSVTKGKGFTGHVQRFGVKLLPRKNRK 221
Query: 767 GLXKVACIGAWHPSRVSXTVXRAGQ 841
+ +G WHP V TV +AGQ
Sbjct: 222 HRRMIGTLGPWHPDWVRNTVPQAGQ 246
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 70.9 bits (166), Expect = 4e-11
Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 41/242 (16%)
Frame = +2
Query: 29 VAQKNFQHPXHGSMGFYPKKRSRRHRGKVKAFP------------------KDDPSKPVH 154
+ + + P HGS+G P+KR+ + +++++P K KPV
Sbjct: 1 MGHRKYSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV- 59
Query: 155 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGY-IETPHGLRA 331
L ++ YKAGM+H + DRP + + KEI VT+++ PP++ +G+ GY I HGL +
Sbjct: 60 LLGYVAYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLS 119
Query: 332 LLTVW---AEHMSEDCRRRFYKNWYXXXXXXXXXXXXXW--------------QDELGRK 460
VW E + E + + N + E G K
Sbjct: 120 FGEVWRSPVEALKELYEKIYSDNPFINLGAKDIVRKYLKGLRKVNPGLVKPEPHSEYGFK 179
Query: 461 SIEKDFKKMIRYCSV-----VRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWARE 625
+E ++K+ + +RVIA T L +KK I+EI++ GGT+ +++ +A +
Sbjct: 180 FLENNWKEKLERLKAAELADIRVIASTIPVLSGIGKKKPEIIEIKIGGGTLSERIDYAEK 239
Query: 626 HL 631
L
Sbjct: 240 LL 241
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 69.7 bits (163), Expect = 8e-11
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Frame = +2
Query: 53 PXHGSMGFYPKKRSRRHRGKVKAFPK--DDPSKPVHLTAFIGYKAGMTHVVREPDRPGSK 226
P GS+G+ P+ R+R + K++ + + D P + F+G+KAGM+H+V DRP S
Sbjct: 7 PRRGSLGYSPRVRARSQKPKMRNWAELGDQPK----IQGFVGFKAGMSHIVMVDDRPHSA 62
Query: 227 INKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVW 346
EI VTI+E P M G+ Y ++P+G + + W
Sbjct: 63 TEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAW 102
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 67.7 bits (158), Expect = 3e-10
Identities = 60/271 (22%), Positives = 117/271 (43%)
Frame = +2
Query: 29 VAQKNFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
+ + F P GS+ + P+ R+R +++ +P+ +P L A G+KAG +V
Sbjct: 1 MGHRKFSQPRRGSLAYSPRGRARSMEARIRGWPERQ-GEP-RLLAHAGFKAGCIQIVSID 58
Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 388
DR + K++V T++ TPP+ +G+ GY + +G V+AE + + +
Sbjct: 59 DREHTPNAGKQLVSLGTVLVTPPLHVLGMRGYSKGHYGRHVKFDVFAEDLPREVAK---- 114
Query: 389 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 568
Y GR + E+ + M+ + + I + QK+ +I
Sbjct: 115 --YIVLRN-------------GRLNAER-AETMLGGTAEIYGILGVSPRSAGLEQKRPYI 158
Query: 569 MEIQLNGGTIEDKVKWAREHLEKPIPGRFCVCPR*NG*LHWCHQGQRIQRCHFSLAHKEA 748
E + GG+++++ + ++ L K + + P + +G+ Q + K
Sbjct: 159 FEAPVRGGSMKERFAYLKDLLGKTVKASDVLEPGAGVDVAAITKGKGWQGVIQRMGAKRK 218
Query: 749 TRKTHKGLXKVACIGAWHPSRVSXTVXRAGQ 841
K+ K + ++ +G P V TV RAGQ
Sbjct: 219 QHKSRKTVRELGSLGPISPQNVMYTVPRAGQ 249
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 67.7 bits (158), Expect = 3e-10
Identities = 63/263 (23%), Positives = 112/263 (42%)
Frame = +2
Query: 53 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 232
P GSMGF+P+KR+ R ++K +PK + KP+ AF YK GMTH + IN
Sbjct: 9 PRRGSMGFWPRKRASRIYPRIKTWPKIEEIKPL---AFAAYKVGMTHTI-------LNIN 58
Query: 233 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 412
+ + VT++E P ++ +G Y + L+ + +++ + + R+ K
Sbjct: 59 GERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPK-------- 110
Query: 413 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 592
++++ ++ F V++I TQ +K + K I +I + G
Sbjct: 111 ---LKNYNFEEK------KEQFLSKADNADEVKIIVSTQPWKIKLK-KTPEIFDIPIGGS 160
Query: 593 TIEDKVKWAREHLEKPIPGRFCVCPR*NG*LHWCHQGQRIQRCHFSLAHKEATRKTHKGL 772
+ K+++A L K + + +G+ Q K+ KG+
Sbjct: 161 DVNKKLEYALSLLGKELSINDVFKEGQYVDVIAVTKGKGFQGVIKRFHVHRRQHKSEKGV 220
Query: 773 XKVACIGAWHPSRVSXTVXRAGQ 841
KV IG+ P R+ TV GQ
Sbjct: 221 RKVGAIGSRGPGRIFPTVPMPGQ 243
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 62.9 bits (146), Expect = 1e-08
Identities = 50/168 (29%), Positives = 66/168 (39%)
Frame = -1
Query: 841 LTSTXYSXRHPRRMPSSNAGNFXKTLVCLTGSFFVCQREXXXXXXXXXXXPMQSTISSWA 662
LTS+ + MPS+N N +T V L+ F
Sbjct: 6 LTSSGNGPVNVSWMPSTNTSNLSQTSVGLSWQFLGTPSVGDTLETVTFGDSNDINHFILF 65
Query: 661 NTESTRDRFLQMFSGPFHFVLDGTTVKLDFHNVXXXXXXXXXXXXSVGNDSYNTTVADHL 482
R+ F ++F GP +FV DGTTV LDF V V DS N +V
Sbjct: 66 ENRVNRNFFFKVFFGPVNFVGDGTTVDLDFSQVSFLLRQWSLLDLGVSQDSDNRSVLLDS 125
Query: 481 LEIFFY*FASKLILPFLTGFSESLLLAFVPVFVEATSTVFRHMLRPDS 338
+ F F + F F E LL F+PV VE++S F + PDS
Sbjct: 126 GQFSFNLFGVSGV--FTRVFGEGFLLGFIPVLVESSSDFFTQVFSPDS 171
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 61.7 bits (143), Expect = 2e-08
Identities = 34/105 (32%), Positives = 55/105 (52%)
Frame = +2
Query: 29 VAQKNFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
++ + F+HP GS+GF PKKRS R K + + +++ F K THV+R
Sbjct: 1 MSHRKFEHPRIGSLGFLPKKRSNRIFPSSKTYKEIIHIYYPYISQFASLKVASTHVLRIC 60
Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTV 343
+ SK + I++ VT++E PP+ VG+ Y + L L T+
Sbjct: 61 NIVSSKSYQNPIIDEVTLMECPPIEVVGLCAYALSSGHLVKLKTI 105
Score = 52.8 bits (121), Expect = 1e-05
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +2
Query: 752 RKTHKGLXKVACIGAWHPSRVSXTVXRAGQ 841
RKTH+GL KVACIG W PSRV+ T+ RAGQ
Sbjct: 224 RKTHRGLRKVACIGPWTPSRVAWTISRAGQ 253
>UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3; n=1;
Mus musculus|Rep: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3 - Mus
musculus (Mouse)
Length = 109
Score = 39.9 bits (89), Expect = 0.078
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2
Query: 101 HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKK 238
HR + K FPK+D K HL F+ +A MT+ V E +R G K +K
Sbjct: 8 HRIQAKDFPKEDLPKSAHLIVFLVSRAVMTYFVWEINRSGPKWTRK 53
>UniRef50_Q69NC6 Cluster: Putative uncharacterized protein
OJ1742_G01.32; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1742_G01.32 - Oryza sativa subsp. japonica (Rice)
Length = 100
Score = 35.1 bits (77), Expect = 2.2
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 235 ERDRGGCHHHRDSSDGLCRCCWIH*DPSWT 324
E DRG CHH+ S GLCR C + P+ T
Sbjct: 36 EGDRGCCHHYLTGSPGLCRRCPLRAHPAAT 65
>UniRef50_Q1EYM9 Cluster: Purine catabolism PurC-like; n=2;
Clostridiaceae|Rep: Purine catabolism PurC-like -
Clostridium oremlandii OhILAs
Length = 551
Score = 34.7 bits (76), Expect = 2.9
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +2
Query: 500 SVVRVIAHTQMKLLKQRQKKAH--IMEIQLNGGTIEDKVKWAREHLEKPI 643
SV + I + Q LL QR +K H +M + L GG+IED + RE+L P+
Sbjct: 126 SVFKEIFNKQTSLL-QRLEKVHEQLMNVVLEGGSIEDIGRVTRENLRNPL 174
>UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1205
Score = 34.3 bits (75), Expect = 3.9
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 86 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH--VVREPDRPGSKINKKEIVEAVT 259
K +++ K+K +++ K + AFI A ++ +R DR ++N I + T
Sbjct: 19 KANKKKAAKLKKLEQNEALKGRNPKAFISQAAYASNRLTIRNLDREAKRVNLPVIDRSGT 78
Query: 260 IIETPPMVCVGVVG 301
+ETPP V + VVG
Sbjct: 79 AVETPPYV-IAVVG 91
>UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1;
Sulfurovum sp. NBC37-1|Rep: Putative uncharacterized
protein - Sulfurovum sp. (strain NBC37-1)
Length = 135
Score = 33.9 bits (74), Expect = 5.1
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 437 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 592
WQD K I+KD+ + YC +R+ H +L ++ K HI+ + G
Sbjct: 29 WQDNSDAKYIQKDWNGAMLYCRQLRLAGHNDWRLPSIKELK-HILSTEPRDG 79
>UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to
ENSANGP00000006197; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000006197 - Nasonia
vitripennis
Length = 1307
Score = 33.5 bits (73), Expect = 6.8
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = -3
Query: 413 PSSCICTSFCRSDVDSLQTYAPPRQSKERVVHEGSQCIQQHRHKPSEESR 264
PS+ I T SD++ L P QS V+ +GS+ HR K SEE R
Sbjct: 840 PSASINTKKYESDIEILSN---PSQSSIEVLDDGSKSTTPHRKKSSEERR 886
>UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsis
invicta virus 1|Rep: Structural polyprotein - Solenopsis
invicta virus 1
Length = 1137
Score = 33.1 bits (72), Expect = 8.9
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 280 HRRSLDDGDSLHDLFLVDF*TGTVRFSNHVGHTGLITDKSSQMNRFARVV 131
HRR + ++ D+ LVD T++ VG GLITD +S ++ A V
Sbjct: 475 HRRDVTAARAIADMILVDERDATMQVQAEVGGQGLITDIASTVSAVAGAV 524
>UniRef50_A7TI46 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 253
Score = 33.1 bits (72), Expect = 8.9
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +2
Query: 449 LGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREH 628
L RKSIE + + IR+ +V I +K++++++ + E +L GT + + A
Sbjct: 135 LARKSIEYNTYQSIRFKTVFPDIVEENIKVIEEKKNNQNEKEDELLAGTKKQEDAIANAA 194
Query: 629 LEKPI 643
EKPI
Sbjct: 195 KEKPI 199
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 867,652,306
Number of Sequences: 1657284
Number of extensions: 18123744
Number of successful extensions: 42767
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 41052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42728
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 73373641369
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -