Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_B19
(871 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 134 3e-30
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 129 8e-29
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 116 8e-25
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 114 2e-24
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 97 4e-19
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 92 1e-17
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 59 1e-07
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 59 2e-07
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 57 5e-07
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 55 3e-06
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 54 5e-06
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 54 6e-06
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 52 1e-05
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 50 6e-05
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 50 1e-04
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 48 3e-04
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 47 7e-04
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 45 0.003
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 42 0.020
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 40 0.082
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 38 0.25
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 37 0.77
UniRef50_Q69NC6 Cluster: Putative uncharacterized protein OJ1742... 36 1.8
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 35 2.3
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 134 bits (324), Expect = 3e-30
Identities = 62/121 (51%), Positives = 79/121 (65%)
Frame = +3
Query: 36 VAQKIFSTPXMGLWDSIPKRGPXXXXXXXXXXXKTTXXXXXXXXXXXXYKAGMTHVVREP 215
++ + FS P G +P++ K YKAGMTH+VRE
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 216 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 395
DRPGSK+NKKE+VEAVTI+ETPPMV VG+VGY+ETP GLR TV+AEH+S++C+RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 396 N 398
N
Sbjct: 121 N 121
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 129 bits (312), Expect = 8e-29
Identities = 60/121 (49%), Positives = 75/121 (61%)
Frame = +3
Query: 36 VAQKIFSTPXMGLWDSIPKRGPXXXXXXXXXXXKTTXXXXXXXXXXXXYKAGMTHVVREP 215
++ + FS P G PK+ K YKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 216 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 395
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 396 N 398
N
Sbjct: 121 N 121
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 116 bits (279), Expect = 8e-25
Identities = 50/73 (68%), Positives = 63/73 (86%)
Frame = +3
Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 359
YKAGMTH +RE RPG KI+K+E VEAVTI+ETPP+V VGVVGY+ TP GLR+ T++AE
Sbjct: 49 YKAGMTHTLREVHRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAE 108
Query: 360 HMSEDCRRRFYKN 398
H+S++CRRRFYK+
Sbjct: 109 HLSDECRRRFYKD 121
Score = 71.7 bits (168), Expect = 2e-11
Identities = 29/42 (69%), Positives = 34/42 (80%)
Frame = +2
Query: 50 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 175
F P HG +GF P KRS RHRGKVK +P+DDPS+PVHLTAF+
Sbjct: 6 FSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFL 47
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 114 bits (275), Expect = 2e-24
Identities = 50/73 (68%), Positives = 60/73 (82%)
Frame = +3
Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 359
YKAGMTH+VR+ DRPGSK+NKKE+VE VTI+E PPMV VG+VGY +TP G + + TVWA
Sbjct: 100 YKAGMTHIVRDVDRPGSKVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAH 159
Query: 360 HMSEDCRRRFYKN 398
H S + RRRFYKN
Sbjct: 160 HTSVEFRRRFYKN 172
Score = 66.1 bits (154), Expect = 1e-09
Identities = 25/42 (59%), Positives = 35/42 (83%)
Frame = +2
Query: 50 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 175
F+HP HG +GF P+KRSR+ RG+ ++FPKDDPS+ HLT+F+
Sbjct: 57 FEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFM 98
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 97.5 bits (232), Expect = 4e-19
Identities = 42/73 (57%), Positives = 56/73 (76%)
Frame = +3
Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 359
+KA MTH++++ DRP SK+NKKE+VE V I+ETPPMV +G+VGYIE P GL V+AE
Sbjct: 49 HKANMTHIIQKVDRPESKMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAE 108
Query: 360 HMSEDCRRRFYKN 398
H+S ++ FYKN
Sbjct: 109 HISGKSKKCFYKN 121
Score = 66.9 bits (156), Expect = 6e-10
Identities = 29/43 (67%), Positives = 32/43 (74%)
Frame = +2
Query: 47 NFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 175
NF P HGS+GF P+K S H GKVK FPKDD SKPVHLT F+
Sbjct: 5 NFSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFL 47
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 92.3 bits (219), Expect = 1e-17
Identities = 43/79 (54%), Positives = 59/79 (74%), Gaps = 3/79 (3%)
Frame = +3
Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 359
Y+AGMTHVVR+ DRPGSK++KKE+VE VTI+ET P + VG VG ET GL+ +V+A+
Sbjct: 30 YQAGMTHVVRKVDRPGSKVHKKEVVEVVTIVETMPFMTVGTVGCTETIWGLQTFKSVFAK 89
Query: 360 HMSEDCRR---RFYKNCSP 407
H+S +C+R ++ N SP
Sbjct: 90 HISNECKRTGIKYKTNTSP 108
Score = 40.3 bits (90), Expect = 0.062
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +2
Query: 92 KRSRRHRGKVKAFPKDDPSKPVHLTAFI 175
K S +H+GKV FPKD SKPV+L+AF+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFL 28
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 59.3 bits (137), Expect = 1e-07
Identities = 29/68 (42%), Positives = 37/68 (54%)
Frame = +3
Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 359
YKAGMTHVV D+ + E VT++ETPPM V Y +TP+G + L VWA+
Sbjct: 45 YKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWAD 104
Query: 360 HMSEDCRR 383
E R
Sbjct: 105 DTHESLDR 112
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 58.8 bits (136), Expect = 2e-07
Identities = 27/63 (42%), Positives = 39/63 (61%)
Frame = +3
Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 359
+KAGMTHV+ P S +EI +AVT++E PPM + V GY TP+G++ +WA+
Sbjct: 46 WKAGMTHVLMRDTNPHSTSAGQEIRKAVTVVEVPPMKVLAVRGYHMTPYGMQTAGEIWAD 105
Query: 360 HMS 368
S
Sbjct: 106 SSS 108
Score = 33.5 bits (73), Expect = 7.1
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSK 151
P GSMGF P+KR+ R G++ ++P+ + S+
Sbjct: 7 PKRGSMGFSPRKRAIRPFGRITSWPETESSE 37
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 57.2 bits (132), Expect = 5e-07
Identities = 26/60 (43%), Positives = 32/60 (53%)
Frame = +3
Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 359
YKAGMTH + D P S +EI VTI++ PPM + Y TP G R + WAE
Sbjct: 49 YKAGMTHAIMIDDWPNSPTEGEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAE 108
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 54.8 bits (126), Expect = 3e-06
Identities = 26/59 (44%), Positives = 35/59 (59%)
Frame = +3
Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWA 356
+KAGMTHV+ PGS E+ +AVT++E PPM + V GY TP+G + WA
Sbjct: 46 WKAGMTHVMMRDLNPGSPSAGAEVRKAVTVVEVPPMRVLAVRGYKMTPYGKQTAGEAWA 104
Score = 37.5 bits (83), Expect = 0.44
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAF 172
P GSMGF P+KR+ R G+VK++P+ D S V + F
Sbjct: 7 PKKGSMGFGPRKRANRPYGRVKSWPETD-SDEVRVQGF 43
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 54.0 bits (124), Expect = 5e-06
Identities = 27/70 (38%), Positives = 37/70 (52%)
Frame = +3
Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 359
YK GM HV+ S +E A T+IE PP+ V V Y +TP+G + L VWA+
Sbjct: 43 YKVGMLHVIGVEMNKNSPFYGQERFYAATVIEVPPLKVVAVRVYEKTPYGKKTLCEVWAK 102
Query: 360 HMSEDCRRRF 389
+ +D R F
Sbjct: 103 DLPKDLERVF 112
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 53.6 bits (123), Expect = 6e-06
Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Frame = +3
Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPH-GLRALLTVWA 356
Y+AGMTHV DRPG + KEI VTI+ETPPM V Y P+ G +L WA
Sbjct: 48 YRAGMTHVFMVDDRPGRPTSGKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWA 107
Query: 357 EHMSE-DCRRR 386
+ E + +RR
Sbjct: 108 QPPPELELQRR 118
Score = 37.1 bits (82), Expect = 0.58
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 175
P GS+GF P+KR+ R +VK +P+ D KPV L AF+
Sbjct: 9 PRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFL 46
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 52.4 bits (120), Expect = 1e-05
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = +3
Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGY-IETPHGLRALLTVW 353
YKAGM+H + DRP + + KEI VT+++ PP++ +G+ GY I HGL + VW
Sbjct: 66 YKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLSFGEVW 124
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 50.4 bits (115), Expect = 6e-05
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = +3
Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVW 353
+KAGM+H+V DRP S EI VTI+E P M G+ Y ++P+G + + W
Sbjct: 45 FKAGMSHIVMVDDRPHSATEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAW 102
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 49.6 bits (113), Expect = 1e-04
Identities = 29/60 (48%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +3
Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVG--VVGYIETPHGLRALLTVW 353
YK GMTHV+ DR +EI VT+IETPPMV +G V GY + G AL VW
Sbjct: 46 YKVGMTHVIMIDDREHVDTAGQEIFVPVTVIETPPMVVLGARVYGY-DPNRGRYALTEVW 104
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 48.0 bits (109), Expect = 3e-04
Identities = 24/44 (54%), Positives = 28/44 (63%)
Frame = +3
Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGY 311
YKAGMTH++ D PG N KEI VTIIETPP+ G+ Y
Sbjct: 44 YKAGMTHILMIDDEPGLT-NGKEIFMPVTIIETPPLRVFGIRAY 86
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 46.8 bits (106), Expect = 7e-04
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Frame = +3
Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPM-VC-VGVVGYIETPHGLRALLTVW 353
YKAGM+H + D P S +E+ +TI+E PP+ VC + V G E + L L VW
Sbjct: 45 YKAGMSHAFIKEDNPKSPNAGQEVFTPITILEAPPINVCAIRVYGRNERNY-LTTLTEVW 103
Query: 354 AEHMSEDCRRR 386
A+++ ++ R+
Sbjct: 104 ADNLDKELERK 114
Score = 33.9 bits (74), Expect = 5.4
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +2
Query: 47 NFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAF 172
N P GS+ F P+KR++R +++++P++D V L AF
Sbjct: 4 NINRPRRGSLAFSPRKRAKRPVPRIRSWPEED---TVRLQAF 42
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 44.8 bits (101), Expect = 0.003
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Frame = +3
Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLT-VWA 356
YK GMTHV D P S N KEI VT++E PP++ + + Y G ++T W+
Sbjct: 48 YKVGMTHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAIDGKGEPNVITEYWS 107
Query: 357 EHMSE--DCRRRFYKNCSPLE 413
+ D RR + S L+
Sbjct: 108 SSSLQFLDITRRIHSISSFLK 128
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 41.9 bits (94), Expect = 0.020
Identities = 21/60 (35%), Positives = 33/60 (55%)
Frame = +3
Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 359
+KAG +V DR K++V T++ TPP++ +G+ GY + GL A V+AE
Sbjct: 48 FKAGCVQIVSIDDREKVPNAGKQLVSLGTVLVTPPVLILGIRGYSKDHDGLHAEFDVYAE 107
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 39.9 bits (89), Expect = 0.082
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAF 172
P GSMGF+P+KR+ R ++K +PK + KP+ A+
Sbjct: 9 PRRGSMGFWPRKRASRIYPRIKTWPKIEEIKPLAFAAY 46
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 38.3 bits (85), Expect = 0.25
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = +3
Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 359
+KAG +V DR + K++V T++ TPP+ +G+ GY + +G V+AE
Sbjct: 47 FKAGCIQIVSIDDREHTPNAGKQLVSLGTVLVTPPLHVLGMRGYSKGHYGRHVKFDVFAE 106
Query: 360 HMSED 374
+ +
Sbjct: 107 DLPRE 111
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 36.7 bits (81), Expect = 0.77
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +3
Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHG-LRALLTVWA 356
+K GMTHV R S + I VT+IE PP+ +G+ Y E G + + W
Sbjct: 45 FKVGMTHVEMVDYRKTSVTAGQPIFVPVTVIEVPPLDVIGIRLYDEDEEGNMVVVYEKWT 104
Query: 357 EHMSED 374
+++ ++
Sbjct: 105 QNLDKE 110
>UniRef50_Q69NC6 Cluster: Putative uncharacterized protein
OJ1742_G01.32; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1742_G01.32 - Oryza sativa subsp. japonica (Rice)
Length = 100
Score = 35.5 bits (78), Expect = 1.8
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +2
Query: 242 ERDRGGCHHHRDSSDGLCRCCWIH*DPSWTTRSVD 346
E DRG CHH+ S GLCR C + P+ T V+
Sbjct: 36 EGDRGCCHHYLTGSPGLCRRCPLRAHPAATGFEVE 70
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 35.1 bits (77), Expect = 2.3
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +3
Query: 183 KAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTV 350
K THV+R + SK + I++ VT++E PP+ VG+ Y + L L T+
Sbjct: 50 KVASTHVLRICNIVSSKSYQNPIIDEVTLMECPPIEVVGLCAYALSSGHLVKLKTI 105
Score = 33.5 bits (73), Expect = 7.1
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 50 FQHPXHGSMGFYPKKRSRR 106
F+HP GS+GF PKKRS R
Sbjct: 6 FEHPRIGSLGFLPKKRSNR 24
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 724,194,255
Number of Sequences: 1657284
Number of extensions: 13378843
Number of successful extensions: 27260
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 26474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27252
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77472727479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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