Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_B10
(850 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 405 e-112
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 372 e-102
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 294 2e-78
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 246 5e-64
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 227 2e-58
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 163 4e-39
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 125 1e-27
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 119 1e-25
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 114 2e-24
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 111 3e-23
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 110 5e-23
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 105 1e-21
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 103 7e-21
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 101 3e-20
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 100 4e-20
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 97 4e-19
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 95 3e-18
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 93 6e-18
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 92 1e-17
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 91 4e-17
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 90 6e-17
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 88 3e-16
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 85 2e-15
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 72 2e-11
UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN full-le... 40 0.079
UniRef50_A7TI46 Cluster: Putative uncharacterized protein; n=1; ... 37 0.74
UniRef50_Q69NC6 Cluster: Putative uncharacterized protein OJ1742... 35 2.2
UniRef50_Q1EYM9 Cluster: Purine catabolism PurC-like; n=2; Clost... 35 3.0
UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1; ... 34 3.9
UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1; ... 34 5.2
UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to ENSANGP000... 33 6.9
UniRef50_A2YFM3 Cluster: Putative uncharacterized protein; n=3; ... 33 6.9
UniRef50_Q9MAP1 Cluster: Putative F-box protein At1g33020; n=4; ... 33 6.9
UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsi... 33 9.1
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 405 bits (997), Expect = e-112
Identities = 179/267 (67%), Positives = 211/267 (79%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F P HGS+GF P+KRS RHRGKVK+FPKDDPSKPVHLTAF+GYKAGMTH+VRE DRPGS
Sbjct: 6 FSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGS 65
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 408
K+NKKE+VEAVTI+ETPPMV VG+VGY+ETP GLR TV+AEH+S++C+RRFYKNW+
Sbjct: 66 KVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKS 125
Query: 409 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 588
WQDE G+K +EKDF M +YC V+RVIAHTQM+LL RQKKAH+MEIQ+
Sbjct: 126 KKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQV 185
Query: 589 NGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPRKTH 768
NGGT+ +K+ WARE LE+ +PV+ VF QDEMID I SRWHTK LPRKTH
Sbjct: 186 NGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTH 245
Query: 769 KGLRKVACIGTWHPSRVSSXVXRAGQK 849
+GLRKVACIG WHP+RV+ V RAGQK
Sbjct: 246 RGLRKVACIGAWHPARVAFSVARAGQK 272
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 372 bits (916), Expect = e-102
Identities = 167/267 (62%), Positives = 200/267 (74%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F P HG +GF P KRS RHRGKVK +P+DDPS+PVHLTAF+GYKAGMTH +RE RPG
Sbjct: 6 FSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGL 65
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 408
KI+K+E VEAVTI+ETPP+V VGVVGY+ TP GLR+ T++AEH+S++CRRRFYK+W+
Sbjct: 66 KISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKS 125
Query: 409 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 588
W+D G+K ++KDF M +YC V+RVI HTQMKLL RQKKAHIMEIQL
Sbjct: 126 KKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIMEIQL 185
Query: 589 NGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPRKTH 768
NGGT+ +KV WA+ LEK +PV SVF+Q E+ID I SRWHTK LPRKTH
Sbjct: 186 NGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTH 245
Query: 769 KGLRKVACIGTWHPSRVSSXVXRAGQK 849
KGLRKVACIG WHP+RV + RAGQK
Sbjct: 246 KGLRKVACIGAWHPARVGCSIARAGQK 272
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 294 bits (722), Expect = 2e-78
Identities = 138/269 (51%), Positives = 177/269 (65%), Gaps = 3/269 (1%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F+HP HG +GF P+KRSR+ RG+ ++FPKDDPS+ HLT+F+ YKAGMTH+VR+ DRPGS
Sbjct: 57 FEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVRDVDRPGS 116
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 408
K+NKKE+VE VTI+E PPMV VG+VGY +TP G + + TVWA H S + RRRFYKNW
Sbjct: 117 KVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRFYKNWKQS 176
Query: 409 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQ---KKAHIME 579
+ GR + + K + ++RV+AHTQ++ L+ + KKAH+ E
Sbjct: 177 AQLAFTKRKQFARTTEGRLAEARTLKAFEKKADIIRVVAHTQLRKLRNNRVGVKKAHVSE 236
Query: 580 IQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPR 759
IQ+NGGTI K++ A+ LEK + +DSVF Q E D RW LPR
Sbjct: 237 IQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRWGVACLPR 296
Query: 760 KTHKGLRKVACIGTWHPSRVSSXVXRAGQ 846
KTH+GLRKVACIG WHPSRV V RAGQ
Sbjct: 297 KTHRGLRKVACIGAWHPSRVMYTVARAGQ 325
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 246 bits (602), Expect = 5e-64
Identities = 107/163 (65%), Positives = 127/163 (77%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 408
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125
Query: 409 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 537
WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 126 KKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
Score = 85.8 bits (203), Expect = 1e-15
Identities = 40/63 (63%), Positives = 42/63 (66%)
Frame = +1
Query: 661 VFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPRKTHKGLRKVACIGTWHPSRVSSXVXRA 840
V A +MID I SRWHTK LPRKTHKGLRKVACIG WHPSRV+ V RA
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARA 221
Query: 841 GQK 849
GQK
Sbjct: 222 GQK 224
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 227 bits (556), Expect = 2e-58
Identities = 120/268 (44%), Positives = 161/268 (60%)
Frame = +1
Query: 46 NFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 225
NF P HGS+GF P+K S H GKVK FPKDD SKPVHLT F+ +KA MTH++++ DRP
Sbjct: 5 NFSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKVDRPE 64
Query: 226 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYX 405
SK+NKKE+VE V I+ETPPMV +G+VGYIE P GL V+AEH+S ++ FYKNW+
Sbjct: 65 SKMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAEHISGKSKKCFYKNWHS 124
Query: 406 XXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQ 585
++G++ +E +FK M +YC V+ ++AHTQM LL QKKAH+MEIQ
Sbjct: 125 EKKASTKYF------DMGKRQLEMEFKSMKKYCQVICIVAHTQMCLLSLHQKKAHLMEIQ 178
Query: 586 LNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPRKT 765
+ G + W RE + QDE+ID I + P +
Sbjct: 179 VMG---HCGLSW-REAVN----------QDEIIDVIKETKGNGYKGVTRVDIQRNCPERP 224
Query: 766 HKGLRKVACIGTWHPSRVSSXVXRAGQK 849
+G K+ C+G WHP+RV+ V + GQK
Sbjct: 225 IEGCPKL-CVGAWHPARVTFSVAQVGQK 251
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 163 bits (397), Expect = 4e-39
Identities = 96/235 (40%), Positives = 132/235 (56%)
Frame = +1
Query: 91 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTII 270
K S +H+GKV FPKD SKPV+L+AF+GY+AGMTHVVR+ DRPGSK++KKE+VE VTI+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFLGYQAGMTHVVRKVDRPGSKVHKKEVVEVVTIV 60
Query: 271 ETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQD 450
ET P + VG VG ET GL+ +V+A+H+S +C+R K Y W+
Sbjct: 61 ETMPFMTVGTVGCTETIWGLQTFKSVFAKHISNECKRTGIK--YKTNTSPNTKARSSWR- 117
Query: 451 ELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWARE 630
G ++ TQM LL QKKAH+ E Q+N G + K+ WA +
Sbjct: 118 --GTSAL-------------------TQMCLLPLCQKKAHLTESQVNRGPVA-KLDWAHK 155
Query: 631 HLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPRKTHKGLRKVACI 795
LE+ +PV+ +F + I S W+TK +P KTH+ + ACI
Sbjct: 156 KLEQQVPVNHIFRVRRLF-VIGTTKGKHYKGISSHWYTKKVPWKTHQEFHEAACI 209
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 125 bits (302), Expect = 1e-27
Identities = 88/273 (32%), Positives = 128/273 (46%), Gaps = 10/273 (3%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GS+GF P+KR++ +++++PK+ V + F GYKAGMTH++ D PG N
Sbjct: 7 PRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPGLT-N 62
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSED---CRRRFYK----- 393
KEI VTIIETPP+ G+ Y GL V D + R K
Sbjct: 63 GKEIFMPVTIIETPPLRVFGIRAYRMGYLGLETATEVIVPDFPLDNYPAKERKGKPKPKM 122
Query: 394 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVV--RVIAHTQMKLLKQRQKKA 567
+Y + E+ + + + + MI+ +V R I TQ ++K + KK
Sbjct: 123 TFYKLLERRIATLPKNYTQEMFEQKLGQ-LEDMIKEGEIVDVRAIVATQPWVIKLK-KKP 180
Query: 568 HIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTK 747
+ME + G ++E+K + +E L K + V V + E++D I RW K
Sbjct: 181 EVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIK 240
Query: 748 XLPRKTHKGLRKVACIGTWHPSRVSSXVXRAGQ 846
K KG RKV IG WHP+RV V AGQ
Sbjct: 241 LRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQ 273
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 119 bits (286), Expect = 1e-25
Identities = 84/271 (30%), Positives = 132/271 (48%), Gaps = 4/271 (1%)
Frame = +1
Query: 46 NFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 225
N P GS+ F P+KR++R +++++P++D V L AF YKAGM+H + D P
Sbjct: 4 NINRPRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPK 60
Query: 226 SKINKKEIVEAVTIIETPPM-VC-VGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 399
S +E+ +TI+E PP+ VC + V G E + L L VWA+++ ++ R+
Sbjct: 61 SPNAGQEVFTPITILEAPPINVCAIRVYGRNERNY-LTTLTEVWADNLDKELERKI---- 115
Query: 400 YXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIME 579
+ RK++E D + + VRV+ HT KL +KK I+E
Sbjct: 116 -------------KLPKKEDRKTVE-DLEALKDKIEDVRVLVHTNPKLTCLPKKKPEILE 161
Query: 580 IQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTK-XLP 756
I++ G IE+++ +A+E L K + + VF + E++D I RW K
Sbjct: 162 IRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRWGVKIQFG 221
Query: 757 RKTHKGL-RKVACIGTWHPSRVSSXVXRAGQ 846
+ KG+ R V IG W P V V GQ
Sbjct: 222 KHARKGVGRHVGSIGPWQPKMVMWSVPMPGQ 252
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 114 bits (275), Expect = 2e-24
Identities = 79/270 (29%), Positives = 126/270 (46%), Gaps = 7/270 (2%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GSMGF P+KR+ R G++ ++P+ + S+ + + F G+KAGMTHV+ P S
Sbjct: 7 PKRGSMGFSPRKRAIRPFGRITSWPETESSE-IRVQGFAGWKAGMTHVLMRDTNPHSTSA 65
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMS--EDCRRRFYKNWYXXX 411
+EI +AVT++E PPM + V GY TP+G++ +WA+ S + RF
Sbjct: 66 GQEIRKAVTVVEVPPMKVLAVRGYHMTPYGMQTAGEIWADSSSGPDGLMPRFANQTRGDR 125
Query: 412 XXXXXXXXXXWQDELGRK--SIEKDFKKMIRYCSV--VRVIAHTQMKLLKQRQKKAH-IM 576
+ + + D + ++ VR+I TQ L+K K IM
Sbjct: 126 DIEEGRKPAKRAGRIPVREGGMNGDALAALTDSNLCEVRLIVATQPALVKSVPSKTPVIM 185
Query: 577 EIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLP 756
E+ L GG K++WA E L I +D V+ + +D + R+ K L
Sbjct: 186 EVGLVGGDTGAKLEWAHERLGGEIGIDDVYEAGKELDVVGITKGKGWQGVIKRFGVKLLS 245
Query: 757 RKTHKGLRKVACIGTWHPSRVSSXVXRAGQ 846
K K R++ +G + V + +AGQ
Sbjct: 246 HKNSKRRRQIGNMGDFGTGYVRKTIRQAGQ 275
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 111 bits (266), Expect = 3e-23
Identities = 81/264 (30%), Positives = 119/264 (45%), Gaps = 1/264 (0%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GSMGF P+KR+ R G+VK++P+ D S V + F G+KAGMTHV+ PGS
Sbjct: 7 PKKGSMGFGPRKRANRPYGRVKSWPETD-SDEVRVQGFAGWKAGMTHVMMRDLNPGSPSA 65
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 417
E+ +AVT++E PPM + V GY TP+G + WA S D +
Sbjct: 66 GAEVRKAVTVVEVPPMRVLAVRGYKMTPYGKQTAGEAWA---SADKLSDVIPSLPRRIPE 122
Query: 418 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM-KLLKQRQKKAHIMEIQLNG 594
D+L + + VR+I +Q K+ K IME+ L G
Sbjct: 123 RKEHDANAHLDKLRESDLAE-----------VRLIVSSQPDKVSAVGSKSPEIMEMGLTG 171
Query: 595 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPRKTHKG 774
G + ++ WA E L + + ++ VF ID I R+ K L K K
Sbjct: 172 GDLGAQLDWAAEKLGEELGIEDVFESGSDIDVIGVTKGYGNQGVVRRFGVKLLSHKNSKR 231
Query: 775 LRKVACIGTWHPSRVSSXVXRAGQ 846
R++ +G + V + +AGQ
Sbjct: 232 RRQIGNMGDFGTGYVRKTIRQAGQ 255
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 110 bits (264), Expect = 5e-23
Identities = 87/249 (34%), Positives = 125/249 (50%), Gaps = 6/249 (2%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GS+GF P+KR+ R +VK +P+ D KPV L AF+GY+AGMTHV DRPG +
Sbjct: 9 PRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRPGRPTS 67
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPH-GLRALLTVWAEHMSE-DCRRRFYKNWYXXX 411
KEI VTI+ETPPM V Y P+ G +L WA+ E + +RR
Sbjct: 68 GKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRRI-------- 119
Query: 412 XXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLL-KQRQKKAHIMEIQL 588
+ + KS+E+ K VR+IA +Q KL +KK ++EI++
Sbjct: 120 -----STLGSFDTDKMLKSLEERLDK----AEDVRLIAASQPKLAGGLSKKKPDLLEIKV 170
Query: 589 NGGTIEDKV-KWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPR-- 759
G + K+ +A++ L I V+ VF + +++D I RW K LPR
Sbjct: 171 GGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIKRWGVKELPRWH 230
Query: 760 KTHKGLRKV 786
K KG R++
Sbjct: 231 KHRKGSRRI 239
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 105 bits (252), Expect = 1e-21
Identities = 80/266 (30%), Positives = 117/266 (43%), Gaps = 3/266 (1%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GS+ F P+KR+ R +++++P ++ V + F GYKAGMTH + D P S
Sbjct: 12 PRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTE 68
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 417
+EI VTI++ PPM + Y TP G R + WAE E R +
Sbjct: 69 GEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAEIPEELEMDRVF-----TVPK 123
Query: 418 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 597
+EL + I ++ +RVI TQ K +KK +ME ++ G
Sbjct: 124 DGEAGDLDKIEELVDEGIVEE----------IRVIVATQPKKAGVPKKKPDVMEYRIGGK 173
Query: 598 TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPRKT---H 768
+ ++ ++A E L + I VF + E++D RW RKT
Sbjct: 174 DVRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQRKQ 233
Query: 769 KGLRKVACIGTWHPSRVSSXVXRAGQ 846
KG R + IG PSRV V AGQ
Sbjct: 234 KG-RHIGSIGPITPSRVRWTVPMAGQ 258
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 103 bits (246), Expect = 7e-21
Identities = 84/268 (31%), Positives = 118/268 (44%), Gaps = 5/268 (1%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GSMGF P+KR+ + ++P DD V L F GYKAGMTHVV D+ +
Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTE 64
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 417
E VT++ETPPM V Y +TP+G + L VWA+ E R
Sbjct: 65 GMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL---------- 114
Query: 418 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHT-QMKLLKQRQKKAHIMEIQLNG 594
DEL IE + I + +RVI HT +K +ME ++ G
Sbjct: 115 -SVPDEGGDTDEL----IEALDTEEI---ADIRVITHTVPGDTAGVPKKNPDVMETRVGG 166
Query: 595 GTIEDKVKWAREHLEK--PIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHT-KXLPRKT 765
GT+ D++++A + +E VF E D RW K +
Sbjct: 167 GTLADRLEFAADLIEDGGVHAFGDVFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHA 226
Query: 766 HKG-LRKVACIGTWHPSRVSSXVXRAGQ 846
+G R++ +G W+PSRV S V + GQ
Sbjct: 227 RQGWRRRIGNLGPWNPSRVRSTVPQQGQ 254
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 101 bits (241), Expect = 3e-20
Identities = 59/155 (38%), Positives = 81/155 (52%)
Frame = -2
Query: 807 MPSSNAGNFPKTLVCLTG*XLCVPTRSDTFVSFALGDTNAVNHFILGKHRIDRDRFLQMF 628
MPS+N N +T V L+ L P+ DT + GD+N +NHFIL ++R++R+ F ++F
Sbjct: 19 MPSTNTSNLSQTSVGLSWQFLGTPSVGDTLETVTFGDSNDINHFILFENRVNRNFFFKVF 78
Query: 627 SGPFHFVLDGTTVKLDFHNVXXXXXXXXXXXXSVGNDSYNTTVADHLLEIFFY*FASKLI 448
GP +FV DGTTV LDF V V DS N +V + F F +
Sbjct: 79 FGPVNFVGDGTTVDLDFSQVSFLLRQWSLLDLGVSQDSDNRSVLLDSGQFSFNLFGVSGV 138
Query: 447 LPFLTGFSESLLLAFVPVFVEATSTVFRHMLRPDS 343
F F E LL F+PV VE++S F + PDS
Sbjct: 139 --FTRVFGEGFLLGFIPVLVESSSDFFTQVFSPDS 171
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 100 bits (240), Expect = 4e-20
Identities = 73/264 (27%), Positives = 119/264 (45%), Gaps = 1/264 (0%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GS+ + P+ R++ +++A+PK D +P + A G+KAG +V DR
Sbjct: 9 PRRGSLAYSPRVRAKSMEARIRAWPKLDSEEP-KILAHCGFKAGCVQIVSIDDREKVPNA 67
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF-YKNWYXXXX 414
K++V T++ TPP++ +G+ GY + GL A V+AE + + + KN
Sbjct: 68 GKQLVSLGTVLVTPPVLILGIRGYSKDHDGLHAEFDVYAEDIPKSIAKEISLKN------ 121
Query: 415 XXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNG 594
+ E + EK KK+ ++V I+ + L QKK +I E ++G
Sbjct: 122 ----------KQENALDNAEKSLKKIKEIFAIV-AISPSAAGL---EQKKPYIFEASVSG 167
Query: 595 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPRKTHKG 774
G I + +E L K I +D +F +D RW+ K K+ K
Sbjct: 168 GDIPKQFAHVKELLGKEIKIDQIFETGASVDVAAITKGKGWQGVLKRWNVKKKQHKSRKT 227
Query: 775 LRKVACIGTWHPSRVSSXVXRAGQ 846
+R+V +G P V V RAGQ
Sbjct: 228 VREVGSLGPISPQSVMYTVPRAGQ 251
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 97.5 bits (232), Expect = 4e-19
Identities = 73/254 (28%), Positives = 115/254 (45%), Gaps = 2/254 (0%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GS +YP+KR+R +V+ +P++ F GYK GM HV+ S
Sbjct: 7 PRRGSRAYYPRKRARSIVARVRRWPQNREG----FLGFAGYKVGMLHVIGVEMNKNSPFY 62
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 417
+E A T+IE PP+ V V Y +TP+G + L VWA+ + +D R F
Sbjct: 63 GQERFYAATVIEVPPLKVVAVRVYEKTPYGKKTLCEVWAKDLPKDLERVF---------- 112
Query: 418 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 597
+D+ + K +++ S VRV+A TQ +L +KK ++EI + GG
Sbjct: 113 ------PLPKDQSYHEEQLKKLEEVKSRVSEVRVLAATQPRLSGLGKKKPELIEIAV-GG 165
Query: 598 TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPR--KTHK 771
E + A E L K + + VF + + ID I R+ + +PR K K
Sbjct: 166 PPEKALSLALEKLGKDLTISDVFKEGDYIDVIAVTKGKGFQGSVKRFGVEEMPRWHKHRK 225
Query: 772 GLRKVACIGTWHPS 813
G ++ +G P+
Sbjct: 226 GHSRIGSVGPQKPA 239
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 94.7 bits (225), Expect = 3e-18
Identities = 67/263 (25%), Positives = 119/263 (45%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GSMGF+P+KR+ R ++K +PK + KP+ AF YK GMTH + IN
Sbjct: 9 PRRGSMGFWPRKRASRIYPRIKTWPKIEEIKPL---AFAAYKVGMTHTI-------LNIN 58
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 417
+ + VT++E P ++ +G Y + L+ + +++ + + R+ K
Sbjct: 59 GERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPK-------- 110
Query: 418 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 597
++++ ++ F V++I TQ +K + K I +I + G
Sbjct: 111 ---LKNYNFEEK------KEQFLSKADNADEVKIIVSTQPWKIKLK-KTPEIFDIPIGGS 160
Query: 598 TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPRKTHKGL 777
+ K+++A L K + ++ VF + + +D I R+H K+ KG+
Sbjct: 161 DVNKKLEYALSLLGKELSINDVFKEGQYVDVIAVTKGKGFQGVIKRFHVHRRQHKSEKGV 220
Query: 778 RKVACIGTWHPSRVSSXVXRAGQ 846
RKV IG+ P R+ V GQ
Sbjct: 221 RKVGAIGSRGPGRIFPTVPMPGQ 243
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 93.5 bits (222), Expect = 6e-18
Identities = 69/265 (26%), Positives = 117/265 (44%), Gaps = 1/265 (0%)
Frame = +1
Query: 55 HPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKI 234
H GSM +YP+ R++ +++++P + S PV + F G+K GMTHV R S
Sbjct: 6 HSRRGSMAYYPRVRAKSIEPRIRSWP--EISGPVKVQGFAGFKVGMTHVEMVDYRKTSVT 63
Query: 235 NKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXX 414
+ I VT+IE PP+ +G+ Y E G + V E +++ + +K
Sbjct: 64 AGQPIFVPVTVIEVPPLDVIGIRLYDEDEEG---NMVVVYEKWTQNLDKELFKK------ 114
Query: 415 XXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNG 594
E+ K + + Y V ++A + KK I E+++ G
Sbjct: 115 -------ITTFKEVKEKPVPE------TYADVRLIVATRNKDVPGIPSKKPEIFELRIGG 161
Query: 595 G-TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPRKTHK 771
G +++++ ++A HL K I + + +D + R+ K LPRK K
Sbjct: 162 GNSVKERFEYATAHLGKTIRFEDFSKPGKFVDVLSVTKGKGFTGHVQRFGVKLLPRKNRK 221
Query: 772 GLRKVACIGTWHPSRVSSXVXRAGQ 846
R + +G WHP V + V +AGQ
Sbjct: 222 HRRMIGTLGPWHPDWVRNTVPQAGQ 246
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 92.3 bits (219), Expect = 1e-17
Identities = 80/289 (27%), Positives = 129/289 (44%), Gaps = 43/289 (14%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFP------------------KDDPSKPVHLTAFI 174
+ P HGS+G P+KR+ + +++++P K KPV L ++
Sbjct: 6 YSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV-LLGYV 64
Query: 175 GYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGY-IETPHGLRALLTVW 351
YKAGM+H + DRP + + KEI VT+++ PP++ +G+ GY I HGL + VW
Sbjct: 65 AYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLSFGEVW 124
Query: 352 ---AEHMSEDCRRRFYKNWYXXXXXXXXXXXXXW--------------QDELGRKSIEKD 480
E + E + + N + E G K +E +
Sbjct: 125 RSPVEALKELYEKIYSDNPFINLGAKDIVRKYLKGLRKVNPGLVKPEPHSEYGFKFLENN 184
Query: 481 FKKMIRYCSV-----VRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKP 645
+K+ + +RVIA T L +KK I+EI++ GGT+ +++ +A + L
Sbjct: 185 WKEKLERLKAAELADIRVIASTIPVLSGIGKKKPEIIEIKIGGGTLSERIDYAEKLLGNY 244
Query: 646 IPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPR--KTHKGLRKV 786
+ VD VF + + ID I R+ K LPR K KG RK+
Sbjct: 245 VTVDQVFREGQFIDIIGVTKGKGFQGVIKRFGVKELPRWHKHRKGSRKI 293
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 90.6 bits (215), Expect = 4e-17
Identities = 74/259 (28%), Positives = 118/259 (45%), Gaps = 7/259 (2%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GS G P+KRS + +P+ + P L F+GYK GMTHV D P S N
Sbjct: 9 PRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMIDDWPNSPTN 67
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLT-VWAEHMSE--DCRRRFYK-NWYX 405
KEI VT++E PP++ + + Y G ++T W+ + D RR + + +
Sbjct: 68 GKEIYMPVTVLEVPPIIPLALRAYAIDGKGEPNVITEYWSSSSLQFLDITRRIHSISSFL 127
Query: 406 XXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKA-HIMEI 582
+ +L I+ + +++ + R++ TQ + + KKA ++EI
Sbjct: 128 KDDESKKKFDERFNTKL--DLIKSNLDRIVYF----RLLVSTQPRKIPSLGKKAPDLVEI 181
Query: 583 QLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPR- 759
Q+ GG + ++ +A L K I + VF + ++ID + R+ LPR
Sbjct: 182 QIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRW 241
Query: 760 -KTHKGLRKVACIGTWHPS 813
K KG RK IGT PS
Sbjct: 242 HKHRKGSRK---IGTRGPS 257
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 90.2 bits (214), Expect = 6e-17
Identities = 70/268 (26%), Positives = 120/268 (44%), Gaps = 5/268 (1%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPK--DDPSKPVHLTAFIGYKAGMTHVVREPDRPGSK 231
P GS+G+ P+ R+R + K++ + + D P + F+G+KAGM+H+V DRP S
Sbjct: 7 PRRGSLGYSPRVRARSQKPKMRNWAELGDQPK----IQGFVGFKAGMSHIVMVDDRPHSA 62
Query: 232 INKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSE-DCRRRFYKNWYXX 408
EI VTI+E P M G+ Y ++P+G + + W + + KN Y
Sbjct: 63 TEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAWISDLKMLESLTHLPKNGYK- 121
Query: 409 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 588
DE K E K ++ V+ V +++ + +K +ME ++
Sbjct: 122 ------------TDEQLAKIAELVKKGVVADLRVMTVTLTSEVSGIP--KKVPELMENRI 167
Query: 589 NGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPRKTH 768
GG + + ++A+ + K + + VFA E++D RW RK
Sbjct: 168 AGGDMAKRFEFAKSLMGKAVGIKDVFAPGELVDVSAITKGYGTQGPVVRWGIATQKRKHA 227
Query: 769 KGLRK--VACIGTWHPSRVSSXVXRAGQ 846
+ +K V +G W+P R+ V + GQ
Sbjct: 228 RTGKKRHVGNLGPWNPHRIRWQVPQLGQ 255
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 87.8 bits (208), Expect = 3e-16
Identities = 78/276 (28%), Positives = 127/276 (46%), Gaps = 13/276 (4%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GS G P+KR+ +V+++P D KP+ AF+GYK GMTHV+ DR
Sbjct: 9 PRRGSAGLRPRKRAASIVPRVRSWPSIDEVKPL---AFLGYKVGMTHVIMIDDREHVDTA 65
Query: 238 KKEIVEAVTIIETPPMVCVG--VVGYIETPHGLRALLTVW-------AEHMSEDCRRRFY 390
+EI VT+IETPPMV +G V GY + G AL VW E + E+ R++
Sbjct: 66 GQEIFVPVTVIETPPMVVLGARVYGY-DPNRGRYALTEVWRNPSDTIKEKLGEEVLRKYL 124
Query: 391 --KNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKK 564
+ ++ ++ K ++ D +K++ ++ I + K K
Sbjct: 125 LGMSKRLPHMVEELGPGKGFEFKVPEKELDVDPEKVVGVGLIMSSIPFLAGGVSK---KA 181
Query: 565 AHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHT 744
I+E+++ G +E +++A+ L + + V+ V + +D I R+
Sbjct: 182 PDILEVKVGGSPVE-ALEYAKGKLGQLVDVEEVIEAGKFVDVIGVTKGKGFQGVIKRFGV 240
Query: 745 KXLPR--KTHKGLRKVACIGTWHPSRVSSXVXRAGQ 846
K LP+ K KG R+V +W SS V + GQ
Sbjct: 241 KELPKWHKHRKGSRRVGA-RSWGKG-TSSYVPQPGQ 274
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 85.0 bits (201), Expect = 2e-15
Identities = 45/120 (37%), Positives = 70/120 (58%)
Frame = +1
Query: 490 MIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFA 669
+I++ + R + T +K +KK + E + GG+ + K+++ + K I ++S+F
Sbjct: 136 IIKHSVIFRFLCCTFIKTNSMIKKK-YFFETDIIGGSPKMKLEFWLKLNNKKIYINSIFH 194
Query: 670 QDEMIDCIXXXXXXXXXXXXSRWHTKXLPRKTHKGLRKVACIGTWHPSRVSSXVXRAGQK 849
++++ID I SRW LPRKTH+GLRKVACIG W PSRV+ + RAGQK
Sbjct: 195 ENDIIDAIGITKGHGTKGVVSRWGITRLPRKTHRGLRKVACIGPWTPSRVAWTISRAGQK 254
Score = 60.1 bits (139), Expect = 7e-08
Identities = 34/100 (34%), Positives = 52/100 (52%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F+HP GS+GF PKKRS R K + + +++ F K THV+R + S
Sbjct: 6 FEHPRIGSLGFLPKKRSNRIFPSSKTYKEIIHIYYPYISQFASLKVASTHVLRICNIVSS 65
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTV 348
K + I++ VT++E PP+ VG+ Y + L L T+
Sbjct: 66 KSYQNPIIDEVTLMECPPIEVVGLCAYALSSGHLVKLKTI 105
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 72.1 bits (169), Expect = 2e-11
Identities = 60/266 (22%), Positives = 111/266 (41%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F P GS+ + P+ R+R +++ +P+ +P L A G+KAG +V DR +
Sbjct: 6 FSQPRRGSLAYSPRGRARSMEARIRGWPERQ-GEP-RLLAHAGFKAGCIQIVSIDDREHT 63
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 408
K++V T++ TPP+ +G+ GY + +G V+AE + + + Y
Sbjct: 64 PNAGKQLVSLGTVLVTPPLHVLGMRGYSKGHYGRHVKFDVFAEDLPREVAK------YIV 117
Query: 409 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 588
GR + E+ + M+ + + I + QK+ +I E +
Sbjct: 118 LRN-------------GRLNAER-AETMLGGTAEIYGILGVSPRSAGLEQKRPYIFEAPV 163
Query: 589 NGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPRKTH 768
GG+++++ + ++ L K + V +D R K K+
Sbjct: 164 RGGSMKERFAYLKDLLGKTVKASDVLEPGAGVDVAAITKGKGWQGVIQRMGAKRKQHKSR 223
Query: 769 KGLRKVACIGTWHPSRVSSXVXRAGQ 846
K +R++ +G P V V RAGQ
Sbjct: 224 KTVRELGSLGPISPQNVMYTVPRAGQ 249
>UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3; n=1;
Mus musculus|Rep: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3 - Mus
musculus (Mouse)
Length = 109
Score = 39.9 bits (89), Expect = 0.079
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +1
Query: 106 HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKK 243
HR + K FPK+D K HL F+ +A MT+ V E +R G K +K
Sbjct: 8 HRIQAKDFPKEDLPKSAHLIVFLVSRAVMTYFVWEINRSGPKWTRK 53
>UniRef50_A7TI46 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 253
Score = 36.7 bits (81), Expect = 0.74
Identities = 21/77 (27%), Positives = 41/77 (53%)
Frame = +1
Query: 454 LGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREH 633
L RKSIE + + IR+ +V I +K++++++ + E +L GT + + A
Sbjct: 135 LARKSIEYNTYQSIRFKTVFPDIVEENIKVIEEKKNNQNEKEDELLAGTKKQEDAIANAA 194
Query: 634 LEKPIPVDSVFAQDEMI 684
EKPI ++ + ++ I
Sbjct: 195 KEKPISLEEILDPEDRI 211
>UniRef50_Q69NC6 Cluster: Putative uncharacterized protein
OJ1742_G01.32; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1742_G01.32 - Oryza sativa subsp. japonica (Rice)
Length = 100
Score = 35.1 bits (77), Expect = 2.2
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 240 ERDRGGCHHHRDSSDGLCRCCWIH*DPSWT 329
E DRG CHH+ S GLCR C + P+ T
Sbjct: 36 EGDRGCCHHYLTGSPGLCRRCPLRAHPAAT 65
>UniRef50_Q1EYM9 Cluster: Purine catabolism PurC-like; n=2;
Clostridiaceae|Rep: Purine catabolism PurC-like -
Clostridium oremlandii OhILAs
Length = 551
Score = 34.7 bits (76), Expect = 3.0
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +1
Query: 505 SVVRVIAHTQMKLLKQRQKKAH--IMEIQLNGGTIEDKVKWAREHLEKPI 648
SV + I + Q LL QR +K H +M + L GG+IED + RE+L P+
Sbjct: 126 SVFKEIFNKQTSLL-QRLEKVHEQLMNVVLEGGSIEDIGRVTRENLRNPL 174
>UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1205
Score = 34.3 bits (75), Expect = 3.9
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +1
Query: 91 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH--VVREPDRPGSKINKKEIVEAVT 264
K +++ K+K +++ K + AFI A ++ +R DR ++N I + T
Sbjct: 19 KANKKKAAKLKKLEQNEALKGRNPKAFISQAAYASNRLTIRNLDREAKRVNLPVIDRSGT 78
Query: 265 IIETPPMVCVGVVG 306
+ETPP V + VVG
Sbjct: 79 AVETPPYV-IAVVG 91
>UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1;
Sulfurovum sp. NBC37-1|Rep: Putative uncharacterized
protein - Sulfurovum sp. (strain NBC37-1)
Length = 135
Score = 33.9 bits (74), Expect = 5.2
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 442 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 597
WQD K I+KD+ + YC +R+ H +L ++ K HI+ + G
Sbjct: 29 WQDNSDAKYIQKDWNGAMLYCRQLRLAGHNDWRLPSIKELK-HILSTEPRDG 79
>UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to
ENSANGP00000006197; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000006197 - Nasonia
vitripennis
Length = 1307
Score = 33.5 bits (73), Expect = 6.9
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = -1
Query: 418 PSSCICTSFCRSDVDSLQTYAPPRQSKERVVHEGSQCIQQHRHKPSEESR 269
PS+ I T SD++ L P QS V+ +GS+ HR K SEE R
Sbjct: 840 PSASINTKKYESDIEILSN---PSQSSIEVLDDGSKSTTPHRKKSSEERR 886
>UniRef50_A2YFM3 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 310
Score = 33.5 bits (73), Expect = 6.9
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +3
Query: 9 FSLRLSSSMSHRKFSAPRSWVYGILSQKE 95
FSL L+ S S+R+F P+SWV+G+ + ++
Sbjct: 165 FSLGLNLSTSNRQFVPPKSWVFGMAAMRK 193
>UniRef50_Q9MAP1 Cluster: Putative F-box protein At1g33020; n=4;
Arabidopsis thaliana|Rep: Putative F-box protein
At1g33020 - Arabidopsis thaliana (Mouse-ear cress)
Length = 518
Score = 33.5 bits (73), Expect = 6.9
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -3
Query: 659 ESTGIGFSRCSLAHFTLSSMVPPLSWISIM*AFFCRCFNSFI 534
E TG+ S+C +H +S + PL W+SI+ F + SF+
Sbjct: 474 EFTGVKTSKCDTSHLQVSCELSPLCWLSIL-LFLVMVYMSFM 514
>UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsis
invicta virus 1|Rep: Structural polyprotein - Solenopsis
invicta virus 1
Length = 1137
Score = 33.1 bits (72), Expect = 9.1
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -2
Query: 285 HRRSLDDGDSLHDLFLVDF*TGTVRFSNHVGHTGLITDKSSQMNRFARVV 136
HRR + ++ D+ LVD T++ VG GLITD +S ++ A V
Sbjct: 475 HRRDVTAARAIADMILVDERDATMQVQAEVGGQGLITDIASTVSAVAGAV 524
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 873,170,524
Number of Sequences: 1657284
Number of extensions: 18056078
Number of successful extensions: 42706
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 40997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42669
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 74603367202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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