Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40047
         (876 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    26   0.34 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   3.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   4.2  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   4.2  
AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase l...    23   4.2  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 362 STWMISSVSTPTKTKLNLFLTSGRSLTPRTIPFGM 466
           S W I    +P   +   FL +GRS T + +PFG+
Sbjct: 399 SYWQIPL--SPESRQYTAFLYNGRSYTYQVLPFGL 431


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 507 HEHLSEFLRVF--VFGIPNGIVLGVKLLPEVRNRFSFVFV 394
           H HLS+ +R+F  +FG    ++ G+  L   +  F+   V
Sbjct: 858 HHHLSKLIRLFNEIFGHGLLLMFGISFLLVTQTIFALCVV 897


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 189 FLGSYVGGAAQSVSEPTTADTCGWWATV 106
           F+ S  GG   S+ +  T   CG W  +
Sbjct: 208 FVLSRAGGLVNSLYQNATRKVCGVWKRI 235


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 662 IRRQREHEFFSAPHPH 615
           I R  +  FF +PHPH
Sbjct: 338 IHRTVDDYFFCSPHPH 353


>AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase like
           protein E1 protein.
          Length = 139

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 635 FSAPHPHSGDGGIVVFTKQADGC 567
           F AP P     G++  TK+ D C
Sbjct: 16  FKAPQPPENWTGVLDATKEGDPC 38


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,655
Number of Sequences: 336
Number of extensions: 4708
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)