Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40011
         (360 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    21   5.1  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    21   5.1  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    20   6.7  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    20   6.7  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    20   8.8  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           20   8.8  

>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 352 EGRFEVSAEHLLVGSGSDGFDHSLVD 275
           EG FEV A       G + FD+ LV+
Sbjct: 42  EGIFEVKATAGDTHLGGEDFDNRLVE 67


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 352 EGRFEVSAEHLLVGSGSDGFDHSLVD 275
           EG FEV A       G + FD+ LV+
Sbjct: 42  EGIFEVKATAGDTHLGGEDFDNRLVE 67


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 257 KTDQKTVDEAVIKAIGARPDKK 322
           K D+K  D   ++A+  RP  K
Sbjct: 115 KLDKKNDDSPALRALLTRPQAK 136


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 257 KTDQKTVDEAVIKAIGARPDKK 322
           K D+K  D   ++A+  RP  K
Sbjct: 115 KLDKKNDDSPALRALLTRPQAK 136


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 257 CLLRWNVFLFFCGKDVIT 204
           CL   NV    CG D+ T
Sbjct: 503 CLFCINVLAEACGSDITT 520


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 257 KTDQKTVDEAVIKAIGARPDKK 322
           K D+K  D   ++A+  RP  K
Sbjct: 115 KLDKKDDDSPALRALLTRPQAK 136


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,445
Number of Sequences: 336
Number of extensions: 1678
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7299165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)