Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20187
         (790 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       25   0.91 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   4.9  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   8.5  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 262 YNTKFLSSTTWDGSLRSASVTSGVSCKQSSRNKP 161
           + T+F+S+T W  SLR+A +   +S  +   + P
Sbjct: 264 HGTQFISNT-WQNSLRAADIQPTLSSIRHPESNP 296


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 447  NIAVNCLYYFTC 482
            N+ +NC+Y F C
Sbjct: 1126 NVLLNCVYLFLC 1137


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 429 YYLIKINIAVNCLYYFTC 482
           YY +     + C+YYF C
Sbjct: 134 YYFVVPLFFLLCIYYFYC 151



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 462 CLYYFTCVVHIDKC 503
           C+YYF C + I  C
Sbjct: 284 CIYYFYCALIILLC 297


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,732
Number of Sequences: 336
Number of extensions: 4062
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)