Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20166
         (604 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   0.86 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    24   0.86 
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   6.1  
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    21   8.0  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    21   8.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 276  FLCSVITSPACEKSLSEGTDVPTIVKYL 359
            +L S   SP+  + +  G DVPT+ KYL
Sbjct: 1981 WLLSAAVSPS-RRVVDAGYDVPTLSKYL 2007


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 300 PACEKSLSEGTDVPTIVKYLKAI 368
           PA  ++++ G DVP I KYL  I
Sbjct: 681 PASFEAIAAGYDVPEISKYLDFI 703


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -1

Query: 439 VGRLKENPLEIWRDYKIQFPKLYKIAFKYLTIVGTSVPS 323
           V R  + P+ +W  +  Q   + K   K   ++ T VP+
Sbjct: 426 VARNSDTPIILWTSHLTQADVIEKYLSKARYVIQTWVPA 464


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 182 SPRQHIFFTYSNIFCQCYVKTKV 250
           S +Q  FF   ++  QCY+   +
Sbjct: 34  SNKQLQFFAVEHLLIQCYIAVSI 56


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 118 G*ALIKTKICINQEIYVLKLKITETTHFFYIFQYFLSM 231
           G  L KT IC++     +       T  FY+  +F S+
Sbjct: 93  GLMLDKTGICVSNVFDFVHFYYPVATMSFYVLNFFGSI 130


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,856
Number of Sequences: 336
Number of extensions: 3334
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)