Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20138
         (682 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   7.1  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   9.3  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   9.3  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   9.3  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   9.3  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 163 N*SLLNTISRHVLPHAPSPTIT 98
           N S  ++ SRH + H P P +T
Sbjct: 149 NYSAYSSASRHHVDHQPVPYLT 170


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 202 LPTSKWMENKWN 237
           LPT KWM+ K N
Sbjct: 194 LPTYKWMQVKRN 205


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 368 TSLGCSRANPASPPRS 321
           T +  S+A+PA+ PRS
Sbjct: 202 TKVKASKASPAAAPRS 217


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 202 LPTSKWMENKWN 237
           LPT KWM+ K N
Sbjct: 194 LPTYKWMQVKRN 205


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 202 LPTSKWMENKWN 237
           LPT KWM+ K N
Sbjct: 194 LPTYKWMQVKRN 205


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,947
Number of Sequences: 336
Number of extensions: 3739
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)