Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20132
         (695 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    22   4.2  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   4.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.3  
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    21   7.3  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    21   7.3  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    21   9.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.6  

>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 531 TG*RTYRCQYC 563
           TG R YRC++C
Sbjct: 33  TGERPYRCEHC 43


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 531 TG*RTYRCQYC 563
           TG R YRC++C
Sbjct: 186 TGERPYRCEHC 196


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 43  ATSFPLPNLTWPRA 2
           A  FP P +TW RA
Sbjct: 722 ADGFPRPVVTWKRA 735


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 123 LKHALRYYRHLFASLL 76
           L+  LRY+  +F+SLL
Sbjct: 84  LQQKLRYFEEVFSSLL 99


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 123 LKHALRYYRHLFASLL 76
           L+  LRY+  +F+SLL
Sbjct: 84  LQQKLRYFEEVFSSLL 99


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 328 RISYQTSES*RNSRTGSRRELRCA 399
           RIS +  ES  N R    R+L+CA
Sbjct: 29  RISDEAIESTLNDRRYLLRQLKCA 52


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 526  AEQAKELIDANTVIVFGFF 582
            A  AKELI+     VF FF
Sbjct: 1255 ARIAKELIELRNKSVFAFF 1273


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 526  AEQAKELIDANTVIVFGFF 582
            A  AKELI+     VF FF
Sbjct: 1255 ARIAKELIELRNKSVFAFF 1273


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,306
Number of Sequences: 336
Number of extensions: 2780
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)