Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20079
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    25   0.59 
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   1.8  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   3.2  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   7.3  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   9.7  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 413 LANILSLVALKLQHLAVLRVLHDRTLHANSFL 318
           L +I   VAL ++HLA  RV+H R L A + L
Sbjct: 594 LLSIARQVALGMEHLAKTRVVH-RDLAARNVL 624


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 457 CTVSKPPC*NITCPHSTCIMRDC 525
           CTV   P   + C  + C++ DC
Sbjct: 143 CTVETDPNRALDCDPTQCVLPDC 165


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 525 RVVIINPIKNMYLESTDVYR 584
           R ++  PI N Y E+  VYR
Sbjct: 767 RGILFVPIPNKYYEAKQVYR 786


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 457 CTVSKPPC*NITCPHSTCIMRDC 525
           CTV   P     C  + C++ DC
Sbjct: 150 CTVETDPNRAPDCDPTQCVLPDC 172


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 559 YIFLIGFIITTRNLS*YMLSVDMLC 485
           Y F   FII T +L  Y + + +LC
Sbjct: 213 YYFYSAFIIFTIHLLFYCVLIILLC 237


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,740
Number of Sequences: 336
Number of extensions: 3377
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)