SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20075
         (715 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    25   0.61 
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    23   2.5  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    23   2.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.5  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = -3

Query: 125 VIRNND---CTVIVLQVSVHHAPAFPH 54
           V  NND   C V+  + S+  AP FPH
Sbjct: 191 VYPNNDGTKCLVVTDEASISDAPFFPH 217


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 266 IFCPAVWNSNSPVNVTLMLY 325
           I CP VW  +  V + L++Y
Sbjct: 289 IVCPIVWLMDEVVEIYLLVY 308


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 266 IFCPAVWNSNSPVNVTLMLY 325
           I CP VW  +  V + L++Y
Sbjct: 289 IVCPIVWLMDEVVEIYLLVY 308


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 74  GAQKLGGQLRCSRY 115
           GA+K+GGQL    Y
Sbjct: 301 GAEKMGGQLSDKEY 314


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,118
Number of Sequences: 336
Number of extensions: 3678
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2022 -