Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20058
         (614 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   1.5  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   6.2  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    21   6.2  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 156 YNQTRIFVVCQLF 118
           Y +T+IF+ C+LF
Sbjct: 127 YKRTQIFITCELF 139


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 392 CTYVWLKYEVIRLNLEMY 339
           C  VWL  EV+ + L +Y
Sbjct: 291 CPIVWLMDEVVEIYLLVY 308


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 392 CTYVWLKYEVIRLNLEMY 339
           C  VWL  EV+ + L +Y
Sbjct: 291 CPIVWLMDEVVEIYLLVY 308


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,397
Number of Sequences: 336
Number of extensions: 2930
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)