SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20053
         (739 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   5.9  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    22   5.9  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    22   5.9  

>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 611 FGSHNEPKIHSKAAIRVKSTALLIIQNN 528
           FG   +PKI  K  +      +  IQNN
Sbjct: 37  FGLKEQPKIEGKVQVPEALKKIYNIQNN 64


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 113 NILVSIEDVSFPSKILKKTSFSHSV 187
           N +  I+DV+F  + L  TS  HS+
Sbjct: 453 NQISDIDDVNFQEENLALTSTEHSL 477


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 113 NILVSIEDVSFPSKILKKTSFSHSV 187
           N +  I+DV+F  + L  TS  HS+
Sbjct: 278 NQISDIDDVNFQEENLALTSTEHSL 302


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,733
Number of Sequences: 336
Number of extensions: 3292
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2022 -