Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00083
         (753 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.0  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   3.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   6.0  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    22   6.0  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   8.0  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   8.0  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 58  QAKWVRFEKLRLVKSKTLWLAKRAMKKSNFQMIAKR 165
           Q KW  +E  R    +T W AKR  +   FQ+   R
Sbjct: 200 QKKWRGYEDFRRDFLRTYWSAKR-QRDIRFQIATGR 234


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 64  KWVRFEKLRLVKSKTLWL 117
           +WV F+  R +K+K  WL
Sbjct: 829 QWVGFDDERSLKTKMAWL 846


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 92   SLSFSNLTHFACNLLINLFFNFYV 21
            +L   NL+H A NL  NL + F+V
Sbjct: 1259 NLRNQNLSHQAKNLDSNLKYEFWV 1282


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 392 CDSLMDQDIMTPLTCYFHEHA 454
           C     Q+I+T L+C FH+ A
Sbjct: 71  CLDFTVQNILTFLSCRFHQGA 91


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 260 ENIDEVINQGLVKVAAPLLLDPA 328
           +N  ++ N GL KVAA    +PA
Sbjct: 70  DNATDITNGGLQKVAALKKTNPA 92


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 735 VCSCF*QFDLIFFHCKWIVFNNNKQALQYCCYYVY 631
           +CS +    L+F+ C +I+F  +     Y  YY +
Sbjct: 74  LCSGYFTVHLLFY-CPFIIFTVHFLLCTYYFYYAF 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,157
Number of Sequences: 336
Number of extensions: 3575
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)