Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00061
         (367 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    27   0.045
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   1.3  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    20   6.9  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    20   9.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    20   9.1  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 0.045
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 260 PYVCYVTLPGGACFGSFQNCPTKA 331
           PY  Y  +P   C G+ Q+CPT++
Sbjct: 338 PYTMYFRMPH-RCHGNLQSCPTRS 360


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 135 WSPLDCERMEALQEFW 182
           W+P DC+ +  L E W
Sbjct: 489 WNPKDCDPLITLIETW 504


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 6.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 237 ESVPAAIRPTSATSRSPVERA 299
           E V   +  TSA S S VERA
Sbjct: 178 EIVAKLVAYTSAQSHSSVERA 198


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +2

Query: 236 RVCAGCHPPYVCY 274
           R C    PP +CY
Sbjct: 110 RACREGEPPRICY 122


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +2

Query: 236 RVCAGCHPPYVCY 274
           R C    PP +CY
Sbjct: 110 RACREGEPPRICY 122


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,952
Number of Sequences: 336
Number of extensions: 958
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7510735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)