Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00041
         (817 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    27   0.18 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   2.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   5.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   5.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   5.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   5.1  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 607 NFVKIPGR-YFPLEIDYGDNETKTLTVDPKCELAEPVQRLIVTIFDIHYMKQTCSNSS 777
           NFV + G  Y  L I   +N+ K  T      L   ++  ++ IF+++Y+   C N S
Sbjct: 224 NFVVLLGDLYVTLYIILTNNQAKYCTT-----LIGLIKNCVIVIFELYYLSHVCQNVS 276


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 36  DVDKMSPKMQSIQYLDIVVLDESFLNSIDPETGTVARSLELMKEYNIADW 185
           ++ K SP+MQS +    +    S  +S+       A  L    EYN  +W
Sbjct: 237 NIKKESPQMQSYRPTGNITPHGSNTSSLITTPSPSASPLAYQHEYNSFNW 286


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 497 CRSDPTNGTTSICSLYYVSRSAV 429
           CRS+        C+ YYV RS +
Sbjct: 560 CRSEGIFSDPKNCAAYYVCRSGL 582


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 603 PVFPTVLSFFFVQRLESVQSVIEIFHLL 520
           P F   L  FF + L +V   + IF++L
Sbjct: 162 PAFSHFLIVFFTETLHTVGIALLIFYIL 189


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 603 PVFPTVLSFFFVQRLESVQSVIEIFHLL 520
           P F   L  FF + L +V   + IF++L
Sbjct: 162 PAFSHFLIVFFTETLHTVGIALLIFYIL 189


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 603 PVFPTVLSFFFVQRLESVQSVIEIFHLL 520
           P F   L  FF + L +V   + IF++L
Sbjct: 162 PAFSHFLIVFFTETLHTVGIALLIFYIL 189


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 603 PVFPTVLSFFFVQRLESVQSVIEIFHLL 520
           P F   L  FF + L +V   + IF++L
Sbjct: 162 PAFSHFLIVFFTETLHTVGIALLIFYIL 189


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,752
Number of Sequences: 336
Number of extensions: 3617
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)