Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00040
         (729 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    25   0.83 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    25   0.83 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   3.3  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   3.3  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    22   4.4  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    22   4.4  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 184 PFSTIKLHNVHKKSNYNNNKTTI 116
           P STI L+N    SN+N + +++
Sbjct: 40  PSSTIDLYNTSSVSNFNESSSSV 62


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 184 PFSTIKLHNVHKKSNYNNNKTTI 116
           P STI L+N    SN+N + +++
Sbjct: 40  PSSTIDLYNTSSVSNFNESSSSV 62


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = +1

Query: 541 GVIGKLGRCLGVFENREHKHRTEVYVMTVTQ---ELPEWEDSRLMGRKRQWF 687
           G +G  G+    F+  + ++        ++Q   E+PEW  S+  G     F
Sbjct: 501 GRVGNKGKATSFFDEDQDRNLASDLAKILSQAKQEIPEWLGSKSYGGSADQF 552


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 326 KMVKEKPNSIRIYDDEGFRRRAACICVRSDA 418
           K  K  PN +  YD    R+    IC   DA
Sbjct: 205 KSAKTPPNKLNCYDLRRVRKNYNSICELVDA 235


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 589 LGSRILQDIVLVSRSLRLPQV 527
           +G   + +IVLV  S R+P+V
Sbjct: 154 IGKSAVHEIVLVGGSTRIPKV 174


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 589 LGSRILQDIVLVSRSLRLPQV 527
           +G   + +IVLV  S R+P+V
Sbjct: 154 IGKSAVHEIVLVGGSTRIPKV 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,895
Number of Sequences: 336
Number of extensions: 3310
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)