Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0254.Seq
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    25   0.59 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    25   0.59 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    25   0.59 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    25   0.59 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    25   0.59 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           25   0.59 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    25   0.59 
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   5.5  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   7.3  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   7.3  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   7.3  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.7  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.7  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.7  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.7  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.7  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   9.7  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.7  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 171 MDKSRLRQSTVHSNEIGERQRSQRTGYE 254
           M +  L QSTV++N   +RQR+  T Y+
Sbjct: 204 MKRVHLGQSTVNANGETKRQRTSYTRYQ 231


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 171 MDKSRLRQSTVHSNEIGERQRSQRTGYE 254
           M +  L QSTV++N   +RQR+  T Y+
Sbjct: 204 MKRVHLGQSTVNANGETKRQRTSYTRYQ 231


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 171 MDKSRLRQSTVHSNEIGERQRSQRTGYE 254
           M +  L QSTV++N   +RQR+  T Y+
Sbjct: 204 MKRVHLGQSTVNANGETKRQRTSYTRYQ 231


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 171 MDKSRLRQSTVHSNEIGERQRSQRTGYE 254
           M +  L QSTV++N   +RQR+  T Y+
Sbjct: 204 MKRVHLGQSTVNANGETKRQRTSYTRYQ 231


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 171 MDKSRLRQSTVHSNEIGERQRSQRTGYE 254
           M +  L QSTV++N   +RQR+  T Y+
Sbjct: 160 MKRVHLGQSTVNANGETKRQRTSYTRYQ 187


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 171 MDKSRLRQSTVHSNEIGERQRSQRTGYE 254
           M +  L QSTV++N   +RQR+  T Y+
Sbjct: 204 MKRVHLGQSTVNANGETKRQRTSYTRYQ 231


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 171 MDKSRLRQSTVHSNEIGERQRSQRTGYE 254
           M +  L QSTV++N   +RQR+  T Y+
Sbjct: 204 MKRVHLGQSTVNANGETKRQRTSYTRYQ 231


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 343 GPAGGATHRPAHSGGGT 293
           GPA    H PAH   GT
Sbjct: 333 GPARSRRHLPAHLVAGT 349


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 162 SDCMDKSRLRQSTVHSNEIGERQRSQ 239
           SDC       Q+  H+NE+  R + +
Sbjct: 27  SDCDKNQNTEQNYTHNNEMYHRVKEE 52


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 171 MDKSRLRQSTVHSNEIGERQRSQ 239
           M +  L QSTV++N   +RQR++
Sbjct: 204 MKRVHLGQSTVNANGETKRQRTR 226


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 162 SDCMDKSRLRQSTVHSNEIGERQRSQ 239
           SDC       Q+  H+NE+  R + +
Sbjct: 27  SDCDKNQNTEQNYTHNNEMYHRVKEE 52


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 516 YICKPI*YYDRSFTLXIGQR 575
           Y C P  Y D +FT+ I +R
Sbjct: 191 YACCPEPYVDVTFTIKIRRR 210


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 516 YICKPI*YYDRSFTLXIGQR 575
           Y C P  Y D +FT+ I +R
Sbjct: 191 YACCPEPYVDVTFTIKIRRR 210


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 516 YICKPI*YYDRSFTLXIGQR 575
           Y C P  Y D +FT+ I +R
Sbjct: 191 YACCPEPYVDVTFTIKIRRR 210


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 516 YICKPI*YYDRSFTLXIGQR 575
           Y C P  Y D +FT+ I +R
Sbjct: 191 YACCPEPYVDVTFTIKIRRR 210


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 516 YICKPI*YYDRSFTLXIGQR 575
           Y C P  Y D +FT+ I +R
Sbjct: 191 YACCPEPYVDVTFTIKIRRR 210


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 301 RRCVQGGAWPRRQDQYAPL 357
           R C    +WP R  + AP+
Sbjct: 29  RDCTTASSWPGRPPKRAPV 47


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 390 LCELEXVSCRESTYYAVTSL 449
           +C++E VSC+++    V  L
Sbjct: 133 VCDVEMVSCKDAALRKVVPL 152


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,212
Number of Sequences: 336
Number of extensions: 3289
Number of successful extensions: 19
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)