Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0226.Seq
         (568 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...   133   1e-33
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...   133   1e-33
AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin pr...   121   4e-30
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...   119   2e-29

>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
           protein.
          Length = 76

 Score =  133 bits (321), Expect = 1e-33
 Identities = 65/70 (92%), Positives = 66/70 (94%)
 Frame = +3

Query: 12  MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
           MQ  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 192 IQXESTLHLV 221
           IQ ESTLHLV
Sbjct: 61  IQKESTLHLV 70


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score =  133 bits (321), Expect = 1e-33
 Identities = 65/70 (92%), Positives = 66/70 (94%)
 Frame = +3

Query: 12  MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
           MQ  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 192 IQXESTLHLV 221
           IQ ESTLHLV
Sbjct: 61  IQKESTLHLV 70



 Score =  133 bits (321), Expect = 1e-33
 Identities = 65/70 (92%), Positives = 66/70 (94%)
 Frame = +3

Query: 12  MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
           MQ  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY 
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 192 IQXESTLHLV 221
           IQ ESTLHLV
Sbjct: 137 IQKESTLHLV 146



 Score =  133 bits (321), Expect = 1e-33
 Identities = 65/70 (92%), Positives = 66/70 (94%)
 Frame = +3

Query: 12  MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
           MQ  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY 
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 192 IQXESTLHLV 221
           IQ ESTLHLV
Sbjct: 213 IQKESTLHLV 222



 Score =  133 bits (321), Expect = 1e-33
 Identities = 65/70 (92%), Positives = 66/70 (94%)
 Frame = +3

Query: 12  MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
           MQ  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY 
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query: 192 IQXESTLHLV 221
           IQ ESTLHLV
Sbjct: 289 IQKESTLHLV 298



 Score =  133 bits (321), Expect = 1e-33
 Identities = 65/70 (92%), Positives = 66/70 (94%)
 Frame = +3

Query: 12  MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
           MQ  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY 
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364

Query: 192 IQXESTLHLV 221
           IQ ESTLHLV
Sbjct: 365 IQKESTLHLV 374



 Score =  133 bits (321), Expect = 1e-33
 Identities = 65/70 (92%), Positives = 66/70 (94%)
 Frame = +3

Query: 12  MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
           MQ  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY 
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516

Query: 192 IQXESTLHLV 221
           IQ ESTLHLV
Sbjct: 517 IQKESTLHLV 526



 Score =  133 bits (321), Expect = 1e-33
 Identities = 65/70 (92%), Positives = 66/70 (94%)
 Frame = +3

Query: 12  MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
           MQ  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY 
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592

Query: 192 IQXESTLHLV 221
           IQ ESTLHLV
Sbjct: 593 IQKESTLHLV 602



 Score =  133 bits (321), Expect = 1e-33
 Identities = 65/70 (92%), Positives = 66/70 (94%)
 Frame = +3

Query: 12  MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
           MQ  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY 
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668

Query: 192 IQXESTLHLV 221
           IQ ESTLHLV
Sbjct: 669 IQKESTLHLV 678



 Score =  130 bits (315), Expect = 6e-33
 Identities = 64/70 (91%), Positives = 65/70 (92%)
 Frame = +3

Query: 12  MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
           MQ  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQR IFAGKQLEDGRTLSDY 
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYN 440

Query: 192 IQXESTLHLV 221
           IQ ESTLHLV
Sbjct: 441 IQKESTLHLV 450


>AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin
           protein.
          Length = 64

 Score =  121 bits (292), Expect = 4e-30
 Identities = 59/64 (92%), Positives = 60/64 (93%)
 Frame = +3

Query: 12  MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
           MQ  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 192 IQXE 203
           IQ E
Sbjct: 61  IQKE 64


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score =  119 bits (286), Expect = 2e-29
 Identities = 58/64 (90%), Positives = 59/64 (92%)
 Frame = +3

Query: 12  MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
           MQ  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQR IFAGKQLEDGRTLSDY 
Sbjct: 49  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYN 108

Query: 192 IQXE 203
           IQ E
Sbjct: 109 IQKE 112



 Score = 83.4 bits (197), Expect = 1e-18
 Identities = 39/42 (92%), Positives = 40/42 (95%)
 Frame = +3

Query: 96  KIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYXIQXESTLHLV 221
           KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY IQ ESTLHLV
Sbjct: 1   KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 42


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,003
Number of Sequences: 336
Number of extensions: 1557
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)