Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0224.Seq
         (571 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    22   3.2  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    22   3.2  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   5.6  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   7.4  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   9.8  

>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 470 DNIIIKSVCFIMNLMFQLINKAFILH 547
           + +I  +VCF+M LM ++  +  IL+
Sbjct: 162 NTVISATVCFMMLLMLEIWRRFTILN 187


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 470 DNIIIKSVCFIMNLMFQLINKAFILH 547
           + +I  +VCF+M LM ++  +  IL+
Sbjct: 158 NTVISATVCFMMLLMLEIWRRFTILN 183


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 269 LLQYCQVTTYLYGFCNLV 216
           L   CQV   +YGF N +
Sbjct: 221 LCNLCQVANSIYGFQNFL 238


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = -3

Query: 290 CMQSCTILLQYCQVTTYLYGFCNLVNC 210
           C++S   L   C     ++GF  ++ C
Sbjct: 516 CIRSHDKLCDVCDSVNRIFGFIIIIGC 542



 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = -3

Query: 290 CMQSCTILLQYCQVTTYLYGFCNLVNC 210
           CM+    L   C     L+GF  ++ C
Sbjct: 235 CMRCHDQLCDMCGAINMLFGFPIIIGC 261


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 356 SFILPTDRA*AISSVIPITRRT 291
           + +LPT  A  +  ++PI +RT
Sbjct: 185 ALVLPTQGASPLPLLVPIPQRT 206


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,019
Number of Sequences: 336
Number of extensions: 2619
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)