Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30284.Seq
         (702 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    38   1e-04
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    33   0.002
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   9.7  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   9.7  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   9.7  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.7  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
 Frame = -1

Query: 414 PSRLMLPKGTYDGFPFQLFVFVYPY---------EPTPKESEPF----KSVVPDNKPFGY 274
           P  ++LPKGT  G+P  LFV +  Y           T  + + F      + PD +  GY
Sbjct: 582 PQHMLLPKGTEAGYPCHLFVMISNYADDRVEQDTSGTCSDGDTFCGIKDKLYPDRRSMGY 641

Query: 273 PFDR 262
           PFDR
Sbjct: 642 PFDR 645


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 33.1 bits (72), Expect = 0.002
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 13/64 (20%)
 Frame = -1

Query: 414 PSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEP-------------FKSVVPDNKPFGY 274
           P  +++PKGT +G   QLFV +  Y+    +                   + PD +  GY
Sbjct: 583 PQHMLIPKGTPEGMKSQLFVMISNYDDDKIDQSTEGVCNDAGSYCGIKDKLYPDRRSMGY 642

Query: 273 PFDR 262
           PFDR
Sbjct: 643 PFDR 646


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
 Frame = +1

Query: 406 PRRHSVRG---VEHVSRNLSLVQELVDFGHR*RVF 501
           P    +RG   V H   N S VQ+L   GH   VF
Sbjct: 214 PNGCQIRGTFFVSHKYTNYSAVQDLHRRGHEIAVF 248


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
 Frame = +1

Query: 406 PRRHSVRG---VEHVSRNLSLVQELVDFGHR*RVF 501
           P    +RG   V H   N S VQ+L   GH   VF
Sbjct: 221 PNGCQIRGTFFVSHKYTNYSAVQDLHRRGHEIAVF 255


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -3

Query: 229 MFFKKVLVYHEGELFPYLFNI 167
           ++F +++VY    + P L+N+
Sbjct: 333 LYFCRIMVYLNSAINPILYNL 353


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 299 FRTTNHSVIHSIAPFSSVLQTT*HVLQE 216
           + T   S+ HS+A  + +L +  H+LQ+
Sbjct: 211 YSTDYSSLTHSLAASNHLLSSGQHLLQD 238


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,245
Number of Sequences: 336
Number of extensions: 3012
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)