Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30280.Seq
         (752 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   3.5  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   6.0  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    22   6.0  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    22   6.0  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -3

Query: 729 KWQLPXSPLICAQLFCDNR 673
           +W     P +C  LFC  R
Sbjct: 337 RWHTGERPFVCNWLFCGKR 355


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 122 WVCPCDGGSRSINHQGFYYLPFYS 51
           W+C     + S   + FYYLP  S
Sbjct: 49  WICALVNYNVSEISENFYYLPAMS 72


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 505 FRSAGACAPSSSKWSKQIHHHFASWAPDTVI 597
           F + G    + SK SKQ+ +    W P  +I
Sbjct: 143 FDTLGGLYSTWSKKSKQVEYFLIHWYPRMLI 173


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 505 FRSAGACAPSSSKWSKQIHHHFASWAPDTVI 597
           F + G    + SK SKQ+ +    W P  +I
Sbjct: 143 FDTLGGLYSTWSKKSKQVEYFLIHWYPRMLI 173


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,687
Number of Sequences: 336
Number of extensions: 3749
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)