Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30215.Seq
         (344 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   4.7  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    20   6.2  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    20   6.2  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    20   8.2  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    20   8.2  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 184 TLEEKDPKRLFEGNALLR 237
           T EEK P+  F G  L R
Sbjct: 225 TAEEKRPRTAFSGAQLAR 242


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 204 QEIVRR*CPSTSSGSYWVLDEKQMKLD 284
           ++ V R   S +S  Y+VLDE    LD
Sbjct: 297 KDFVNRGNVSFNSLKYFVLDEADRMLD 323


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 7/30 (23%), Positives = 15/30 (50%)
 Frame = -1

Query: 146 VYLTRHTSRLLRRPYSPMIFNSWSRRAFSK 57
           VY+    S  +   Y  + +N W ++ +S+
Sbjct: 53  VYIGTDLSYFISNVYQILAYNFWKKKYWSE 82


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +2

Query: 272 DETRLCAWSEDXGLLGASSAD 334
           D+  +C+W ++    G SS +
Sbjct: 146 DKAGICSWPDEAKKKGCSSEE 166


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -3

Query: 129 YFTLVAETVLSDDLQLLVKTCLFKRTTRCHVRL*KYRRYSVV 4
           +  LVA  +L+  LQ   K       T CH+ +     Y V+
Sbjct: 327 HLQLVAIRLLNTKLQFTAKDFFNLDWTFCHMMIAALTTYLVI 368


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,654
Number of Sequences: 336
Number of extensions: 1331
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6770240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)