Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30191.Seq
         (514 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   2.1  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   2.8  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   6.4  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   6.4  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 348 SAPLTTVWLPSPYNKW 395
           SA + TVW+ S  N+W
Sbjct: 448 SAYVATVWINSVINRW 463


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +1

Query: 244 QSWQIVVNLTGRLNKCGVISPR-FDVP 321
           Q WQ  +     LNKC V  PR +D P
Sbjct: 125 QGWQNSIRHNLSLNKCFVKVPRHYDDP 151


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -1

Query: 265 LQQSASSVIINDFKLSDVTVLHHHC*KLNDDFGTGP 158
           + QSA++   +DF  SD     H   + +   G GP
Sbjct: 37  IDQSAAAASWHDFDNSDFFQSEHAVIQTHPSIGGGP 72


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -1

Query: 265 LQQSASSVIINDFKLSDVTVLHHHC*KLNDDFGTGP 158
           + QSA++   +DF  SD     H   + +   G GP
Sbjct: 37  IDQSAAAASWHDFDNSDFFQSEHAVIQTHPSIGGGP 72


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,387
Number of Sequences: 336
Number of extensions: 2084
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12258909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)