Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30148.Seq
         (812 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    25   0.54 
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    25   0.95 
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    24   1.7  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   6.7  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   6.7  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   6.7  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.8  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   8.8  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 589 SSCHSGACVCRGCSGYGGF*RRSLT-SSTFACR 494
           S  H  A  C GC    GF RRS+T ++ + C+
Sbjct: 196 SGYHYNALTCEGCK---GFFRRSITKNAVYQCK 225


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 589 SSCHSGACVCRGCSGYGGF*RRSLTSSTFACRK 491
           S  H G   C GC G+  F R      ++ACR+
Sbjct: 94  SGKHYGVYSCEGCKGF--FKRTVRKDLSYACRE 124


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +2

Query: 47  CIYWFILL*WQQ-SYATTSNI 106
           CI +FI L WQQ S  TTS +
Sbjct: 17  CILFFIYLYWQQTSNLTTSKL 37


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 410 NNGKLQTDPFSGDHC 454
           N+G LQ DP SG  C
Sbjct: 303 NHGLLQGDPLSGCLC 317


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -2

Query: 580 HSGACVCRGCSGYGG 536
           H GA  C GC  + G
Sbjct: 16  HFGAFTCEGCKSFFG 30


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 429 PTRSPATTVPSAYDDPDP 482
           P   P T+  SA + PDP
Sbjct: 216 PAEFPTTSSSSALESPDP 233


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -2

Query: 595 FGSSCHSGACVCRGCSGYGGF*RRSLTSSTFACR 494
           F S  H     C GC+G+  F R    +  + C+
Sbjct: 44  FSSGKHYNIFACDGCAGF--FKRSIRRNRQYVCK 75


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -2

Query: 595 FGSSCHSGACVCRGCSGYGGF*RRSLTSSTFACR 494
           F S  H     C GC+G+  F R    +  + C+
Sbjct: 44  FSSGKHYNIFACDGCAGF--FKRSIRRNRQYVCK 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,179
Number of Sequences: 336
Number of extensions: 3184
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22206566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)