SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30142.Seq
         (600 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   6.0  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    21   7.9  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   7.9  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    21   7.9  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    21   7.9  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    21   7.9  

>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -1

Query: 129 CIENNVNLSNSLNKMMYND*IVQCFMP 49
           C++   N+    N ++YND    C  P
Sbjct: 128 CVDGKYNMITCPNGLVYNDKAGICSWP 154


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 312 ILTKRTISMIYKLQ 271
           I +K+TIS  YKLQ
Sbjct: 303 IASKQTISWCYKLQ 316


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 293 IVLFVSMYIFIILTNVILKTVKAP 364
           IVL +   ++ + TN++LK + +P
Sbjct: 309 IVLHLIRLMYQVTTNLVLKLLTSP 332


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 296 VLFVSMYIFIILTNVILKTVKAP 364
           +   S+YI+ ILT +    V +P
Sbjct: 44  IYLTSLYIWFILTQMTFSGVTSP 66


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 296 VLFVSMYIFIILTNVILKTVKAP 364
           +   S+YI+ ILT +    V +P
Sbjct: 44  IYLTSLYIWFILTQMTFSGVTSP 66


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 312 ILTKRTISMIYKLQ 271
           I +K+TIS  YKLQ
Sbjct: 303 IASKQTISWCYKLQ 316


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,615
Number of Sequences: 336
Number of extensions: 1883
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2022 -