Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0020
         (603 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    23   1.5  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    23   1.5  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    23   1.5  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    23   2.6  

>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -2

Query: 590 NRLYKIFKFWNFFWSANQQ 534
           N + +++  W++FW   QQ
Sbjct: 301 NEVCELYSDWDYFWDDEQQ 319


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -2

Query: 590 NRLYKIFKFWNFFWSANQQ 534
           N + +++  W++FW   QQ
Sbjct: 302 NEVCELYSDWDYFWDDEQQ 320


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -2

Query: 590 NRLYKIFKFWNFFWSANQQ 534
           N + +++  W++FW   QQ
Sbjct: 302 NEVCELYSDWDYFWDDEQQ 320


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 549 PEKIPEFEDFVQSVDIAA 602
           PE +P  ED+ + VD+ A
Sbjct: 214 PEDVPGCEDYYKDVDLKA 231


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,685
Number of Sequences: 336
Number of extensions: 2800
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)