Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D04f
         (358 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   6.6  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    20   8.7  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    20   8.7  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    20   8.7  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    20   8.7  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    20   8.7  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    20   8.7  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 84  PHVYKSVQPNGSDLPMND 137
           P  YK  +PN  D+ + D
Sbjct: 740 PGDYKDFKPNNPDIKVED 757


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -1

Query: 304 FWSALWFI 281
           FWSAL+F+
Sbjct: 232 FWSALYFL 239


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 144 TLRYYYNLGVECM 182
           TL Y++NL V C+
Sbjct: 211 TLYYFFNLIVPCV 223


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 144 TLRYYYNLGVECM 182
           TL Y++NL V C+
Sbjct: 211 TLYYFFNLIVPCV 223


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 144 TLRYYYNLGVECM 182
           TL Y++NL V C+
Sbjct: 211 TLYYFFNLIVPCV 223


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 144 TLRYYYNLGVECM 182
           TL Y++NL V C+
Sbjct: 211 TLYYFFNLIVPCV 223


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 144 TLRYYYNLGVECM 182
           TL Y++NL V C+
Sbjct: 211 TLYYFFNLIVPCV 223


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,655
Number of Sequences: 336
Number of extensions: 804
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7193380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)