Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30074
         (622 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   0.39 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   0.39 
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    24   1.2  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    24   1.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.7  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   2.7  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   4.8  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   8.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.3  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   8.3  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
 Frame = +3

Query: 207  AGLISSCTMLSPMIVTMFAGTLADVFGRKKISVACGFIILSSWILVLTAKS------ASQ 368
            A  I  C   S  I   FAG ++ ++G   ++V  G ++  S    L   S      A++
Sbjct: 928  AVFILVCATCSSDIQLFFAGLISAIYGLIMMAVFVGVMLQISQDGPLAPSSLFFFCMAAE 987

Query: 369  ILIARLICGLAFGCNIIVVIMYI 437
             +IA L+    F C    VI Y+
Sbjct: 988  FIIAALLHPQEFNCLKYGVIYYV 1010


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
 Frame = +3

Query: 207  AGLISSCTMLSPMIVTMFAGTLADVFGRKKISVACGFIILSSWILVLTAKS------ASQ 368
            A  I  C   S  I   FAG ++ ++G   ++V  G ++  S    L   S      A++
Sbjct: 928  AVFILVCATCSSDIQLFFAGLISAIYGLIMMAVFVGVMLQISQDGPLAPSSLFFFCMAAE 987

Query: 369  ILIARLICGLAFGCNIIVVIMYI 437
             +IA L+    F C    VI Y+
Sbjct: 988  FIIAALLHPQEFNCLKYGVIYYV 1010


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 161 ERGYGI*WPDEGEGCLEAGYCQND 90
           ER +   WP+  +GC +   C +D
Sbjct: 136 ERTHSCDWPENVDGCQKHPLCNDD 159


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 413 HHCGHHVH 436
           HH GHH+H
Sbjct: 324 HHAGHHIH 331


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 371 PHSSTDLRTGVRLQHHCGHHVHRR 442
           P  S  L T     HH GHH+  +
Sbjct: 151 PTGSPPLTTQSMNNHHMGHHMQEQ 174


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 371 PHSSTDLRTGVRLQHHCGHHVHRR 442
           P  S  L T     HH GHH+  +
Sbjct: 153 PTGSPPLTTQSMNNHHMGHHMQEQ 176


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -3

Query: 257 HGHYHRTQHGARADETGLSLRYLVPQRRAVTLE 159
           H  YH+  H    + T  +L+ L PQ   ++++
Sbjct: 439 HPVYHKDPHYGFHNVTNTTLQNLTPQLNYISMK 471


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
          protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +2

Query: 38 CVHVRHDEGKTHTI 79
          C+HV+H  G T  +
Sbjct: 13 CLHVQHSHGATDKV 26


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 121 PSPSSGHHMPYPRSRVTA 174
           PSP    H+PY  + V A
Sbjct: 278 PSPIGASHLPYFAAAVAA 295


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 536 DPAQRVRCQGSN 501
           DPA R  C GSN
Sbjct: 232 DPASRSSCLGSN 243


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,228
Number of Sequences: 336
Number of extensions: 3243
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)