Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30069
         (658 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   1.7  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   3.9  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   5.1  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   5.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.7  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.7  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   8.9  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 191 HPYGSLDARQIEGSRSHYRVKGCWLSNNRW 280
           HPY S     + G+  H  +K   +++N W
Sbjct: 160 HPYESWPFNTMSGATHHGGIKSDSVTSNAW 189


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 6/17 (35%), Positives = 15/17 (88%)
 Frame = -2

Query: 417 VQKVQSPIHQISMQVVH 367
           V+K+++ +HQ++ +V+H
Sbjct: 502 VEKLETLVHQLNTEVLH 518


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 201 PYGCNPHDISH 169
           P G NPHDI++
Sbjct: 749 PVGTNPHDINN 759


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 201 PYGCNPHDISH 169
           P G NPHDI++
Sbjct: 641 PVGTNPHDINN 651


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 617 PQVSICPLISCQAFGTRF 564
           P V+ C L+SC+ F T +
Sbjct: 11  PGVNRCKLLSCKDFDTLY 28


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 44  TSFCKNGNGK 73
           T FC+NGN K
Sbjct: 695 TCFCENGNNK 704


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -2

Query: 240 WLRLPSICLASSEPYGCNP 184
           W+ +  IC+++  P  C+P
Sbjct: 478 WMPVMRICVSAWNPKDCDP 496


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 333 LDHYPIRLLKLAAVERLC 280
           L H+P R+  L  +E++C
Sbjct: 270 LRHFPERIQSLWVLEKIC 287


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,706
Number of Sequences: 336
Number of extensions: 3790
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)