Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30064
         (604 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   0.86 
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   2.0  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    23   2.6  
EF532798-1|ABQ08060.1|   50|Tribolium castaneum acetylcholineste...    22   4.6  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    22   4.6  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   4.6  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -2

Query: 279 LVWPGVAAARSSWLPNRTRSPSSRWISAWAP 187
           L+ P + A  + W P     P   WI  W P
Sbjct: 520 LIMPRIQAEVNIWNPLTDTIPIHVWIHPWIP 550


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 428 DEYVLYPAHDYRGQTATSVAEE 493
           DEYV+    ++ G+T  SV +E
Sbjct: 515 DEYVVQQMKEFDGKTLVSVTKE 536


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 578 SFSDTANSNYP*SQRTRQATSSIWDCISSLRRQM 477
           SF D  +     + R RQ T S+ +  +SLR+ +
Sbjct: 90  SFEDIQHQRVMANVRERQRTQSLNEAFASLRKSI 123


>EF532798-1|ABQ08060.1|   50|Tribolium castaneum
           acetylcholinesterase protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -2

Query: 243 WLPNRTRSPSSRWISAWAPESL 178
           W PN   S    +++ W P+ L
Sbjct: 3   WNPNTNISEDCLYLNIWVPQRL 24


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +2

Query: 380 SETLYKSVHNRIFTLPDEYVLYPAH 454
           S  +Y  +    F  PD++  YP H
Sbjct: 11  SALIYSVLGQENFKCPDDFGFYPHH 35


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +2

Query: 380 SETLYKSVHNRIFTLPDEYVLYPAH 454
           S  +Y  +    F  PD++  YP H
Sbjct: 11  SALIYSVLGQENFKCPDDFGFYPHH 35


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,385
Number of Sequences: 336
Number of extensions: 3061
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)