Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30063
         (640 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    27   0.100
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   6.6  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   6.6  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   6.6  

>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 0.100
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -2

Query: 267 LFSLLAFTETAAVCGLFRSHDANLSLWPDLEMLNTILARCMIVICCDPLVCQTFDTV 97
           L +L  FT T  +  L+  H   +S    ++   T++A C +V+ CD    ++  TV
Sbjct: 252 LVALNFFTSTLEIDNLYLKHKLEISSL--VQTAITLVAMCGLVLICDSAKSESQQTV 306


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +1

Query: 535 DNRRSPRRAXYHXELPGSRSPW 600
           +  +SP R   H E P   S W
Sbjct: 93  EEAQSPHRIYMHPESPSKGSHW 114


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 271 PRGGTLPQWL 300
           P GG LP+WL
Sbjct: 206 PSGGFLPKWL 215


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 182 SGQSERFASWLLNKPQTAAVSVNANRLKSS 271
           S Q   F S +LN      +++N N + SS
Sbjct: 43  SPQGASFGSSMLNSGMPGGMAMNGNGMTSS 72


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,898
Number of Sequences: 336
Number of extensions: 3091
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)