Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30127
         (660 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    25   0.55 
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   3.9  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   5.1  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   9.0  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   9.0  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 229 PNHFSTFRRRGFTMRMSTAKCLKFLL 152
           PN ++ F  + +T +    KC+K+L+
Sbjct: 33  PNFYNDFEVQRYTWKCENQKCVKYLV 58


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 546 LDCSRLLDESSRAETSSKELP 484
           LDCS+   E    E  SKE P
Sbjct: 64  LDCSKNSPEKESEEKKSKEKP 84


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 537 SRLLDESSRAETSSKELPSMISSSFCF 457
           S +   S R   S K+LPS  S S CF
Sbjct: 155 SYIKPSSERDYFSVKKLPSPASDSECF 181


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 502 CLCSAALIQQSTTVKNKDIRKFLDGLY 582
           C  + AL+      K+  I++FL G+Y
Sbjct: 99  CRSALALLLSPEVGKDHRIKRFLRGVY 125


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +3

Query: 210 KVEKWFGSKKELAAVGQSVHM*RT*LKE*LKASNTRCVLCMLTSPLTVS 356
           +V+ WF +++      Q  H  +  +++  K  N    +   TSP  VS
Sbjct: 112 RVQVWFKNRRAKCRQQQKQHNQQQSVEKSSKLKNKSAPILTKTSPTPVS 160


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,526
Number of Sequences: 336
Number of extensions: 3339
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)