Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30125
         (477 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   0.47 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   0.47 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.1  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   1.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   4.4  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   4.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   4.4  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 0.47
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 82  WNLVPVVVKLLYLASC 129
           WNL+P+ V +L  A+C
Sbjct: 922 WNLLPIAVFILVCATC 937


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 0.47
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 82  WNLVPVVVKLLYLASC 129
           WNL+P+ V +L  A+C
Sbjct: 922 WNLLPIAVFILVCATC 937


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 80  DETENTIASTTYSETSDKL 24
           DET+N  +  TY+E  +KL
Sbjct: 340 DETKNHYSKNTYNEQGNKL 358


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 80  DETENTIASTTYSETSDKL 24
           DET+N  +  TY+E  +KL
Sbjct: 232 DETKNHYSKNTYNEQGNKL 250


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +2

Query: 278 DQQGKNGPKKPQP--DHILVTEP 340
           D Q +N PK+P+P  D   VT P
Sbjct: 322 DHQRRNEPKRPRPNIDRHEVTRP 344


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -1

Query: 114 QQLHNH--GHQIP**NGEHHSKHDVQRDL 34
           Q ++NH  GH +   + +HH  H  Q+ +
Sbjct: 160 QSMNNHHMGHHMQEQHPQHHQPHHQQQHM 188


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = +3

Query: 51  RACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVL 230
           R C+ V    +E   RG   V    +  +     K +  LMI     CN YV+     ++
Sbjct: 205 RLCFQVF---LEGERRGKFTVPLTPVVSEPIYDKKAMSDLMIVKLSHCNSYVDGGRNEII 261

Query: 231 L 233
           L
Sbjct: 262 L 262


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -1

Query: 114 QQLHNH--GHQIP**NGEHHSKHDVQRDL 34
           Q ++NH  GH +   + +HH  H  Q+ +
Sbjct: 162 QSMNNHHMGHHMQEQHPQHHQPHHQQQHM 190


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,255
Number of Sequences: 336
Number of extensions: 2241
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11141978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)