Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30079
         (565 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   4.2  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    21   7.3  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   7.3  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    21   7.3  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   9.6  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +1

Query: 451 INYVNIEII*CGAICTNLM*QFLQIN 528
           +NY+ I +   G+ CT++  +F Q++
Sbjct: 367 LNYIFIAVGIVGSACTDVEQKFFQVS 392


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 477 YYFYIDIIYSPY 442
           Y+FY+  IY+ Y
Sbjct: 87  YFFYLSYIYTTY 98


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 192 LVXHVSGVHLAGHLELHGTNVNFTAKSPKVRF 97
           L+  + GV    HL      ++FT KS KV +
Sbjct: 33  LLSQIVGVFPLNHLNEEPEKLHFTFKSWKVLY 64


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 477 YYFYIDIIYSPY 442
           Y+FY+  IY+ Y
Sbjct: 43  YFFYLSYIYTTY 54


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 170 STSRATSSFMAPT*ISLQRVQKCGSWT 90
           ST  A +S  A   ISL  ++K   W+
Sbjct: 288 STRHAATSAAARKGISLDLIRKTAGWS 314


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,045
Number of Sequences: 336
Number of extensions: 2277
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13890653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)