Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30073
         (734 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    58   7e-11
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   1.9  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   2.6  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    21   7.8  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 58.0 bits (134), Expect = 7e-11
 Identities = 28/76 (36%), Positives = 43/76 (56%)
 Frame = -2

Query: 232 DFCFPYVDDILVHSADENLHLKHLRTLFERLQEYGVVINPSKCTLGVDEVNFLGYHINSE 53
           +F   Y+DD+LV S   N HL+HLR +FE+L++  + IN  K      EV FLG+ +   
Sbjct: 452 EFVVNYIDDLLVASETLNEHLEHLRQVFEKLKQARMTINLEKSNFIQKEVKFLGHILTIN 511

Query: 52  GTRPPQARIQVLLDFP 5
           G +    +I  + +FP
Sbjct: 512 GIKADPEKISAIRNFP 527



 Score = 41.1 bits (92), Expect = 9e-06
 Identities = 24/85 (28%), Positives = 39/85 (45%)
 Frame = -3

Query: 507 CGDYRALNARTVPDRYPVRHIHDFAHNLSGSKVFSTIDLVKAYHQIPIAEEDVPKTAIVT 328
           C D R +N++ + D        +        +  STIDL  +Y QIP++ E    TA + 
Sbjct: 358 CLDARMINSKMIADCESPPAADELLRRFHEIRYMSTIDLRSSYWQIPLSPESRQYTAFLY 417

Query: 327 PFGLFEFPFMTFGLRNAGQTFQRFM 253
               + +  + FGL+ A  +F R M
Sbjct: 418 NGRSYTYQVLPFGLKTAVGSFSRAM 442



 Score = 31.1 bits (67), Expect = 0.010
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = -1

Query: 704 HHTVHFIKTTDGPPIXCRPRRLAPQKLVAAKKEFEDMVQSGTARPSKSAWSSPLHMTIKK 525
           H   H IK  D  P   RP  +      A     ++M+  G  +   S ++SP+ +  KK
Sbjct: 292 HKYTHEIKLHDKTPFLKRPYPVPFALRPAVDATIQEMLDLGVIKREASPYASPMTVGKKK 351

Query: 524 DDTWR 510
           D T R
Sbjct: 352 DGTVR 356



 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 707 KHHTVHFIKTTDGPP 663
           KHH+  F KTT+ PP
Sbjct: 206 KHHSFPFRKTTEIPP 220


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 178 DSHQLNERGCHQRRENRNQD 237
           DS  + E GC+ RR+ R +D
Sbjct: 219 DSGNMFENGCYLRRQKRFKD 238


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 520 SSFLIVICSGDDQALLDGRAVPDCTISSNSFLAATSF 630
           +S ++VI         DG  VP C   +N+F +A  F
Sbjct: 202 TSPMLVIAEYKQLDYFDGSKVPACHTLANTFWSALYF 238


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 432 HNLSGSKVFSTIDLVKAYHQIPIAEEDVPK 343
           HNL  S+ FST   V     + ++EE +PK
Sbjct: 82  HNLCRSECFSTKYFVGCVESLLLSEE-MPK 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,515
Number of Sequences: 336
Number of extensions: 4200
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)